RchiOBHm_Chr2g0109491

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000094
Physical Location & Seq
Reverse (-)
20846449 .. 20847956
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48331

Sequence Viewer

Length: 1314 bp
ATGTTTGGGAAGAGACTTTGTGTTCCTAACGTCGAACCACTTAAACGAGAAATACTTGATGAAGCTCATAACTCTGCGTATGCCCTGCATCCTGGTGGTACAAAAATGTATCGGACTCTTAAAGAGTACTATTGGTGGCCAAACATGAAAAGAGAAATTGCAGCTTTTGTGAGTAAATGTCTAGTGTGCCAGCAAGTGAAAGCGGAAAGGCAAAAACCGTCGGGGTTGTTGCAACCTTTGCCAATTCCGGAATGGAAATGGGATCATCTCACCATGGATTTTATTTACAAGTTAACTCGTACGCAGGATGGTAATGATGGTATTTGGGTGATTGTAGATCGACTCACCAAATCAGCTCATTTTCTGGCGGTTAAAGAAACCTTTAGTTTGGATAAACTGGCAAAGTTGTATGTGGACGAAATTGTAAAGCTTCATGGTGTTCCCGAGTCCATTGTTTCTGATCGCGATGCCCGATTCACATCGAAGTTTTGGAGGAAGGTTCACAAATGTTTGGGAACAAAATTACAATTTAGCACTGCTTTCCATCCTCAAACTGATGGACAATCTGAGCGGACTATACAGACTTTGGAAGACATGTTGAGGGCTTGTTCTCTACAATTTAAAGGAAGTTGGGATAAGCACTTGGCTTTGATGGAGTTTGCATATAACAACAGTTACCATTCGAGTATTGGTATGGCCCCCTACGAAGCTTTGTATGGGAAACAGTGTAGGACCCCCTTGTGTTGGGATGAAGTGGGAGAAAGACAACTTATTGGTCCTGAGATTATTGAAATCACAACAGATAAAGTTAAGGTGATCAGAGAGAGACTTAAGACGGCCCAAAGCAGACAGAAGAGCTACGCAGATAAACATAGGAAGCATCTTGAATTTCAAGTTGGTGATTGGGTATTTCTGAAGTTATCTCCTTGGAAGGGTGTGGTAAGGTTTGGTAAACGAGGGAAACTAAGTCCAAGGTATATGGGTCCCTATGAGATTGTGGAACGAATTGGTCTTGTCGCTTACCGCTTGGCTTTACCTCCACAACTATCTCAAGTACATGATGTATTCCACGTCTCCATGCTTCGCAAGTACATCACTGATCCTTCACATGTGTTACCAGCTCAACCCATTACACTTACAGAAGATTTAACCTATGAAGAAGAACCAGTGCAGATCCTTGATCGTCGAGAGCAAGTACTCCGAAGTAAGGTTATACCTTTGGTTAAGGTATTATGGAGGAATCACCTGATTGAAGAAGCTACTTGGGAACCAGAGGATCAAATGAGGCAACAGTATCCACATCTTTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

437

Amino Acids

51.13

Weight (kDa)

