FvH4_7g25621

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000094
Physical Location & Seq
Reverse (-)
19548815 .. 19555013
6199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25621.t1

Sequence Viewer

Length: 3480 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGGAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCATTTAAGACTCTTTTCTTGGGGCAATATTTCAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCTGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGATTATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAACTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGCGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGTTAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTATTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCCGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTTCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACGCAATTACTCTTCAGTACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAACAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTTAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCCAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAGGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGAAGCGTCATGGCGACGCCTTGGCGAGTCATGGCGGCTTCTTGGTGGCACAAGGCGGTTCAAGGCGAGTTAAGGCGGTCTACGACGGGCCAAGGCGTTCCAAGGTGGGTCAAGGCGGCCCAAGGCATGTCAAGACGGGTCAAGGCGAGCAAAGGCGTGTCAAGGCAAGTCAAGGCGGGTCAAGGCGGTCCAAGGCAGATCAAGGGAGGTTAAGGCGGGCCAAGCCCCTTGGCGGGTCAAGACGTTCGCTTGACTGCCCTAGGCGTGTTAAGGCGGTCCTAGAAATGTTAAGGCGGCCTCTTGGCGGCCCTAGACGGGTCAAGGCGTGTAAAGGCAGCCTCTTAGCGGCCCTAGGTGGGTCATGGCTCCCCCTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1160

Amino Acids

130.2

Weight (kDa)

9.84

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 397 - 491 5.7e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 424 - 521 1.2e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 636 - 693 3.1e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 925 - 989 4.5e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3058
AatII GACGTC 1 cut(s) 715
Acc36I ACCTGC 3 cut(s) 733, 1094, 3058
AccB1I GGYRCC 4 cut(s) 12, 185, 962, 2572
AccB7I CCANNNNNTGG 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 3180
AccIII TCCGGA 1 cut(s) 1261
AclWI GGATC 7 cut(s) 123, 685, 1019, 1032, 2336, 2349, 2969
AcoI YGGCCR 3 cut(s) 549, 581, 2012
AcsI RAATTY 4 cut(s) 333, 2360, 2531, 2762
AcuI CTGAAG 5 cut(s) 627, 856, 924, 2360, 2389
