Rmu_sc0004751.1_g000014

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004751.1
OG0000094
Physical Location & Seq
Reverse (-)
66248 .. 68242
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004751.1_g000014.1.cds

Sequence Viewer

Length: 1194 bp
atgctggaggagctgatatccataagagatcagcctagccactccattccagctccggatctcgatctacaagcgcttaagttcggttcccttccaccaaactcagggtcacctgccatggcagcgagacttgggtcagcttcttccactagaggagtctctttagctacacatacagtggctgcaagtggtagtatttctagacctcagcctagcttgccacaaaatttagctcacaatgaggtaattcttaggtttgctagtgagtttgccatggaagtggtaccaccctcttccaacatgattagcagtagatcgattatacctagctcgggggaggtcttgataactaatgcctcaggaatagtaacatcaaccatacacagcaccaatgttactcgaggtccttacttcatgccttatcctcaacatggtagtcagatgggaccagaacccttcactatgagttactccggaccctattcccattctcccattaacttcctgaaaataccacctcagcctactctgccttttgcggttccttactgtcaaggcactcaaaactccactctgtttcaacctgtgcagcatcaatcttatccggtcaacgaccctaatttgccaactatgaaacaaatgaagctggaatttagtgtatatagtggtggggatccagttgaatggctcaacaagatcggactatctgattttctcatgaaggagtttagtgggcgtaatgtggtggattatcaagcagccttggcaagaatgtctcaagtgggatatgtggaacaatatatggaccagtttacaaaactatccagaagggcccctggattttctcaacaggtgcttctttcttgtggattgaaggataccatcagggcggatgttaaagctcaaaagcctaggacattgtacgaggcttgtgagttggccaaggtatatgaggaaagacaactgaatcttagaagccactctagaggaatgtttgtgcacaaagctactcatgccactcctagattaggaaacacatatactggaccatttggacaattgagaaatcatcctcctgcagcacaaaatagacatccacctcccccagttgcagccaacccagttggagggcacaggagattaactcaagcagaatcaggaaagatgagccagaaaccaatgtttcttctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

397

Amino Acids

43.48

Weight (kDa)

