RchiOBHm_Chr6g0286381

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000094
Physical Location & Seq
Forward (+)
49775587 .. 49776784
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25686

Sequence Viewer

Length: 1125 bp
ATGGGAATTTCAGGTGTAATGAGACCCGGATGCAGATCTCGTGCTGGCAGGAACCATTCACCCGCTAGTGAAGGTGATGATGAGCAGGTTCCTCGTGGGTTGTTACGAACCGTGGAGCGGTTGTTTGAGCGTTTTGCAGCTGCACTCCCCAATCCCAGGACTGACTATACTGTGGAGCGTGCCAGACGCCATGGGGCGTATACTTTCTCTAGTGCTCCTACGGAGTCCGTAGCAGGAGACTGGATCACCCGCATGGAGAGAGTATTTGAGTCCTTGGGTTGTCCAGCTGCTAGGAGGGTTCCTTTGGCTATTGACCTCCTAGACAGGGATGCATGGCTTTGGTGGCAGGGTACCAGGAATATGGGTTTTGACCCAACTACCATGACTTGGGAAGAGTTCAAAACGGAGTTCTCAAATCGGTACTATAATCAGGCATCCCAGCACCATCTCCGATTTGAGTTCATGCAGTTGAAGCAGACTGAAGAGATGACTGTGTTACAGTATGAGGAGCGTTTTATTGATTTGTCTCGGTTTGCCCGTGAGTTGGTGGCGACAGAAAAGTTGAAGGTTGATCAGTTTATCAATGGCCTCCTACCTGTATATCGAGATTGGTTGGCGCCTCATGATTATCTGACTTTTAAGTTAGCTGTGGAGGCTGCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCAACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGGATTGCCTCTAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCGCTTCAGGGGACGCTTCAGGAGGCCTGGGCAGACAGGTAGGAGACAGTCCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGAAGACAGGCGATTCCGAGAGACTATCCCCAGTGTGCTACTTGTGGTAGACACCATGCAGGCTCGTGTCTGGCAGGTGTGGGGACTTGTTACCAGTGTGGCCAGTGGGGTCACTACAGGAGAGAATGCCCTCAGTTGACCCAGGGAGTCTTCACTACTACTAGTCAGAGTATGGTTTGTCAGGCAGGAGCAGCACTCAGCCGGGTCGTGGACAGAGAGGGCGTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

374

Amino Acids

41.91

Weight (kDa)