AcyI GRCGYC 4 cut(s) 13, 712, 2573, 3117
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 3 cut(s) 2176, 2392, 2410
AflII CTTAAG 1 cut(s) 2705
AgeI ACCGGT 1 cut(s) 3040
AjiI CACGTC 1 cut(s) 1307
AjnI CCWGG 4 cut(s) 449, 966, 1585, 2924
AjuI GAANNNNNNNTTGG 2 cut(s) 2246, 2278
AleI CACNNNNGTG 1 cut(s) 1070
Alw21I GWGCWC 6 cut(s) 124, 248, 580, 1246, 2283, 2374
Alw26I GTCTC 3 cut(s) 715, 1435, 1522
AlwI GGATC 7 cut(s) 123, 685, 1019, 1032, 2336, 2349, 2969
Ama87I CYCGRG 1 cut(s) 2845
Aor13HI TCCGGA 1 cut(s) 1261
ApoI RAATTY 4 cut(s) 333, 2360, 2531, 2762
ArsI GACNNNNNNTTYG 2 cut(s) 3004, 3036
AsiGI ACCGGT 1 cut(s) 3040
Asp700I GAANNNNTTC 2 cut(s) 811, 3042
AspA2I CCTAGG 3 cut(s) 8, 3359, 3451
AspLEI GCGC 3 cut(s) 15, 1119, 2575
AsuC2I CCSGG 2 cut(s) 757, 1968
AsuHPI GGTGA 5 cut(s) 283, 2137, 2212, 2215, 2786
AsuII TTCGAA 1 cut(s) 1823
AvaI CYCGRG 1 cut(s) 2845
AvaII GGWCC 8 cut(s) 194, 447, 599, 611, 903, 2137, 3288, 3376
AvrII CCTAGG 3 cut(s) 8, 3359, 3451
BaeGI GKGCMC 2 cut(s) 475, 967
BalI TGGCCA 2 cut(s) 551, 2014
BamHI GGATCC 2 cut(s) 1024, 2341
BanI GGYRCC 4 cut(s) 12, 185, 962, 2572
BanII GRGCYC 3 cut(s) 124, 2283, 2374
BarI GAAGNNNNNNTAC 2 cut(s) 2940, 2972
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 3 cut(s) 930, 1066, 1484
Bbv12I GWGCWC 6 cut(s) 124, 248, 580, 1246, 2283, 2374
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 35, 2095
BcgI CGANNNNNNTGC 2 cut(s) 1319, 1353
BciT130I CCWGG 4 cut(s) 451, 968, 1587, 2926
BciVI GTATCC 2 cut(s) 2922, 2959
BcnI CCSGG 2 cut(s) 757, 1968
BcoDI GTCTC 3 cut(s) 715, 1435, 1522
BfmI CTRYAG 1 cut(s) 1689
BfoI RGCGCY 3 cut(s) 16, 1120, 2576
BfrI CTTAAG 1 cut(s) 2705
BfuAI ACCTGC 3 cut(s) 733, 1094, 3058
BfuI GTATCC 2 cut(s) 2922, 2959
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 2755
BlnI CCTAGG 3 cut(s) 8, 3359, 3451
BlpI GCTNAGC 1 cut(s) 2840
BmcAI AGTACT 1 cut(s) 2410
Bme1390I CCNGG 6 cut(s) 451, 757, 968, 1587, 1968, 2926
Bme18I GGWCC 8 cut(s) 194, 447, 599, 611, 903, 2137, 3288, 3376
BmeT110I CYCGRG 1 cut(s) 2845
BmgBI CACGTC 1 cut(s) 1307
BmrFI CCNGG 6 cut(s) 451, 757, 968, 1587, 1968, 2926
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 193, 1285, 1317, 1600
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 3 cut(s) 930, 1066, 1484
BplI GAGNNNNNCTC 2 cut(s) 892, 924
BpmI CTGGAG 4 cut(s) 186, 966, 1424, 2898
Bpu10I CCTNAGC 4 cut(s) 101, 410, 3074, 3473