9.43

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 121
Acc65I GGTACC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 283
AccIII TCCGGA 2 cut(s) 55, 473
AciI CCGC 2 cut(s) 539, 890
AclWI GGATC 3 cut(s) 66, 668, 681
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 2 cut(s) 226, 650
AfaI GTAC 2 cut(s) 285, 923
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 5 cut(s) 104, 332, 431, 1028, 1127
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 3 cut(s) 581, 683, 874
AjnI CCWGG 1 cut(s) 835
Alw21I GWGCWC 1 cut(s) 1002
Alw26I GTCTC 3 cut(s) 121, 163, 780
Alw44I GTGCAC 1 cut(s) 998
AlwI GGATC 3 cut(s) 66, 668, 681
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 2 cut(s) 331, 399
Aor13HI TCCGGA 2 cut(s) 55, 473
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 2 cut(s) 831, 939
ApaI GGGCCC 1 cut(s) 835
ApaLI GTGCAC 1 cut(s) 998
ApeKI GCWGC 6 cut(s) 122, 182, 589, 758, 1079, 1112
ApoI RAATTY 2 cut(s) 226, 650
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp718I GGTACC 1 cut(s) 283
AspA2I CCTAGG 1 cut(s) 911
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 7 cut(s) 404, 446, 476, 805, 831, 832, 1046
AsuHPI GGTGA 1 cut(s) 102
AvaI CYCGRG 2 cut(s) 331, 399
AvaII GGWCC 5 cut(s) 404, 446, 476, 805, 1046
AvrII CCTAGG 1 cut(s) 911
AxyI CCTNAGG 1 cut(s) 358
BaeGI GKGCMC 3 cut(s) 835, 1002, 1134
BalI TGGCCA 1 cut(s) 941
BamHI GGATCC 1 cut(s) 673
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 835
Bbv12I GWGCWC 1 cut(s) 1002
BbvCI CCTCAGC 2 cut(s) 207, 519
BbvI GCAGC 6 cut(s) 134, 169, 601, 770, 1091, 1124
BccI CCATC 2 cut(s) 436, 890
BciT130I CCWGG 1 cut(s) 837
BciVI GTATCC 1 cut(s) 871
BcoDI GTCTC 3 cut(s) 121, 163, 780
BfaI CTAG 9 cut(s) 36, 150, 201, 213, 261, 327, 912, 984, 1023
BfmI CTRYAG 1 cut(s) 1077
BfoI RGCGCY 1 cut(s) 77
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 121
BfuI GTATCC 1 cut(s) 871
BisI GCNGC 6 cut(s) 123, 183, 590, 759, 1080, 1113
BlnI CCTAGG 1 cut(s) 911
BlsI GCNGC 6 cut(s) 124, 184, 591, 760, 1081, 1114
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 5 cut(s) 404, 446, 476, 805, 1046
BmeT110I CYCGRG 2 cut(s) 331, 399
BmgT120I GGNCC 7 cut(s) 404, 446, 476, 805, 831, 832, 1046
BmiI GGNNCC 8 cut(s) 88, 285, 447, 478, 543, 675, 833, 834
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 2 cut(s) 1100, 1115
BmsI GCATC 1 cut(s) 601
BmuI ACTGGG 2 cut(s) 1100, 1115
BoxI GACNNNNGTC 1 cut(s) 133
BplI GAGNNNNNCTC 2 cut(s) 1129, 1161
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 2 cut(s) 207, 519
BpuEI CTTGAG 2 cut(s) 762, 1131
Bsa29I ATCGAT 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 6 cut(s) 117, 273, 762, 835, 911, 942
BsaWI WCCGGW 3 cut(s) 55, 473, 604
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 332, 431, 1028, 1127
Bse1I ACTGG 5 cut(s) 677, 808, 1048, 1106, 1121
Bse21I CCTNAGG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 63
BseAI TCCGGA 2 cut(s) 55, 473
BseBI CCWGG 1 cut(s) 837
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 6 cut(s) 117, 273, 762, 835, 911, 942
BseGI GGATG 3 cut(s) 898, 1069, 1093
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 5 cut(s) 104, 332, 431, 1028, 1127
BseMII CTCAG 4 cut(s) 117, 221, 372, 533
BseNI ACTGG 5 cut(s) 677, 808, 1048, 1106, 1121
BseRI GAGGAG 2 cut(s) 23, 168
BseSI GKGCMC 3 cut(s) 835, 1002, 1134
BseXI GCAGC 6 cut(s) 134, 169, 601, 770, 1091, 1124
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 2 cut(s) 833, 941
BshNI GGYRCC 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 1002
BsiHKCI CYCGRG 2 cut(s) 331, 399
BsiSI CCGG 3 cut(s) 56, 474, 605
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 5 cut(s) 104, 332, 431, 1028, 1127
BsmAI GTCTC 3 cut(s) 121, 163, 780
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 2 cut(s) 833, 941
BsoBI CYCGRG 2 cut(s) 331, 399
Bsp120I GGGCCC 1 cut(s) 831
Bsp1286I GDGCHC 3 cut(s) 835, 1002, 1134
Bsp13I TCCGGA 2 cut(s) 55, 473