9.34

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 107 - 198 2.1e-13 Retrotransposon gag protein
Ty3_capsid PF19259 123 - 224 9.6e-07 Ty3 transposon capsid-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
Acc36I ACCTGC 2 cut(s) 76, 959
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 350, 616
AccB7I CCANNNNNTGG 2 cut(s) 387, 700
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 3 cut(s) 200, 778, 943
AciI CCGC 4 cut(s) 63, 118, 250, 711
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 994
AcsI RAATTY 1 cut(s) 6
AcuI CTGAAG 3 cut(s) 501, 799, 811
AcyI GRCGYC 3 cut(s) 187, 617, 1116
AfaI GTAC 2 cut(s) 352, 422
AfeI AGCGCT 1 cut(s) 812
AfiI CCNNNNNNNGG 9 cut(s) 117, 156, 325, 387, 544, 700, 722, 723, 1102
AgsI TTSAA 3 cut(s) 400, 472, 565
AhlI ACTAGT 1 cut(s) 1055
AjnI CCWGG 5 cut(s) 155, 353, 835, 860, 1035
AluBI AGCT 4 cut(s) 140, 287, 647, 801
AluI AGCT 4 cut(s) 140, 287, 647, 801
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 5 cut(s) 16, 231, 531, 847, 909
AlwI GGATC 1 cut(s) 251
Aor51HI AGCGCT 1 cut(s) 812
AoxI GGCC 4 cut(s) 586, 725, 833, 994
ApeKI GCWGC 5 cut(s) 137, 140, 287, 656, 1085
ApoI RAATTY 1 cut(s) 6
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 2 cut(s) 619, 813
AspS9I GGNCC 2 cut(s) 713, 725
AsuC2I CCSGG 2 cut(s) 27, 1097
AsuHPI GGTGA 3 cut(s) 51, 86, 238
AvaII GGWCC 1 cut(s) 713
BalI TGGCCA 1 cut(s) 996
BanI GGYRCC 2 cut(s) 350, 616
BauI CACGAG 3 cut(s) 39, 93, 958
BbsI GAAGAC 2 cut(s) 904, 1036
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 5 cut(s) 127, 149, 274, 643, 1097
BccI CCATC 2 cut(s) 453, 736
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 5 cut(s) 157, 355, 837, 862, 1037
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 2 cut(s) 27, 1097
BcoDI GTCTC 5 cut(s) 16, 231, 531, 847, 909
BcuI ACTAGT 1 cut(s) 1055
BfaI CTAG 9 cut(s) 66, 210, 291, 320, 675, 747, 798, 876, 1056
BfmI CTRYAG 1 cut(s) 1009
BfoI RGCGCY 2 cut(s) 620, 814
BfuAI ACCTGC 2 cut(s) 76, 959
BglII AGATCT 1 cut(s) 35
BisI GCNGC 5 cut(s) 138, 141, 288, 657, 1086
BlsI GCNGC 5 cut(s) 139, 142, 289, 658, 1087
Bme1390I CCNGG 7 cut(s) 27, 157, 355, 837, 862, 1037, 1097
Bme18I GGWCC 1 cut(s) 713
BmgT120I GGNCC 2 cut(s) 713, 725
BmiI GGNNCC 8 cut(s) 53, 90, 300, 352, 618, 691, 715, 726
BmrFI CCNGG 7 cut(s) 27, 157, 355, 837, 862, 1037, 1097
BmrI ACTGGG 2 cut(s) 711, 919
BmsI GCATC 4 cut(s) 20, 319, 443, 770
BmuI ACTGGG 2 cut(s) 711, 919
BpiI GAAGAC 2 cut(s) 904, 1036
BplI GAGNNNNNCTC 2 cut(s) 1074, 1106
BpuMI CCSGG 2 cut(s) 27, 1097
BsaBI GATNNNNATC 1 cut(s) 34
BsaHI GRCGYC 3 cut(s) 187, 617, 1116
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 8 cut(s) 111, 155, 190, 273, 836, 861, 1035, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 9 cut(s) 117, 156, 325, 387, 544, 700, 722, 723, 1102
Bse1I ACTGG 7 cut(s) 245, 717, 882, 925, 988, 997, 1120
Bse8I GATNNNNATC 1 cut(s) 34
BseBI CCWGG 5 cut(s) 157, 355, 837, 862, 1037
