Rw5G030920

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000094
Physical Location & Seq
Reverse (-)
49585303 .. 49586899
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030920.1

Sequence Viewer

Length: 1557 bp
ATGTTAGACACACCGTACCAGAGTTTTGCTGAGGCAGTATCTTATGCCATGGACATTGAGTCGGACTCACCTGCTGGATTTCACCCTAGGGATCCTGGTGGCCCTAGCCAGGGTCCATCTAAGAGGGCTACTTCTACATCCGGTTCTGGTTCTTCAGTTGGTAGTAGGAAGAGCAGTGGTTCCAGTTCGAGGTCCCGTGCTAGATTCAGAGGACGTGTCAGGAGATTCTCTCGAGGTCAGTTGTCTGGGCAGCTTGAGAGGTCGAAGAGTTATCATGGTTGTTCGAGTGGGGCTTCGACTAGCCAGTCAGCTCAGTTCGGGCAGTATCAGACAGTGGGATGTTTTATGTGTGGTCAGCAGGATCACTTCAGGAGAGACTGCCCTCTTTTGGCTCAGGGAGCCAGATCTACCCCCACTCAGACTGTTGGTCAGTCTTCTGCTGGCGGGTCGACTAGCGGTGCCTGCACCAGCTCGGTAGGCCGAGCTAGTTCTCAGCAGGGCAGGGCTCAGCGAGGTAGTCCTGTGACACATGCTAGACTGCACGCCATGACCCAGCAGGAGGGCCGTGATTCACCGAAAGTCATTTTTTGTACGTTGTTTATCTTTAATCAACCTGCTTTAACCTTAATTGATCCTGGTGCGACGCACTCTTTTATGTCAAGTAGATTCGCATGTTTTGCAAATGTGTCATCATCACTCCTTATTGGCGAGTGGTATGTTTCTTTACCTGCTGGAGGAGCACTTAAGATAGATTGGGTTTTTAATGGTTGTGGTGTAATGGTTGACGGTTTTTGCCTGGAGGCCAACCTAATTCCTCTAGATCTTACACATGGTGCATTAGTTGATTGCTTCCGTAAAGAAGTAGTGTTTCGAAGTCCAGGAAAACCGGAAATCACTTTCCGTGGTGAGAGGAACATTCTCTCCTCTTGCCTGATTTTGGCCATTACAGCTGAAAAGCTTTTGAATAAAGGTTGTCAGGCTTACTTGGCTCACATTGTGGATACAAAGAGGGAGGTGTTGAACATTGAGGATATTCCTGTGGTCAGGAAGTTTCCGGATGTGTTTCCTGATGAACTACCTGGTTTGCCTGCAGAAAGAGAAATAGACTTTACCATTGAATTGCTCCCTGGTACTACACCTATATATCAGGCACCTTATAGAATGGCCCCAGCTGAGTTAAAAGAGTTGAAGACCCAGTTACAGGAGTTGTTGGATAAAGGTTTCATTCGGCCAAGTGTGTCCCCTTGGGGTGCTCCGGTGCTTTTTGTTAAGAAGAAGGATGGCACTTTGAGATTGTGTATTGATTATAGAAAATTGAATAAGGTCACAGTGAAGAACAAGTATCCATTACCACGGATTGATGATTTATTTGATCAATTGCGGGGTGCCAAAGTCTTTTCTAAGATTGATTTGAGGACAGGTTATCACCAGTTATGGATAAGAGAGTCCGATGTACCCAAGACCGCATTCCGATCACGTTATGGTCACTACGAGTTTGTGGTGATGCCTTTTGGATTAACCAATGCTCCTACAGCCTTTATGGATCTCATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

518

Amino Acids

56.85

Weight (kDa)