Bsp143I GATC 6 cut(s) 28, 58, 64, 314, 673, 696
Bsp19I CCATGG 2 cut(s) 117, 273
BspACI CCGC 2 cut(s) 539, 890
BspANI GGCC 2 cut(s) 833, 941
BspCNI CTCAG 4 cut(s) 116, 220, 371, 532
BspDI ATCGAT 1 cut(s) 317
BspEI TCCGGA 2 cut(s) 55, 473
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 8 cut(s) 88, 285, 447, 478, 543, 675, 833, 834
BspMAI CTGCAG 1 cut(s) 1081
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 3 cut(s) 66, 668, 681
BspT107I GGYRCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 77
BsrI ACTGG 5 cut(s) 677, 808, 1048, 1106, 1121
BssECI CCNNGG 6 cut(s) 117, 273, 762, 835, 911, 942
BssMI GATC 6 cut(s) 28, 58, 64, 314, 673, 696
BssT1I CCWWGG 5 cut(s) 117, 273, 762, 911, 942
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 178, 551
Bst6I CTCTTC 1 cut(s) 298
BstAFI CTTAAG 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 6 cut(s) 103, 207, 251, 358, 519, 971
BstDSI CCRYGG 2 cut(s) 117, 273
BstEII GGTNACC 1 cut(s) 108
BstENI CCTNNNNNAGG 1 cut(s) 1026
BstF5I GGATG 3 cut(s) 898, 1069, 1093
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 6 cut(s) 31, 61, 67, 317, 676, 699
BstMAI GTCTC 3 cut(s) 121, 163, 780
BstMBI GATC 6 cut(s) 28, 58, 64, 314, 673, 696
BstMWI GCNNNNNNNGC 6 cut(s) 10, 122, 217, 529, 764, 1013
BstNI CCWGG 1 cut(s) 837
BstPAI GACNNNNGTC 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 835
BstSFI CTRYAG 1 cut(s) 1077
BstSLI GKGCMC 3 cut(s) 835, 1002, 1134
BstV1I GCAGC 6 cut(s) 134, 169, 601, 770, 1091, 1124
BstX2I RGATCY 2 cut(s) 58, 673
BstXI CCANNNNNNTGG 2 cut(s) 280, 684
BstYI RGATCY 2 cut(s) 58, 673
Bsu15I ATCGAT 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 358
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 2 cut(s) 833, 941
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 2 cut(s) 117, 273
BtsCI GGATG 3 cut(s) 898, 1069, 1093
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 717
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 7 cut(s) 404, 446, 476, 805, 831, 832, 1046
ClaI ATCGAT 1 cut(s) 317
Csp6I GTAC 2 cut(s) 284, 922
CviAII CATG 7 cut(s) 118, 274, 301, 415, 431, 718, 1013
CviQI GTAC 2 cut(s) 284, 922
DdeI CTNAG 6 cut(s) 103, 207, 251, 358, 519, 971
DpnI GATC 6 cut(s) 30, 60, 66, 316, 675, 698
DpnII GATC 6 cut(s) 28, 58, 64, 314, 673, 696
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
EciI GGCGGA 1 cut(s) 905
Eco130I CCWWGG 5 cut(s) 117, 273, 762, 911, 942
Eco24I GRGCYC 1 cut(s) 835
Eco32I GATATC 1 cut(s) 18
Eco47I GGWCC 5 cut(s) 404, 446, 476, 805, 1046
Eco47III AGCGCT 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 358
Eco88I CYCGRG 2 cut(s) 331, 399
Eco91I GGTNACC 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 1026
EcoO109I RGGNCCY 3 cut(s) 404, 831, 832
EcoO65I GGTNACC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 835
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 5 cut(s) 117, 273, 762, 911, 942
EcoT38I GRGCYC 1 cut(s) 835
ErhI CCWWGG 5 cut(s) 117, 273, 762, 911, 942
FaeI CATG 7 cut(s) 121, 277, 304, 418, 434, 721, 1016
FaqI GGGAC 1 cut(s) 459
FatI CATG 7 cut(s) 117, 273, 300, 414, 430, 717, 1012
Fnu4HI GCNGC 6 cut(s) 123, 183, 590, 759, 1080, 1113
FokI GGATG 3 cut(s) 905, 1056, 1080
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 6 cut(s) 123, 183, 590, 759, 1080, 1113
FspBI CTAG 9 cut(s) 36, 150, 201, 213, 261, 327, 912, 984, 1023
GlaI GCGC 1 cut(s) 75
GluI GCNGC 6 cut(s) 123, 183, 590, 759, 1080, 1113
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 2 cut(s) 833, 941
HapII CCGG 3 cut(s) 56, 474, 605
HhaI GCGC 1 cut(s) 76
Hin1II CATG 7 cut(s) 121, 277, 304, 418, 434, 721, 1016
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 3 cut(s) 156, 967, 1154
HpaII CCGG 3 cut(s) 56, 474, 605
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 3 cut(s) 610, 813, 1000
Hpy188I TCNGA 3 cut(s) 441, 701, 709
Hpy8I GTNNAC 3 cut(s) 610, 813, 1000
HpyAV CCTTC 5 cut(s) 101, 466, 715, 822, 868