BseDI CCNNGG 8 cut(s) 111, 155, 190, 273, 836, 861, 1035, 1036
BseGI GGATG 3 cut(s) 35, 334, 434
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 9 cut(s) 117, 156, 325, 387, 544, 700, 722, 723, 1102
BseMII CTCAG 2 cut(s) 1040, 1105
BseNI ACTGG 7 cut(s) 245, 717, 882, 925, 988, 997, 1120
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 5 cut(s) 127, 149, 274, 643, 1097
BseYI CCCAGC 1 cut(s) 438
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 4 cut(s) 588, 727, 835, 996
BshNI GGYRCC 2 cut(s) 350, 616
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 2 cut(s) 27, 1096
BslFI GGGAC 3 cut(s) 699, 834, 991
BslI CCNNNNNNNGG 9 cut(s) 117, 156, 325, 387, 544, 700, 722, 723, 1102
BsmAI GTCTC 5 cut(s) 16, 231, 531, 847, 909
BsmFI GGGAC 3 cut(s) 699, 834, 991
BsmI GAATGC 1 cut(s) 1025
BsnI GGCC 4 cut(s) 588, 727, 835, 996
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 3 cut(s) 35, 243, 571
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 4 cut(s) 63, 118, 250, 711
BspANI GGCC 4 cut(s) 588, 727, 835, 996
BspCNI CTCAG 2 cut(s) 1039, 1104
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 8 cut(s) 53, 90, 300, 352, 618, 691, 715, 726
BspMI ACCTGC 2 cut(s) 76, 959
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 2 cut(s) 350, 616
BspTNI GGTCTC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 7 cut(s) 245, 717, 882, 925, 988, 997, 1120
BssECI CCNNGG 8 cut(s) 111, 155, 190, 273, 836, 861, 1035, 1036
BssMI GATC 3 cut(s) 35, 243, 571
BssNAI GTATAC 1 cut(s) 201
BssNI GRCGYC 3 cut(s) 187, 617, 1116
BssSI CACGAG 3 cut(s) 39, 93, 958
BssT1I CCWWGG 2 cut(s) 190, 273
Bst1107I GTATAC 1 cut(s) 201
Bst2BI CACGAG 3 cut(s) 39, 93, 958
Bst2UI CCWGG 5 cut(s) 157, 355, 837, 862, 1037
Bst4CI ACNGT 6 cut(s) 112, 172, 493, 501, 689, 858
Bst6I CTCTTC 2 cut(s) 387, 477
BstACI GRCGYC 3 cut(s) 187, 617, 1116
BstC8I GCNNGC 3 cut(s) 46, 180, 955
BstDEI CTNAG 3 cut(s) 732, 1026, 1091
BstDSI CCRYGG 2 cut(s) 111, 190
BstF5I GGATG 3 cut(s) 35, 334, 434
BstH2I RGCGCY 2 cut(s) 620, 814
BstHHI GCGC 2 cut(s) 619, 813
BstKTI GATC 3 cut(s) 38, 246, 574
BstMAI GTCTC 5 cut(s) 16, 231, 531, 847, 909
BstMBI GATC 3 cut(s) 35, 243, 571
BstMWI GCNNNNNNNGC 4 cut(s) 343, 472, 653, 1085
BstNI CCWGG 5 cut(s) 157, 355, 837, 862, 1037
BstSCI CCNGG 7 cut(s) 25, 155, 353, 835, 860, 1035, 1095
BstSFI CTRYAG 1 cut(s) 1009
BstV1I GCAGC 5 cut(s) 127, 149, 274, 643, 1097
BstV2I GAAGAC 2 cut(s) 904, 1036
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 35
BstZ17I GTATAC 1 cut(s) 201
BsuRI GGCC 4 cut(s) 588, 727, 835, 996
BtgI CCRYGG 2 cut(s) 111, 190
BtsCI GGATG 3 cut(s) 35, 334, 434
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 5 cut(s) 870, 889, 932, 995, 1004
BveI ACCTGC 2 cut(s) 76, 959
Cac8I GCNNGC 3 cut(s) 46, 180, 955
CciI TCATGA 1 cut(s) 622
CfoI GCGC 2 cut(s) 619, 813
Cfr13I GGNCC 2 cut(s) 713, 725
CseI GACGC 3 cut(s) 195, 831, 1105
Csp6I GTAC 2 cut(s) 351, 421