9.25

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 175 - 276 1.1e-14 Retroviral aspartyl protease
RVT_1 PF00078 423 - 518 2e-18 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
AasI GACNNNNNNGTC 1 cut(s) 304
Acc36I ACCTGC 3 cut(s) 79, 622, 736
AccB1I GGYRCC 3 cut(s) 458, 1150, 1385
AccI GTMKAC 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 1054
AciI CCGC 4 cut(s) 444, 456, 1381, 1464
AclWI GGATC 5 cut(s) 86, 99, 369, 626, 1551
AcoI YGGCCR 2 cut(s) 939, 1229
AcuI CTGAAG 2 cut(s) 138, 352
AdeI CACNNNGTG 2 cut(s) 833, 997
AfaI GTAC 4 cut(s) 17, 592, 1132, 1455
AfiI CCNNNNNNNGG 8 cut(s) 109, 110, 189, 388, 559, 734, 937, 1201
AflII CTTAAG 1 cut(s) 743
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 5 cut(s) 964, 1021, 1118, 1189, 1318
AhdI GACNNNNNGTC 2 cut(s) 58, 426
AjiI CACGTC 1 cut(s) 215
AjnI CCWGG 7 cut(s) 94, 108, 634, 795, 877, 1078, 1126
AjuI GAANNNNNNNTTGG 2 cut(s) 1451, 1483
AloI GAACNNNNNNTCC 2 cut(s) 905, 937
AluBI AGCT 7 cut(s) 253, 311, 471, 485, 950, 958, 1172
AluI AGCT 7 cut(s) 253, 311, 471, 485, 950, 958, 1172
Alw21I GWGCWC 2 cut(s) 742, 1255
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 5 cut(s) 86, 99, 369, 626, 1551
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 1054
AoxI GGCC 7 cut(s) 100, 478, 562, 801, 939, 1164, 1229
ApeKI GCWGC 1 cut(s) 250
AspA2I CCTAGG 1 cut(s) 86
AspS9I GGNCC 5 cut(s) 101, 113, 192, 562, 1165
AsuHPI GGTGA 6 cut(s) 60, 74, 564, 917, 1418, 1513
AsuII TTCGAA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 113, 192
AvrII CCTAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 941
BamHI GGATCC 1 cut(s) 91
BanI GGYRCC 3 cut(s) 458, 1150, 1385
BanII GRGCYC 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 426, 1196
Bbv12I GWGCWC 2 cut(s) 742, 1255
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 262
BccI CCATC 2 cut(s) 124, 1274
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
BciVI GTATCC 2 cut(s) 994, 1353
BclI TGATCA 1 cut(s) 1372
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 8 cut(s) 87, 105, 201, 300, 453, 486, 534, 818
BfmI CTRYAG 2 cut(s) 1089, 1530
BfrI CTTAAG 1 cut(s) 743
BfuAI ACCTGC 3 cut(s) 79, 622, 736
BfuI GTATCC 2 cut(s) 994, 1353
BglII AGATCT 2 cut(s) 404, 820
BisI GCNGC 1 cut(s) 251
BlnI CCTAGG 1 cut(s) 86
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
Bme18I GGWCC 2 cut(s) 113, 192
BmeRI GACNNNNNGTC 2 cut(s) 58, 426
BmeT110I CYCGRG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 5 cut(s) 101, 113, 192, 562, 1165
BmiI GGNNCC 9 cut(s) 93, 114, 181, 194, 400, 460, 1152, 1167, 1387
BmrFI CCNGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
BmrI ACTGGG 1 cut(s) 1189
BmsI GCATC 1 cut(s) 1494
BmuI ACTGGG 1 cut(s) 1189
BpiI GAAGAC 2 cut(s) 426, 1196
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 214, 246
BpmI CTGGAG 2 cut(s) 753, 818
Bpu10I CCTNAGC 2 cut(s) 30, 393
Bpu1102I GCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 871
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 7 cut(s) 48, 86, 109, 901, 1126, 1244, 1352
BsaWI WCCGGW 4 cut(s) 140, 886, 1054, 1255
BsaXI ACNNNNNCTCC 4 cut(s) 905, 935, 1510, 1540
Bsc4I CCNNNNNNNGG 8 cut(s) 109, 110, 189, 388, 559, 734, 937, 1201
Bse1I ACTGG 4 cut(s) 183, 304, 1195, 1429
BseAI TCCGGA 1 cut(s) 1054
BseBI CCWGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
BseDI CCNNGG 7 cut(s) 48, 86, 109, 901, 1126, 1244, 1352