HpyCH4III ACNGT 2 cut(s) 178, 551
HpyCH4V TGCA 5 cut(s) 185, 589, 1000, 1079, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 122, 217, 529, 764, 1013
HpyF3I CTNAG 6 cut(s) 103, 207, 251, 358, 519, 971
Hsp92II CATG 7 cut(s) 121, 277, 304, 418, 434, 721, 1016
HspAI GCGC 1 cut(s) 74
Kpn2I TCCGGA 2 cut(s) 55, 473
KpnI GGTACC 1 cut(s) 287
Kzo9I GATC 6 cut(s) 28, 58, 64, 314, 673, 696
LmnI GCTCC 2 cut(s) 10, 58
Lsp1109I GCAGC 6 cut(s) 134, 169, 601, 770, 1091, 1124
LweI GCATC 1 cut(s) 601
MaeI CTAG 9 cut(s) 36, 150, 201, 213, 261, 327, 912, 984, 1023
MaeIII GTNAC 4 cut(s) 108, 367, 394, 467
MalI GATC 6 cut(s) 30, 60, 66, 316, 675, 698
MboI GATC 6 cut(s) 28, 58, 64, 314, 673, 696
MboII GAAGA 3 cut(s) 135, 285, 1178
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 2 cut(s) 58, 673
MhlI GDGCHC 3 cut(s) 835, 1002, 1134
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 5 cut(s) 226, 246, 619, 650, 1058
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 2 cut(s) 321, 1105
Mox20I TGGCCA 1 cut(s) 941
MroI TCCGGA 2 cut(s) 55, 473
MscI TGGCCA 1 cut(s) 941
MseI TTAA 4 cut(s) 78, 498, 897, 1142
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 941
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 3 cut(s) 56, 474, 605
MspR9I CCNGG 1 cut(s) 837
MunI CAATTG 1 cut(s) 1058
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 6 cut(s) 10, 122, 217, 529, 764, 1013
NcoI CCATGG 2 cut(s) 117, 273
NdeII GATC 6 cut(s) 28, 58, 64, 314, 673, 696
NlaIII CATG 7 cut(s) 121, 277, 304, 418, 434, 721, 1016
NlaIV GGNNCC 8 cut(s) 88, 285, 447, 478, 543, 675, 833, 834
NmuCI GTSAC 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 399
PagI TCATGA 1 cut(s) 717
PaqCI CACCTGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 967, 1154
PkrI GCNGC 6 cut(s) 124, 184, 591, 760, 1081, 1114
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 404
PshAI GACNNNNGTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 835
PspEI GGTNACC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 8 cut(s) 88, 285, 447, 478, 543, 675, 833, 834
PspOMI GGGCCC 1 cut(s) 831
PspPI GGNCC 7 cut(s) 404, 446, 476, 805, 831, 832, 1046
PspPPI RGGWCCY 1 cut(s) 404
PspXI VCTCGAGB 1 cut(s) 399
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 58, 673
RsaI GTAC 2 cut(s) 285, 923
RsaNI GTAC 2 cut(s) 284, 922
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 4 cut(s) 78, 498, 897, 1142
SatI GCNGC 6 cut(s) 123, 183, 590, 759, 1080, 1113
Sau3AI GATC 6 cut(s) 28, 58, 64, 314, 673, 696
Sau96I GGNCC 7 cut(s) 404, 446, 476, 805, 831, 832, 1046
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 837
SduI GDGCHC 3 cut(s) 835, 1002, 1134
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 1 cut(s) 1077
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 5 cut(s) 404, 446, 476, 805, 1046
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 4 cut(s) 77, 399, 777, 1146
SmoI CTYRAG 4 cut(s) 77, 399, 777, 1146
Sse9I AATT 5 cut(s) 226, 246, 619, 650, 1058
SsiI CCGC 2 cut(s) 539, 890
SspMI CTAG 9 cut(s) 36, 150, 201, 213, 261, 327, 912, 984, 1023
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 5 cut(s) 117, 273, 762, 911, 942
TaaI ACNGT 2 cut(s) 178, 551
TaqI TCGA 3 cut(s) 63, 317, 400
TasI AATT 5 cut(s) 226, 246, 619, 650, 1058
TfiI GAWTC 2 cut(s) 967, 1154
Tru1I TTAA 4 cut(s) 78, 498, 897, 1142
Tru9I TTAA 4 cut(s) 78, 498, 897, 1142
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 6 cut(s) 122, 182, 589, 758, 1079, 1112
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 4 cut(s) 403, 647, 656, 734
TspRI CASTG 1 cut(s) 183
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 998
VpaK11BI GGWCC 5 cut(s) 404, 446, 476, 805, 1046
XagI CCTNNNNNAGG 1 cut(s) 1026
XapI RAATTY 2 cut(s) 226, 650
XbaI TCTAGA 2 cut(s) 200, 983
XhoI CTCGAG 1 cut(s) 399
XmaJI CCTAGG 1 cut(s) 911
XspI CTAG 9 cut(s) 36, 150, 201, 213, 261, 327, 912, 984, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.