CviAII CATG 7 cut(s) 191, 253, 333, 382, 463, 623, 950
CviQI GTAC 2 cut(s) 351, 421
DdeI CTNAG 3 cut(s) 732, 1026, 1091
DinI GGCGCC 1 cut(s) 618
DpnI GATC 3 cut(s) 37, 245, 573
DpnII GATC 3 cut(s) 35, 243, 571
EaeI YGGCCR 1 cut(s) 994
Eam1104I CTCTTC 2 cut(s) 387, 477
EarI CTCTTC 2 cut(s) 387, 477
Eco130I CCWWGG 2 cut(s) 190, 273
Eco147I AGGCCT 1 cut(s) 835
Eco31I GGTCTC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 680
Eco47I GGWCC 1 cut(s) 713
Eco47III AGCGCT 1 cut(s) 812
Eco57I CTGAAG 3 cut(s) 501, 799, 811
EcoRII CCWGG 5 cut(s) 155, 353, 835, 860, 1035
EcoRV GATATC 1 cut(s) 680
EcoT14I CCWWGG 2 cut(s) 190, 273
EcoT22I ATGCAT 1 cut(s) 334
EgeI GGCGCC 1 cut(s) 618
EheI GGCGCC 1 cut(s) 618
ErhI CCWWGG 2 cut(s) 190, 273
FaeI CATG 7 cut(s) 194, 256, 336, 385, 466, 626, 953
FaqI GGGAC 3 cut(s) 699, 834, 991
FatI CATG 7 cut(s) 190, 252, 332, 381, 462, 622, 949
FauI CCCGC 2 cut(s) 70, 257
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 3 cut(s) 200, 778, 943
Fnu4HI GCNGC 5 cut(s) 138, 141, 288, 657, 1086
FokI GGATG 3 cut(s) 42, 341, 421
Fsp4HI GCNGC 5 cut(s) 138, 141, 288, 657, 1086
FspBI CTAG 9 cut(s) 66, 210, 291, 320, 675, 747, 798, 876, 1056
GlaI GCGC 2 cut(s) 618, 812
GluI GCNGC 5 cut(s) 138, 141, 288, 657, 1086
GsaI CCCAGC 1 cut(s) 442
HaeII RGCGCY 2 cut(s) 620, 814
HaeIII GGCC 4 cut(s) 588, 727, 835, 996
HapII CCGG 2 cut(s) 27, 1096
HgaI GACGC 3 cut(s) 195, 831, 1105
HhaI GCGC 2 cut(s) 619, 813
Hin1I GRCGYC 3 cut(s) 187, 617, 1116
Hin1II CATG 7 cut(s) 194, 256, 336, 385, 466, 626, 953
Hin6I GCGC 2 cut(s) 617, 811
HinP1I GCGC 2 cut(s) 617, 811
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 5 cut(s) 224, 269, 794, 907, 1041
HpaII CCGG 2 cut(s) 27, 1096
HphI GGTGA 3 cut(s) 51, 86, 238
Hpy166II GTNNAC 5 cut(s) 201, 779, 944, 1032, 1105
Hpy188I TCNGA 5 cut(s) 452, 633, 793, 912, 1062
Hpy188III TCNNGA 4 cut(s) 605, 623, 683, 829
Hpy8I GTNNAC 5 cut(s) 201, 779, 944, 1032, 1105
HpyAV CCTTC 2 cut(s) 65, 559
HpyCH4III ACNGT 6 cut(s) 112, 172, 493, 501, 689, 858
HpyCH4V TGCA 7 cut(s) 33, 137, 143, 332, 466, 761, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 343, 472, 653, 1085
HpyF3I CTNAG 3 cut(s) 732, 1026, 1091
Hsp92I GRCGYC 3 cut(s) 187, 617, 1116
Hsp92II CATG 7 cut(s) 194, 256, 336, 385, 466, 626, 953
HspAI GCGC 2 cut(s) 617, 811
KasI GGCGCC 1 cut(s) 616
KpnI GGTACC 1 cut(s) 354
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 3 cut(s) 35, 243, 571
LmnI GCTCC 5 cut(s) 115, 175, 220, 508, 1082
Lsp1109I GCAGC 5 cut(s) 127, 149, 274, 643, 1097
LweI GCATC 4 cut(s) 20, 319, 443, 770
MaeI CTAG 9 cut(s) 66, 210, 291, 320, 675, 747, 798, 876, 1056
MaeIII GTNAC 4 cut(s) 102, 495, 983, 1004
MalI GATC 3 cut(s) 37, 245, 573
MbiI CCGCTC 1 cut(s) 118
MboI GATC 3 cut(s) 35, 243, 571
MboII GAAGA 4 cut(s) 404, 494, 909, 1036
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 996
MluCI AATT 1 cut(s) 6
MluNI TGGCCA 1 cut(s) 996
Mly113I GGCGCC 1 cut(s) 617
MlyI GAGTC 3 cut(s) 233, 278, 1050