BseGI GGATG 4 cut(s) 137, 344, 1063, 1285
BseLI CCNNNNNNNGG 8 cut(s) 109, 110, 189, 388, 559, 734, 937, 1201
BseMII CTCAG 7 cut(s) 21, 326, 407, 431, 506, 521, 1164
BseNI ACTGG 4 cut(s) 183, 304, 1195, 1429
BseRI GAGGAG 2 cut(s) 750, 913
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 2 cut(s) 552, 1168
BsgI GTGCAG 2 cut(s) 448, 524
BshFI GGCC 7 cut(s) 102, 480, 564, 803, 941, 1166, 1231
BshNI GGYRCC 3 cut(s) 458, 1150, 1385
BsiHKAI GWGCWC 2 cut(s) 742, 1255
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 4 cut(s) 141, 887, 1055, 1256
BslFI GGGAC 2 cut(s) 178, 1225
BslI CCNNNNNNNGG 8 cut(s) 109, 110, 189, 388, 559, 734, 937, 1201
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 178, 1225
BsmI GAATGC 1 cut(s) 1466
BsnI GGCC 7 cut(s) 102, 480, 564, 803, 941, 1166, 1231
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 871
Bsp1286I GDGCHC 3 cut(s) 508, 742, 1255
Bsp13I TCCGGA 1 cut(s) 1054
Bsp143I GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 4 cut(s) 444, 456, 1381, 1464
BspANI GGCC 7 cut(s) 102, 480, 564, 803, 941, 1166, 1231
BspCNI CTCAG 7 cut(s) 22, 325, 406, 430, 505, 520, 1165
BspEI TCCGGA 1 cut(s) 1054
BspHI TCATGA 1 cut(s) 1548
BspLI GGNNCC 9 cut(s) 93, 114, 181, 194, 400, 460, 1152, 1167, 1387
BspMAI CTGCAG 1 cut(s) 1093
BspMI ACCTGC 3 cut(s) 79, 622, 736
BspPI GGATC 5 cut(s) 86, 99, 369, 626, 1551
BspQI GCTCTTC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 871
BspT107I GGYRCC 3 cut(s) 458, 1150, 1385
BspTI CTTAAG 1 cut(s) 743
BsrI ACTGG 4 cut(s) 183, 304, 1195, 1429
BssECI CCNNGG 7 cut(s) 48, 86, 109, 901, 1126, 1244, 1352
BssMI GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
BssT1I CCWWGG 3 cut(s) 48, 86, 1244
Bst2UI CCWGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
Bst4CI ACNGT 5 cut(s) 15, 334, 424, 788, 1330
Bst6I CTCTTC 2 cut(s) 164, 260
BstAFI CTTAAG 1 cut(s) 743
BstAPI GCANNNNNTGC 1 cut(s) 677
BstBI TTCGAA 1 cut(s) 871
BstC8I GCNNGC 4 cut(s) 442, 463, 543, 1089
BstDEI CTNAG 9 cut(s) 30, 120, 312, 393, 417, 492, 507, 1173, 1401
BstDSI CCRYGG 3 cut(s) 48, 901, 1352
BstENI CCTNNNNNAGG 1 cut(s) 732
BstF5I GGATG 4 cut(s) 137, 344, 1063, 1285
BstKTI GATC 8 cut(s) 94, 364, 407, 634, 823, 1375, 1475, 1546
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
BstMWI GCNNNNNNNGC 8 cut(s) 398, 462, 477, 677, 737, 947, 986, 1532
BstNI CCWGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
BstNSI RCATGY 2 cut(s) 533, 675
BstSCI CCNGG 7 cut(s) 94, 108, 634, 795, 877, 1078, 1126
BstSFI CTRYAG 2 cut(s) 1089, 1530
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 426, 1196
BstX2I RGATCY 4 cut(s) 91, 404, 820, 1543
BstYI RGATCY 4 cut(s) 91, 404, 820, 1543
BsuI GTATCC 2 cut(s) 994, 1353
BsuRI GGCC 7 cut(s) 102, 480, 564, 803, 941, 1166, 1231
BtgI CCRYGG 3 cut(s) 48, 901, 1352
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 4 cut(s) 137, 344, 1063, 1285
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 3 cut(s) 181, 339, 1335
BveI ACCTGC 3 cut(s) 79, 622, 736
Cac8I GCNNGC 4 cut(s) 442, 463, 543, 1089
CciI TCATGA 1 cut(s) 1548
Cfr13I GGNCC 5 cut(s) 101, 113, 192, 562, 1165
CseI GACGC 1 cut(s) 652
CsiI ACCWGGT 1 cut(s) 1078
Csp6I GTAC 4 cut(s) 16, 591, 1131, 1454
CviAII CATG 7 cut(s) 49, 275, 530, 547, 672, 830, 1549
CviQI GTAC 4 cut(s) 16, 591, 1131, 1454
DdeI CTNAG 9 cut(s) 30, 120, 312, 393, 417, 492, 507, 1173, 1401