9.12

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 13 - 68 3.1e-19 Integrase zinc binding domain
SH3_Tf2-1 PF24626 300 - 364 5.1e-28 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 571
AccII CGCG 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 4 cut(s) 203, 368, 571, 1024
AclWI GGATC 4 cut(s) 270, 1094, 1168, 1284
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 887
AcuI CTGAAG 1 cut(s) 935
AfaI GTAC 6 cut(s) 100, 128, 301, 1056, 1091, 1197
AfiI CCNNNNNNNGG 3 cut(s) 744, 932, 1207
AflII CTTAAG 1 cut(s) 830
AflIII ACRYGT 2 cut(s) 594, 1108
AgsI TTSAA 4 cut(s) 791, 887, 893, 1253
AjiI CACGTC 1 cut(s) 1072
AjnI CCWGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AluBI AGCT 8 cut(s) 65, 164, 356, 430, 710, 858, 1121, 1259
AluI AGCT 8 cut(s) 65, 164, 356, 430, 710, 858, 1121, 1259
Alw26I GTCTC 3 cut(s) 7, 820, 1078
AlwI GGATC 4 cut(s) 270, 1094, 1168, 1284
Ama87I CYCGRG 1 cut(s) 443
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 3 cut(s) 137, 696, 837
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 887
AspS9I GGNCC 5 cut(s) 697, 732, 776, 838, 983
AsuHPI GGTGA 6 cut(s) 262, 337, 340, 826, 911, 1235
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 3 cut(s) 732, 776, 983
BalI TGGCCA 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 173
BccI CCATC 5 cut(s) 302, 311, 551, 552, 646
BceAI ACGGC 1 cut(s) 852
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 1305
BclI TGATCA 1 cut(s) 816
BcoDI GTCTC 3 cut(s) 7, 820, 1078
BfaI CTAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 830
BfuI GTATCC 1 cut(s) 1305
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmcAI AGTACT 2 cut(s) 128, 1197
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 3 cut(s) 732, 776, 983
BmeT110I CYCGRG 1 cut(s) 443
BmgBI CACGTC 1 cut(s) 1072
BmgT120I GGNCC 5 cut(s) 697, 732, 776, 838, 983
BmiI GGNNCC 5 cut(s) 699, 734, 984, 985, 1269
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 3 cut(s) 97, 457, 889
BpiI GAAGAC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 273, 926, 971
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 744, 932, 1207
Bse1I ACTGG 2 cut(s) 402, 1166
Bse8I GATNNNNATC 1 cut(s) 478
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 3 cut(s) 273, 926, 971
BseGI GGATG 4 cut(s) 88, 313, 544, 754
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 744, 932, 1207
BseMII CTCAG 2 cut(s) 558, 771
BseNI ACTGG 2 cut(s) 402, 1166
BseXI GCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 1190
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 139, 698, 839
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 1 cut(s) 248
BsiWI CGTACG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 3 cut(s) 744, 932, 1207
BsmAI GTCTC 3 cut(s) 7, 820, 1078
BsmBI CGTCTC 1 cut(s) 1078
BsmFI GGGAC 1 cut(s) 969
BsnI GGCC 3 cut(s) 139, 698, 839
BsoBI CYCGRG 1 cut(s) 443
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
Bsp19I CCATGG 1 cut(s) 273
Bsp68I TCGCGA 1 cut(s) 465
BspACI CCGC 4 cut(s) 203, 368, 571, 1024
BspANI GGCC 3 cut(s) 139, 698, 839
BspCNI CTCAG 2 cut(s) 559, 772
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 5 cut(s) 699, 734, 984, 985, 1269
BspPI GGATC 4 cut(s) 270, 1094, 1168, 1284
BspQI GCTCTTC 1 cut(s) 848
BspTI CTTAAG 1 cut(s) 830
BsrBI CCGCTC 1 cut(s) 571