Mox20I TGGCCA 1 cut(s) 996
Mph1103I ATGCAT 1 cut(s) 334
MscI TGGCCA 1 cut(s) 996
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 996
MspA1I CMGCKG 2 cut(s) 140, 287
MspI CCGG 2 cut(s) 27, 1096
MspR9I CCNGG 7 cut(s) 27, 157, 355, 837, 862, 1037, 1097
Mva1269I GAATGC 1 cut(s) 1025
MvaI CCWGG 5 cut(s) 157, 355, 837, 862, 1037
MwoI GCNNNNNNNGC 4 cut(s) 343, 472, 653, 1085
NarI GGCGCC 1 cut(s) 617
NciI CCSGG 2 cut(s) 27, 1097
NcoI CCATGG 1 cut(s) 190
NdeII GATC 3 cut(s) 35, 243, 571
NlaIII CATG 7 cut(s) 194, 256, 336, 385, 466, 626, 953
NlaIV GGNNCC 8 cut(s) 53, 90, 300, 352, 618, 691, 715, 726
NmuCI GTSAC 1 cut(s) 1004
NsiI ATGCAT 1 cut(s) 334
PagI TCATGA 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 959
PasI CCCWGGG 1 cut(s) 1036
PceI AGGCCT 1 cut(s) 835
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 1 cut(s) 1025
PfeI GAWTC 2 cut(s) 794, 907
PflMI CCANNNNNTGG 2 cut(s) 387, 700
PkrI GCNGC 5 cut(s) 139, 142, 289, 658, 1087
PleI GAGTC 3 cut(s) 232, 277, 1049
PluTI GGCGCC 1 cut(s) 620
PpsI GAGTC 3 cut(s) 232, 277, 1049
Psp6I CCWGG 5 cut(s) 155, 353, 835, 860, 1035
PspFI CCCAGC 1 cut(s) 438
PspGI CCWGG 5 cut(s) 155, 353, 835, 860, 1035
PspN4I GGNNCC 8 cut(s) 53, 90, 300, 352, 618, 691, 715, 726
PspPI GGNCC 2 cut(s) 713, 725
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 2 cut(s) 140, 287
RsaI GTAC 2 cut(s) 352, 422
RsaNI GTAC 2 cut(s) 351, 421
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 5 cut(s) 138, 141, 288, 657, 1086
Sau3AI GATC 3 cut(s) 35, 243, 571
Sau96I GGNCC 2 cut(s) 713, 725
SchI GAGTC 3 cut(s) 233, 278, 1050
ScrFI CCNGG 7 cut(s) 27, 157, 355, 837, 862, 1037, 1097
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 4 cut(s) 20, 319, 443, 770
SfcI CTRYAG 1 cut(s) 1009
SfoI GGCGCC 1 cut(s) 618
SinI GGWCC 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 251
SpeI ACTAGT 1 cut(s) 1055
Sse9I AATT 1 cut(s) 6
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 4 cut(s) 63, 118, 250, 711
SspDI GGCGCC 1 cut(s) 616
SspMI CTAG 9 cut(s) 66, 210, 291, 320, 675, 747, 798, 876, 1056
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 7 cut(s) 25, 155, 353, 835, 860, 1035, 1095
StyI CCWWGG 2 cut(s) 190, 273
TaaI ACNGT 6 cut(s) 112, 172, 493, 501, 689, 858
TaqI TCGA 1 cut(s) 604
TaqII GACCGA 1 cut(s) 796
TasI AATT 1 cut(s) 6
TfiI GAWTC 2 cut(s) 794, 907
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 5 cut(s) 877, 889, 932, 995, 1004
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 5 cut(s) 137, 140, 287, 656, 1085
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 1 cut(s) 451
TspGWI ACGGA 3 cut(s) 217, 236, 419
TspRI CASTG 5 cut(s) 877, 889, 932, 995, 1004
Van91I CCANNNNNTGG 2 cut(s) 387, 700
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 1 cut(s) 6
XmiI GTMKAC 3 cut(s) 200, 778, 943
XspI CTAG 9 cut(s) 66, 210, 291, 320, 675, 747, 798, 876, 1056
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.