DpnI GATC 8 cut(s) 93, 363, 406, 633, 822, 1374, 1474, 1545
DpnII GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
DraIII CACNNNGTG 2 cut(s) 833, 997
DrdI GACNNNNNNGTC 1 cut(s) 304
DriI GACNNNNNGTC 2 cut(s) 58, 426
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 2 cut(s) 939, 1229
Eam1104I CTCTTC 2 cut(s) 164, 260
Eam1105I GACNNNNNGTC 2 cut(s) 58, 426
EarI CTCTTC 2 cut(s) 164, 260
Eco130I CCWWGG 3 cut(s) 48, 86, 1244
Eco24I GRGCYC 1 cut(s) 508
Eco47I GGWCC 2 cut(s) 113, 192
Eco57I CTGAAG 2 cut(s) 138, 352
Eco88I CYCGRG 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 732
EcoO109I RGGNCCY 1 cut(s) 192
EcoRII CCWGG 7 cut(s) 94, 108, 634, 795, 877, 1078, 1126
EcoT14I CCWWGG 3 cut(s) 48, 86, 1244
EcoT38I GRGCYC 1 cut(s) 508
ErhI CCWWGG 3 cut(s) 48, 86, 1244
FaeI CATG 7 cut(s) 52, 278, 533, 550, 675, 833, 1552
FaqI GGGAC 2 cut(s) 178, 1225
FatI CATG 7 cut(s) 48, 274, 529, 546, 671, 829, 1548
FauI CCCGC 2 cut(s) 437, 1374
FbaI TGATCA 1 cut(s) 1372
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 4 cut(s) 124, 351, 1070, 1292
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 8 cut(s) 87, 105, 201, 300, 453, 486, 534, 818
GluI GCNGC 1 cut(s) 251
GsaI CCCAGC 2 cut(s) 556, 1172
GsuI CTGGAG 2 cut(s) 753, 818
HaeIII GGCC 7 cut(s) 102, 480, 564, 803, 941, 1166, 1231
HapII CCGG 4 cut(s) 141, 887, 1055, 1256
HgaI GACGC 1 cut(s) 652
Hin1II CATG 7 cut(s) 52, 278, 533, 550, 675, 833, 1552
HincII GTYRAC 2 cut(s) 450, 784
HindII GTYRAC 2 cut(s) 450, 784
HindIII AAGCTT 1 cut(s) 956
HinfI GANTC 7 cut(s) 59, 65, 204, 225, 569, 666, 1445
HpaII CCGG 4 cut(s) 141, 887, 1055, 1256
HphI GGTGA 6 cut(s) 60, 74, 564, 917, 1418, 1513
Hpy166II GTNNAC 2 cut(s) 450, 784
Hpy188I TCNGA 6 cut(s) 64, 209, 330, 420, 1450, 1472
Hpy188III TCNNGA 8 cut(s) 220, 231, 370, 818, 1045, 1055, 1067, 1549
Hpy8I GTNNAC 2 cut(s) 450, 784
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 1 cut(s) 1270
HpyCH4III ACNGT 5 cut(s) 15, 334, 424, 788, 1330
HpyCH4IV ACGT 3 cut(s) 214, 593, 1477
HpyCH4V TGCA 5 cut(s) 465, 541, 680, 836, 1091
HpyF10VI GCNNNNNNNGC 8 cut(s) 398, 462, 477, 677, 737, 947, 986, 1532
HpyF3I CTNAG 9 cut(s) 30, 120, 312, 393, 417, 492, 507, 1173, 1401
HpySE526I ACGT 3 cut(s) 214, 593, 1477
Hsp92II CATG 7 cut(s) 52, 278, 533, 550, 675, 833, 1552
Kpn2I TCCGGA 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 1372
Kzo9I GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 5 cut(s) 398, 737, 1128, 1258, 1531
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 1494
MabI ACCWGGT 1 cut(s) 1078
MaeI CTAG 8 cut(s) 87, 105, 201, 300, 453, 486, 534, 818
MaeII ACGT 3 cut(s) 214, 593, 1477
MaeIII GTNAC 4 cut(s) 523, 1197, 1324, 1484
MalI GATC 8 cut(s) 93, 363, 406, 633, 822, 1374, 1474, 1545
MboI GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
MboII GAAGA 7 cut(s) 144, 181, 277, 426, 1201, 1285, 1345
MfeI CAATTG 1 cut(s) 1376
MflI RGATCY 4 cut(s) 91, 404, 820, 1543
MhlI GDGCHC 3 cut(s) 508, 742, 1255
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 6 cut(s) 627, 810, 1118, 1313, 1376, 1552
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 3 cut(s) 59, 68, 1454
MmeI TCCRAC 2 cut(s) 42, 1191
Mox20I TGGCCA 1 cut(s) 941
MroI TCCGGA 1 cut(s) 1054
MscI TGGCCA 1 cut(s) 941
MseI TTAA 8 cut(s) 606, 620, 626, 744, 762, 1178, 1269, 1517
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 2 cut(s) 950, 1172