BsrI ACTGG 2 cut(s) 402, 1166
BssECI CCNNGG 3 cut(s) 273, 926, 971
BssMI GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
BssT1I CCWWGG 3 cut(s) 273, 926, 971
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 219, 674, 726, 1293
Bst6I CTCTTC 2 cut(s) 5, 848
BstAFI CTTAAG 1 cut(s) 830
BstAPI GCANNNNNTGC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 567, 780, 965
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 4 cut(s) 88, 313, 544, 754
BstFNI CGCG 1 cut(s) 465
BstKTI GATC 8 cut(s) 265, 340, 463, 819, 1102, 1176, 1183, 1279
BstMAI GTCTC 3 cut(s) 7, 820, 1078
BstMBI GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 2 cut(s) 598, 1112
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 1173
BstYI RGATCY 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 1305
BsuRI GGCC 3 cut(s) 139, 698, 839
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 480
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 4 cut(s) 88, 313, 544, 754
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 4 cut(s) 534, 731, 1095, 1173
BtuMI TCGCGA 1 cut(s) 465
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 5 cut(s) 697, 732, 776, 838, 983
Csp6I GTAC 6 cut(s) 99, 127, 300, 1055, 1090, 1196
CviAII CATG 7 cut(s) 145, 274, 434, 595, 1058, 1078, 1109
CviQI GTAC 6 cut(s) 99, 127, 300, 1055, 1090, 1196
DdeI CTNAG 3 cut(s) 567, 780, 965
DpnI GATC 8 cut(s) 264, 339, 462, 818, 1101, 1175, 1182, 1278
DpnII GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
DraI TTTAAA 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 5, 848
EarI CTCTTC 2 cut(s) 5, 848
Eco130I CCWWGG 3 cut(s) 273, 926, 971
Eco47I GGWCC 3 cut(s) 732, 776, 983
Eco57I CTGAAG 1 cut(s) 935
Eco88I CYCGRG 1 cut(s) 443
EcoO109I RGGNCCY 2 cut(s) 732, 983
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 273, 926, 971
ErhI CCWWGG 3 cut(s) 273, 926, 971
Esp3I CGTCTC 1 cut(s) 1078
FaeI CATG 7 cut(s) 148, 277, 437, 598, 1061, 1081, 1112
FaqI GGGAC 1 cut(s) 969
FatI CATG 7 cut(s) 144, 273, 433, 594, 1057, 1077, 1108
FbaI TGATCA 1 cut(s) 816
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 4 cut(s) 75, 320, 531, 761
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 3 cut(s) 139, 698, 839
HapII CCGG 1 cut(s) 248
Hin1II CATG 7 cut(s) 148, 277, 437, 598, 1061, 1081, 1112
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 2 cut(s) 428, 708
HinfI GANTC 5 cut(s) 115, 342, 446, 474, 1240
HpaI GTTAAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 248
HphI GGTGA 6 cut(s) 262, 337, 340, 826, 911, 1235
Hpy166II GTNNAC 4 cut(s) 294, 415, 502, 953
Hpy188I TCNGA 6 cut(s) 114, 460, 568, 821, 915, 1202
Hpy188III TCNNGA 6 cut(s) 248, 443, 464, 779, 884, 1187
Hpy8I GTNNAC 4 cut(s) 294, 415, 502, 953
Hpy99I CGWCG 3 cut(s) 35, 223, 1188
HpyAV CCTTC 3 cut(s) 490, 925, 1113
HpyCH4III ACNGT 4 cut(s) 219, 674, 726, 1293
HpyCH4IV ACGT 2 cut(s) 30, 1071
HpyCH4V TGCA 5 cut(s) 88, 161, 232, 662, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 3 cut(s) 567, 780, 965
HpySE526I ACGT 2 cut(s) 30, 1071
Hsp92II CATG 7 cut(s) 148, 277, 437, 598, 1061, 1081, 1112
KflI GGGWCCC 1 cut(s) 983
Kpn2I TCCGGA 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 816
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
LguI GCTCTTC 1 cut(s) 848
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 3 cut(s) 97, 457, 889