Bpu1102I GCTNAGC 1 cut(s) 2840
Bpu14I TTCGAA 1 cut(s) 1823
BpuEI CTTGAG 2 cut(s) 1415, 2126
BpuMI CCSGG 2 cut(s) 757, 1968
Bsa29I ATCGAT 1 cut(s) 2899
BsaBI GATNNNNATC 1 cut(s) 2340
BsaHI GRCGYC 4 cut(s) 13, 712, 2573, 3117
BsaI GGTCTC 1 cut(s) 715
BsaWI WCCGGW 2 cut(s) 1261, 3040
Bse118I RCCGGY 1 cut(s) 3040
Bse1I ACTGG 7 cut(s) 81, 603, 736, 1734, 1751, 2123, 2243
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 2340
BseAI TCCGGA 1 cut(s) 1261
BseBI CCWGG 4 cut(s) 451, 968, 1587, 2926
BseCI ATCGAT 1 cut(s) 2899
BseJI GATNNNNATC 1 cut(s) 2340
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 7 cut(s) 92, 401, 911, 935, 1010, 2438, 2729
BseNI ACTGG 7 cut(s) 81, 603, 736, 1734, 1751, 2123, 2243
BseRI GAGGAG 1 cut(s) 1140
BseSI GKGCMC 2 cut(s) 475, 967
BsgI GTGCAG 1 cut(s) 2214
Bsh1285I CGRYCG 1 cut(s) 3058
BshNI GGYRCC 4 cut(s) 12, 185, 962, 2572
BshTI ACCGGT 1 cut(s) 3040
BshVI ATCGAT 1 cut(s) 2899
BsiEI CGRYCG 1 cut(s) 3058
BsiHKAI GWGCWC 6 cut(s) 124, 248, 580, 1246, 2283, 2374
BsiHKCI CYCGRG 1 cut(s) 2845
BsiSI CCGG 4 cut(s) 756, 1262, 1967, 3041
BslFI GGGAC 6 cut(s) 87, 207, 585, 805, 1879, 2150
BsmAI GTCTC 3 cut(s) 715, 1435, 1522
BsmFI GGGAC 6 cut(s) 87, 207, 585, 805, 1879, 2150
Bso31I GGTCTC 1 cut(s) 715
BsoBI CYCGRG 1 cut(s) 2845
Bsp119I TTCGAA 1 cut(s) 1823
Bsp1286I GDGCHC 8 cut(s) 124, 248, 475, 580, 967, 1246, 2283, 2374
Bsp13I TCCGGA 1 cut(s) 1261
Bsp1720I GCTNAGC 1 cut(s) 2840
Bsp19I CCATGG 3 cut(s) 546, 784, 2148
BspCNI CTCAG 7 cut(s) 93, 402, 910, 934, 1009, 2437, 2728
BspDI ATCGAT 1 cut(s) 2899
BspEI TCCGGA 1 cut(s) 1261
BspHI TCATGA 2 cut(s) 862, 1396
BspMI ACCTGC 3 cut(s) 733, 1094, 3058
BspPI GGATC 7 cut(s) 123, 685, 1019, 1032, 2336, 2349, 2969
BspQI GCTCTTC 1 cut(s) 2379
BspT104I TTCGAA 1 cut(s) 1823
BspT107I GGYRCC 4 cut(s) 12, 185, 962, 2572
BspTI CTTAAG 1 cut(s) 2705
BspTNI GGTCTC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 3040
BsrI ACTGG 7 cut(s) 81, 603, 736, 1734, 1751, 2123, 2243
BssAI RCCGGY 1 cut(s) 3040
BssNI GRCGYC 4 cut(s) 13, 712, 2573, 3117
BssSI CACGAG 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 4 cut(s) 451, 968, 1587, 2926
Bst4CI ACNGT 4 cut(s) 1072, 1782, 2195, 2312
Bst6I CTCTTC 8 cut(s) 356, 1852, 1905, 1913, 2018, 2379, 2408, 3027
BstACI GRCGYC 4 cut(s) 13, 712, 2573, 3117
BstAFI CTTAAG 1 cut(s) 2705
BstAPI GCANNNNNTGC 1 cut(s) 1958
BstBI TTCGAA 1 cut(s) 1823