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 4 cut(s) 141, 887, 1055, 1256
MspR9I CCNGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
MunI CAATTG 1 cut(s) 1376
Mva1269I GAATGC 1 cut(s) 1466
MvaI CCWGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
MwoI GCNNNNNNNGC 8 cut(s) 398, 462, 477, 677, 737, 947, 986, 1532
NcoI CCATGG 1 cut(s) 48
NdeII GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
NlaIII CATG 7 cut(s) 52, 278, 533, 550, 675, 833, 1552
NlaIV GGNNCC 9 cut(s) 93, 114, 181, 194, 400, 460, 1152, 1167, 1387
NmeAIII GCCGAG 1 cut(s) 506
NmuCI GTSAC 3 cut(s) 523, 1324, 1484
NspI RCATGY 2 cut(s) 533, 675
NspV TTCGAA 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 231
PagI TCATGA 1 cut(s) 1548
PaqCI CACCTGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 164
PctI GAATGC 1 cut(s) 1466
PfeI GAWTC 4 cut(s) 204, 225, 569, 666
PfoI TCCNGGA 1 cut(s) 877
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 3 cut(s) 59, 67, 1453
PpsI GAGTC 3 cut(s) 59, 67, 1453
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 7 cut(s) 94, 108, 634, 795, 877, 1078, 1126
PspFI CCCAGC 2 cut(s) 552, 1168
PspGI CCWGG 7 cut(s) 94, 108, 634, 795, 877, 1078, 1126
PspN4I GGNNCC 9 cut(s) 93, 114, 181, 194, 400, 460, 1152, 1167, 1387
PspPI GGNCC 5 cut(s) 101, 113, 192, 562, 1165
PspPPI RGGWCCY 1 cut(s) 192
PstI CTGCAG 1 cut(s) 1093
PsuI RGATCY 4 cut(s) 91, 404, 820, 1543
PvuII CAGCTG 2 cut(s) 950, 1172
RsaI GTAC 4 cut(s) 17, 592, 1132, 1455
RsaNI GTAC 4 cut(s) 16, 591, 1131, 1454
SalI GTCGAC 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 8 cut(s) 606, 620, 626, 744, 762, 1178, 1269, 1517
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 8 cut(s) 91, 361, 404, 631, 820, 1372, 1472, 1543
Sau96I GGNCC 5 cut(s) 101, 113, 192, 562, 1165
SchI GAGTC 3 cut(s) 59, 68, 1454
ScrFI CCNGG 7 cut(s) 96, 110, 636, 797, 879, 1080, 1128
SduI GDGCHC 3 cut(s) 508, 742, 1255
SexAI ACCWGGT 1 cut(s) 1078
SfaNI GCATC 1 cut(s) 1494
SfcI CTRYAG 2 cut(s) 1089, 1530
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 871
SinI GGWCC 2 cut(s) 113, 192
SlaI CTCGAG 1 cut(s) 231
SmlI CTYRAG 3 cut(s) 231, 254, 743
SmoI CTYRAG 3 cut(s) 231, 254, 743
Sse9I AATT 6 cut(s) 627, 810, 1118, 1313, 1376, 1552
SsiI CCGC 4 cut(s) 444, 456, 1381, 1464
SspMI CTAG 8 cut(s) 87, 105, 201, 300, 453, 486, 534, 818
StyD4I CCNGG 7 cut(s) 94, 108, 634, 795, 877, 1078, 1126
StyI CCWWGG 3 cut(s) 48, 86, 1244
TaaI ACNGT 5 cut(s) 15, 334, 424, 788, 1330
TaiI ACGT 3 cut(s) 217, 596, 1480
TaqI TCGA 7 cut(s) 188, 232, 263, 284, 296, 449, 871
TasI AATT 6 cut(s) 627, 810, 1118, 1313, 1376, 1552
TfiI GAWTC 4 cut(s) 204, 225, 569, 666
Tru1I TTAA 8 cut(s) 606, 620, 626, 744, 762, 1178, 1269, 1517
Tru9I TTAA 8 cut(s) 606, 620, 626, 744, 762, 1178, 1269, 1517
TscAI CASTG 3 cut(s) 181, 339, 1335
TseFI GTSAC 3 cut(s) 523, 1324, 1484
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 3 cut(s) 523, 1324, 1484
TspDTI ATGAA 2 cut(s) 1086, 1213
TspGWI ACGGA 3 cut(s) 842, 890, 1369
TspRI CASTG 3 cut(s) 181, 339, 1335
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 113, 192
XagI CCTNNNNNAGG 1 cut(s) 732
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 2 cut(s) 533, 675
XhoI CTCGAG 1 cut(s) 231
XmaJI CCTAGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 8 cut(s) 87, 105, 201, 300, 453, 486, 534, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.