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 30, 1071
MaeIII GTNAC 2 cut(s) 674, 1113
MalI GATC 8 cut(s) 264, 339, 462, 818, 1101, 1175, 1182, 1278
MbiI CCGCTC 1 cut(s) 571
MboI GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
MboII GAAGA 7 cut(s) 22, 602, 865, 1154, 1169, 1172, 1265
MflI RGATCY 1 cut(s) 1173
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 8 cut(s) 156, 243, 420, 521, 527, 617, 887, 1005
MluNI TGGCCA 1 cut(s) 139
MlyI GAGTC 3 cut(s) 109, 336, 455
MnlI CCTC 8 cut(s) 486, 558, 594, 950, 1047, 1230, 1267, 1278
Mox20I TGGCCA 1 cut(s) 139
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 139
MseI TTAA 9 cut(s) 42, 120, 293, 372, 621, 810, 831, 1148, 1224
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 139
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 273
NdeII GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
NlaIII CATG 7 cut(s) 148, 277, 437, 598, 1061, 1081, 1112
NlaIV GGNNCC 5 cut(s) 699, 734, 984, 985, 1269
NruI TCGCGA 1 cut(s) 465
NspI RCATGY 2 cut(s) 598, 1112
PciI ACATGT 2 cut(s) 594, 1108
PciSI GCTCTTC 1 cut(s) 848
PcsI WCGNNNNNNNCGW 1 cut(s) 469
PfeI GAWTC 2 cut(s) 474, 1240
Pfl23II CGTACG 1 cut(s) 299
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 3 cut(s) 109, 336, 454
PpsI GAGTC 3 cut(s) 109, 336, 454
PpuMI RGGWCCY 2 cut(s) 732, 983
PscI ACATGT 2 cut(s) 594, 1108
Psp5II RGGWCCY 2 cut(s) 732, 983
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspLI CGTACG 1 cut(s) 299
PspN4I GGNNCC 5 cut(s) 699, 734, 984, 985, 1269
PspPI GGNCC 5 cut(s) 697, 732, 776, 838, 983
PspPPI RGGWCCY 2 cut(s) 732, 983
PsuI RGATCY 1 cut(s) 1173
RruI TCGCGA 1 cut(s) 465
RsaI GTAC 6 cut(s) 100, 128, 301, 1056, 1091, 1197
RsaNI GTAC 6 cut(s) 99, 127, 300, 1055, 1090, 1196
RseI CAYNNNNRTG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 848
SaqAI TTAA 9 cut(s) 42, 120, 293, 372, 621, 810, 831, 1148, 1224
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 8 cut(s) 262, 337, 460, 816, 1099, 1173, 1180, 1276
Sau96I GGNCC 5 cut(s) 697, 732, 776, 838, 983
ScaI AGTACT 2 cut(s) 128, 1197
SchI GAGTC 3 cut(s) 109, 336, 455
ScrFI CCNGG 1 cut(s) 93
SfaNI GCATC 3 cut(s) 97, 457, 889
SinI GGWCC 3 cut(s) 732, 776, 983
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 830, 1050
SmoI CTYRAG 2 cut(s) 830, 1050
Sse9I AATT 8 cut(s) 156, 243, 420, 521, 527, 617, 887, 1005
SsiI CCGC 4 cut(s) 203, 368, 571, 1024
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 3 cut(s) 273, 926, 971
TaaI ACNGT 4 cut(s) 219, 674, 726, 1293
TaiI ACGT 2 cut(s) 33, 1074
TaqI TCGA 5 cut(s) 33, 340, 482, 683, 1186
TasI AATT 8 cut(s) 156, 243, 420, 521, 527, 617, 887, 1005
TatI WGTACW 4 cut(s) 126, 1054, 1089, 1195
TfiI GAWTC 2 cut(s) 474, 1240
Tru1I TTAA 9 cut(s) 42, 120, 293, 372, 621, 810, 831, 1148, 1224
Tru9I TTAA 9 cut(s) 42, 120, 293, 372, 621, 810, 831, 1148, 1224
TscAI CASTG 4 cut(s) 541, 731, 1102, 1173
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 75, 161, 422, 765, 1170
TspRI CASTG 4 cut(s) 541, 731, 1102, 1173
Vha464I CTTAAG 1 cut(s) 830
VpaK11BI GGWCC 3 cut(s) 732, 776, 983
XapI RAATTY 1 cut(s) 887
XceI RCATGY 2 cut(s) 598, 1112
XcmI CCANNNNNNNNNTGG 2 cut(s) 249, 686
XspI CTAG 1 cut(s) 182
ZrmI AGTACT 2 cut(s) 128, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.