BstC8I GCNNGC 6 cut(s) 1205, 1410, 1686, 2609, 3248, 3318
BstDSI CCRYGG 4 cut(s) 17, 546, 784, 2148
BstENI CCTNNNNNAGG 1 cut(s) 2805
BstH2I RGCGCY 3 cut(s) 16, 1120, 2576
BstHHI GCGC 3 cut(s) 15, 1119, 2575
BstMAI GTCTC 3 cut(s) 715, 1435, 1522
BstMCI CGRYCG 1 cut(s) 3058
BstNI CCWGG 4 cut(s) 451, 968, 1587, 2926
BstNSI RCATGY 1 cut(s) 3230
BstSCI CCNGG 6 cut(s) 449, 755, 966, 1585, 1966, 2924
BstSFI CTRYAG 1 cut(s) 1689
BstSLI GKGCMC 2 cut(s) 475, 967
BstV2I GAAGAC 3 cut(s) 930, 1066, 1484
BstX2I RGATCY 3 cut(s) 1024, 2341, 2755
BstYI RGATCY 3 cut(s) 1024, 2341, 2755
Bsu15I ATCGAT 1 cut(s) 2899
BsuI GTATCC 2 cut(s) 2922, 2959
BsuTUI ATCGAT 1 cut(s) 2899
BtgI CCRYGG 4 cut(s) 17, 546, 784, 2148
BtgZI GCGATG 1 cut(s) 308
BtrI CACGTC 1 cut(s) 1307
BtsI GCAGTG 3 cut(s) 979, 1050, 2606
BtsIMutI CAGTG 9 cut(s) 979, 1050, 1068, 1205, 1561, 1713, 2130, 2250, 2606
BveI ACCTGC 3 cut(s) 733, 1094, 3058
Cac8I GCNNGC 6 cut(s) 1205, 1410, 1686, 2609, 3248, 3318
CciI TCATGA 2 cut(s) 862, 1396
CfoI GCGC 3 cut(s) 15, 1119, 2575
Cfr10I RCCGGY 1 cut(s) 3040
ClaI ATCGAT 1 cut(s) 2899
CseI GACGC 3 cut(s) 539, 3095, 3125
Csp6I GTAC 3 cut(s) 2175, 2391, 2409
CspAI ACCGGT 1 cut(s) 3040
CviQI GTAC 3 cut(s) 2175, 2391, 2409
DinI GGCGCC 2 cut(s) 14, 2574
DraI TTTAAA 1 cut(s) 1879
DraIII CACNNNGTG 1 cut(s) 479
EaeI YGGCCR 3 cut(s) 549, 581, 2012
Eam1104I CTCTTC 8 cut(s) 356, 1852, 1905, 1913, 2018, 2379, 2408, 3027
EarI CTCTTC 8 cut(s) 356, 1852, 1905, 1913, 2018, 2379, 2408, 3027
EciI GGCGGA 1 cut(s) 2291
Ecl136II GAGCTC 3 cut(s) 122, 2281, 2372
Eco24I GRGCYC 3 cut(s) 124, 2283, 2374
Eco31I GGTCTC 1 cut(s) 715
Eco47I GGWCC 8 cut(s) 194, 447, 599, 611, 903, 2137, 3288, 3376
Eco53kI GAGCTC 3 cut(s) 122, 2281, 2372
Eco57I CTGAAG 5 cut(s) 627, 856, 924, 2360, 2389
Eco88I CYCGRG 1 cut(s) 2845
EcoICRI GAGCTC 3 cut(s) 122, 2281, 2372
EcoNI CCTNNNNNAGG 1 cut(s) 2805
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 4 cut(s) 449, 966, 1585, 2924
EcoT38I GRGCYC 3 cut(s) 124, 2283, 2374
EgeI GGCGCC 2 cut(s) 14, 2574
EheI GGCGCC 2 cut(s) 14, 2574
FalI AAGNNNNNCTT 2 cut(s) 1217, 1249
FaqI GGGAC 6 cut(s) 87, 207, 585, 805, 1879, 2150
FauI CCCGC 6 cut(s) 993, 1764, 3099, 3269, 3309, 3326
FauNDI CATATG 1 cut(s) 1954
FblI GTMKAC 1 cut(s) 3180
FriOI GRGCYC 3 cut(s) 124, 2283, 2374
GlaI GCGC 3 cut(s) 14, 1118, 2574
GsuI CTGGAG 4 cut(s) 186, 966, 1424, 2898
HaeII RGCGCY 3 cut(s) 16, 1120, 2576
