FvH4_4g15592

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
19370165 .. 19370626
462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15592.t1

Sequence Viewer

Length: 462 bp
ATGGCTTCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCTAGTGTTGTTTGTTAAGAAGAAGGATGGCACCATTAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCATAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCTAAGATTGATTTGAGATCGGGTTATCATCAATTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCTTTTGAACTTACTAATGCACCCACGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTCATAGATGACATATCACTCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

154

Amino Acids

17.82

Weight (kDa)

9.57

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 36 - 150 1.2e-21 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 122, 224
AciI CCGC 2 cut(s) 11, 274
AclWI GGATC 4 cut(s) 203, 271, 284, 390
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 4 cut(s) 19, 28, 157, 353
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 4 cut(s) 203, 271, 284, 390
AoxI GGCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 352
BamHI GGATCC 1 cut(s) 276
BanI GGYRCC 2 cut(s) 122, 224
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 387
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 72, 95
BmiI GGNNCC 3 cut(s) 124, 226, 278
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 83, 191, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 83, 191, 369
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 286
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 2 cut(s) 122, 224
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 94
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 2 cut(s) 11, 274
BspANI GGCC 1 cut(s) 70
BspDI ATCGAT 1 cut(s) 198
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 124, 226, 278
BspPI GGATC 4 cut(s) 203, 271, 284, 390
BspT107I GGYRCC 2 cut(s) 122, 224
BssECI CCNNGG 3 cut(s) 83, 191, 369
BssMI GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
BssT1I CCWWGG 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 2 cut(s) 83, 369
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 7 cut(s) 198, 214, 257, 279, 385, 418, 429
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
BstMWI GCNNNNNNNGC 2 cut(s) 302, 371
BstNSI RCATGY 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 276, 382
BstYI RGATCY 2 cut(s) 276, 382
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 2 cut(s) 83, 369
BtsCI GGATG 1 cut(s) 124
CciI TCATGA 1 cut(s) 387
ClaI ATCGAT 1 cut(s) 198
CviAII CATG 4 cut(s) 76, 84, 379, 388
CviJI RGCY 3 cut(s) 5, 70, 296
CviKI_1 RGCY 3 cut(s) 5, 70, 296
DdeI CTNAG 1 cut(s) 240
DpnI GATC 7 cut(s) 197, 213, 256, 278, 384, 417, 428
DpnII GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
Eco130I CCWWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 4 cut(s) 79, 87, 382, 391
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 75, 83, 378, 387
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 131
FspBI CTAG 2 cut(s) 72, 95
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 4 cut(s) 79, 87, 382, 391
HinfI GANTC 2 cut(s) 31, 157
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 195, 281
Hpy188III TCNNGA 4 cut(s) 315, 388, 424, 454
HpyAV CCTTC 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 40, 138, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 371
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 4 cut(s) 79, 87, 382, 391
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
LpnPI CCDG 2 cut(s) 26, 146
LweI GCATC 1 cut(s) 333
MaeI CTAG 2 cut(s) 72, 95
MaeIII GTNAC 1 cut(s) 312
MalI GATC 7 cut(s) 197, 213, 256, 278, 384, 417, 428
MboI GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
MboII GAAGA 3 cut(s) 40, 124, 184
MfeI CAATTG 2 cut(s) 35, 269
MflI RGATCY 2 cut(s) 276, 382
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 3 cut(s) 14, 35, 269
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 4 cut(s) 201, 213, 238, 277
Mph1103I ATGCAT 1 cut(s) 140
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 11
MunI CAATTG 2 cut(s) 35, 269
MwoI GCNNNNNNNGC 2 cut(s) 302, 371
NcoI CCATGG 1 cut(s) 83
NdeII GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
NlaIII CATG 4 cut(s) 79, 87, 382, 391
NlaIV GGNNCC 3 cut(s) 124, 226, 278
NmuCI GTSAC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 1 cut(s) 79
PagI TCATGA 1 cut(s) 387
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspN4I GGNNCC 3 cut(s) 124, 226, 278
PsuI RGATCY 2 cut(s) 276, 382
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 7 cut(s) 195, 211, 254, 276, 382, 415, 426
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 94
SetI ASST 2 cut(s) 165, 414
SfaNI GCATC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 3 cut(s) 14, 35, 269
SsiI CCGC 2 cut(s) 11, 274
SspMI CTAG 2 cut(s) 72, 95
StyI CCWWGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 198
TaqII GACCGA 1 cut(s) 300
TasI AATT 3 cut(s) 14, 35, 269
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 367, 404, 424
TspGWI ACGGA 1 cut(s) 174
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 2 cut(s) 72, 95
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.