HapII CCGG 4 cut(s) 756, 1262, 1967, 3041
HgaI GACGC 3 cut(s) 539, 3095, 3125
HhaI GCGC 3 cut(s) 15, 1119, 2575
Hin1I GRCGYC 4 cut(s) 13, 712, 2573, 3117
Hin6I GCGC 3 cut(s) 13, 1117, 2573
HinP1I GCGC 3 cut(s) 13, 1117, 2573
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 2 cut(s) 234, 2837
HpaII CCGG 4 cut(s) 756, 1262, 1967, 3041
HphI GGTGA 5 cut(s) 283, 2137, 2212, 2215, 2786
Hpy166II GTNNAC 4 cut(s) 220, 1164, 1506, 3181
Hpy8I GTNNAC 4 cut(s) 220, 1164, 1506, 3181
Hpy99I CGWCG 2 cut(s) 3119, 3188
HpyAV CCTTC 8 cut(s) 50, 262, 368, 699, 1004, 1990, 2103, 2988
HpyCH4III ACNGT 4 cut(s) 1072, 1782, 2195, 2312
HpyCH4IV ACGT 3 cut(s) 712, 1306, 3343
HpyCH4V TGCA 9 cut(s) 542, 1330, 1412, 1569, 1952, 2036, 2231, 2491, 2992
HpySE526I ACGT 3 cut(s) 712, 1306, 3343
Hsp92I GRCGYC 4 cut(s) 13, 712, 2573, 3117
HspAI GCGC 3 cut(s) 13, 1117, 2573
KasI GGCGCC 2 cut(s) 12, 2572
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 1261
LguI GCTCTTC 1 cut(s) 2379
LweI GCATC 4 cut(s) 193, 1285, 1317, 1600
MaeII ACGT 3 cut(s) 712, 1306, 3343
MaeIII GTNAC 3 cut(s) 713, 1072, 2668
MfeI CAATTG 1 cut(s) 1364
MflI RGATCY 3 cut(s) 1024, 2341, 2755
MhlI GDGCHC 8 cut(s) 124, 248, 475, 580, 967, 1246, 2283, 2374
MlsI TGGCCA 2 cut(s) 551, 2014
MluNI TGGCCA 2 cut(s) 551, 2014
Mly113I GGCGCC 2 cut(s) 13, 2573
MlyI GAGTC 6 cut(s) 283, 566, 1498, 1861, 2211, 3136
MmeI TCCRAC 1 cut(s) 2600
Mox20I TGGCCA 2 cut(s) 551, 2014
MroI TCCGGA 1 cut(s) 1261
MroXI GAANNNNTTC 2 cut(s) 811, 3042
MscI TGGCCA 2 cut(s) 551, 2014
MslI CAYNNNNRTG 4 cut(s) 1070, 1979, 2147, 2567
Msp20I TGGCCA 2 cut(s) 551, 2014
MspA1I CMGCKG 4 cut(s) 656, 944, 1000, 1415
MspCI CTTAAG 1 cut(s) 2705
MspI CCGG 4 cut(s) 756, 1262, 1967, 3041
MspR9I CCNGG 6 cut(s) 451, 757, 968, 1587, 1968, 2926
MunI CAATTG 1 cut(s) 1364
MvaI CCWGG 4 cut(s) 451, 968, 1587, 2926
NarI GGCGCC 2 cut(s) 13, 2573
NciI CCSGG 2 cut(s) 757, 1968
NcoI CCATGG 3 cut(s) 546, 784, 2148
NdeI CATATG 1 cut(s) 1954
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 713, 1072
NspI RCATGY 1 cut(s) 3230
NspV TTCGAA 1 cut(s) 1823
OliI CACNNNNGTG 1 cut(s) 1070
PagI TCATGA 2 cut(s) 862, 1396
PaqCI CACCTGC 1 cut(s) 3058
PasI CCCWGGG 1 cut(s) 967
PciSI GCTCTTC 1 cut(s) 2379
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 2344
PdmI GAANNNNTTC 2 cut(s) 811, 3042
PfeI GAWTC 4 cut(s) 399, 1081, 2321, 3049
PflFI GACNNNGTC 1 cut(s) 1308
PflMI CCANNNNNTGG 1 cut(s) 1036
PfoI TCCNGGA 1 cut(s) 1585
PinAI ACCGGT 1 cut(s) 3040
PleI GAGTC 6 cut(s) 283, 565, 1497, 1861, 2211, 3135
PluTI GGCGCC 2 cut(s) 16, 2576
PpsI GAGTC 6 cut(s) 283, 565, 1497, 1861, 2211, 3135
PpuMI RGGWCCY 1 cut(s) 194
Psp124BI GAGCTC 3 cut(s) 124, 2283, 2374
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 4 cut(s) 449, 966, 1585, 2924
PspGI CCWGG 4 cut(s) 449, 966, 1585, 2924
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 3 cut(s) 1024, 2341, 2755
PsyI GACNNNGTC 1 cut(s) 1308
PvuII CAGCTG 2 cut(s) 656, 944
RsaI GTAC 3 cut(s) 2176, 2392, 2410
RsaNI GTAC 3 cut(s) 2175, 2391, 2409
RseI CAYNNNNRTG 4 cut(s) 1070, 1979, 2147, 2567
SacI GAGCTC 3 cut(s) 124, 2283, 2374
SapI GCTCTTC 1 cut(s) 2379
ScaI AGTACT 1 cut(s) 2410
SchI GAGTC 6 cut(s) 283, 566, 1498, 1861, 2211, 3136
ScrFI CCNGG 6 cut(s) 451, 757, 968, 1587, 1968, 2926
SduI GDGCHC 8 cut(s) 124, 248, 475, 580, 967, 1246, 2283, 2374
SfaNI GCATC 4 cut(s) 193, 1285, 1317, 1600
SfcI CTRYAG 1 cut(s) 1689
SfoI GGCGCC 2 cut(s) 14, 2574
SfuI TTCGAA 1 cut(s) 1823
SinI GGWCC 8 cut(s) 194, 447, 599, 611, 903, 2137, 3288, 3376
SmiMI CAYNNNNRTG 4 cut(s) 1070, 1979, 2147, 2567
SmlI CTYRAG 3 cut(s) 1430, 2105, 2705
SmoI CTYRAG 3 cut(s) 1430, 2105, 2705
SspDI GGCGCC 2 cut(s) 12, 2572
SspI AATATT 1 cut(s) 308
SstI GAGCTC 3 cut(s) 124, 2283, 2374
StyD4I CCNGG 6 cut(s) 449, 755, 966, 1585, 1966, 2924
TaaI ACNGT 4 cut(s) 1072, 1782, 2195, 2312
TaiI ACGT 3 cut(s) 715, 1309, 3346
TaqII GACCGA 2 cut(s) 970, 3072
TatI WGTACW 1 cut(s) 2408
TauI GCSGC 7 cut(s) 1375, 1835, 3138, 3219, 3397, 3408, 3449
TfiI GAWTC 4 cut(s) 399, 1081, 2321, 3049
TscAI CASTG 9 cut(s) 979, 1050, 1075, 1205, 1561, 1713, 2130, 2250, 2606
TseFI GTSAC 2 cut(s) 713, 1072
Tsp45I GTSAC 2 cut(s) 713, 1072
TspGWI ACGGA 2 cut(s) 1091, 2735
TspRI CASTG 9 cut(s) 979, 1050, 1075, 1205, 1561, 1713, 2130, 2250, 2606
Tth111I GACNNNGTC 1 cut(s) 1308
Van91I CCANNNNNTGG 1 cut(s) 1036
Vha464I CTTAAG 1 cut(s) 2705
VpaK11BI GGWCC 8 cut(s) 194, 447, 599, 611, 903, 2137, 3288, 3376
XagI CCTNNNNNAGG 1 cut(s) 2805
XapI RAATTY 4 cut(s) 333, 2360, 2531, 2762
XbaI TCTAGA 1 cut(s) 1301
XceI RCATGY 1 cut(s) 3230
XcmI CCANNNNNNNNNTGG 2 cut(s) 559, 2130
XmaJI CCTAGG 3 cut(s) 8, 3359, 3451
XmiI GTMKAC 1 cut(s) 3180
XmnI GAANNNNTTC 2 cut(s) 811, 3042
ZraI GACGTC 1 cut(s) 713
ZrmI AGTACT 1 cut(s) 2410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.