FvH4_4g06574
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
5838607 .. 5842562
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06574.t1

Sequence Viewer

Length: 2178 bp
ATGACCAAATTGACACAAAAAGGAGTTCCATTCATATGGTCAGCGGAGTGTGAAGAGGCGTTTCAAGAACTAAAGGTTCGTTTAACCACTGCTCCGGTCTTGATAATTCCTGAACAGGGCATTGGATATACAGTCTACACCGACGCATCATTGCGTGGGTTAGGATGTGTACTGATGCAACGTAAGAAAGTTGTGGCTTATGCTTCTTGTCAATTGAAGTCCCATGAAAAGAATTATCCGACTCATGACTTGGAGTTAGCAGCAGTTGTTCATGCTTTGAAGACTTGGAGACATTATTTGTATGGCGAACGATTCGAGCTCTTTTCCGATCATAAAAGCTTGAAGTATATTTTCACTCAAAAGGAGCTCAATTTGAGACAAAGACGTTGGATGGAGTATCTTGAAGATTATGATTTTGGATTGAATTATCATCCTGGAAAAGCTAATGCAGTAGCGGATGCCTTAAGTCGAAAAGCGGATGGTTGTTCTGCAAGTATGCAACTCCAAAAGTGGAATATGATCAAATCTATTTGTGAGTATCAACTTTATGTCAAGAAGCACGAAGGTGGTGCGCATCTGTACAATATGGCATCACAACCTACCTTGATGGGGAAAATTATTGAGAAGCAACAAGAGGATGAAACCTCCAAAGAATTAATTGAGAAGATAAGAAATGGAGAGAAACTAGAAGGATGGACTTTCCAGGAAAATGGGGGATTAAGATATTGGGGAAGACTATATGTTCCGAAGACTGCTGATATGAGAAATGAAGTTCTTCGTCAGGCACATTATTCATCATATACTATCCATCCAGGCGAGACAAAGTTATACCATGACCTTCGTCGTCAATTTCGGTGGGGTACTATGAAGAAAGACATAGCGACTTTTGTGTCGAAGTGTCTGACGTGTCAACAAGTGAAAGCAGAGCATCGTAAACCCGGAGGAAAACTTCAACCACTTCCAATAGCTGAATGGAAATGGGATCATATAACTATGGACTTTGTGACCGGGTTACCCCGATCACCTAAAGGAAAGGATTCTGTGTGGGTAATTGTGGATCGTTTAACAAAGTCTGCACATTTTCTCCCAGTTAAGACAACAGATTCCACTGAAGCTCTTGGGAAATTATATGTCCAGGAAATAGTAAAGCTTCATGGGATTCCTCTGTCTATTGTGTCCGATAGGGATTCAAAGTTCACTTCTAAATTGTGGGGAAGCCTACAACGTGCTTTGGGAACGGAGTTGAATTTTAGTACTGCATTTCATCCACAAACAGACAGTCAGTCTGAGCGAACTATTCAAATATTGGAAGATATGTTGAGGGCTTGTGTGCTAGATTCTCATGGAAGCTGGGAAGATTATTTGGCATTAACAGAGTTTGCATACAATAATAGTTTTCAGTCCAGTATGAAAATGGCACCATTTGAAGCTCTTTATGGGAGACCTTGTAGATCACCATTATGCTGGACAGAAGTGGGTGAAACTGTATTGCTTGGACCTGACTATATACAAGAAACTACTGAGAAGATTAAGCTTATCAAACAACATCTACTGACTGCCCAGACTCGACAAAGAAATTATGCTGATCGGAGGCGTAGACCCCTAGAGTTTGTGGTCGATGACTTCGTTTTCCTTAAAGTATCACCACGTAAAGGAGTCCAGAGATTTGGGAAGTCAGGGAAGTTAGCTCCACGTTTTGTTGGACCTTTTGAAATTCTGGAACGAATTGGAGAAGGTGCTTACAAGGTAGCATTGCCACCTCAACTTTCAAATATTCACAACGTATTCCATGTTTCAATGTTGCGGAAGTATCATCCAGATCCTACTCATGTTATTGATTGGGGAGAATTCGAAGTGGATGAGCAGTTATCTTTTGAAATAAGGCCACTTCAAGTCTTAGATCGTAAGGAACAAGTTTTGCGTACTAAAACAATTCCTTCGGTCAGAATTCTTTGGCAAAATGGAAATGTTCAAGAGGAGACGTGGGAATTGGAAACTGAAATGCGCAACAAGTATCCAGAACTTTTCTCTACTCCTGTTGAGTTTCCTCATGGGGCATCCAAGACCTACGGTAGCCCACATGTGCACGAAGAGGGGAGTGAAGCCCCATCGACGCCGGAGTCGATAAAACTATCTAATCGGGTTTCGGGTTTGGAGACCATGAGTATAACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

726

Amino Acids

83.61

Weight (kDa)

8.75

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 13 - 106 2.6e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 44 - 137 2.2e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 253 - 308 1.6e-15 Integrase zinc binding domain
rve PF00665 329 - 423 5.9e-07 Integrase core domain
SH3_Tf2-1 PF24626 541 - 605 4.1e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 889, 2119
Acc16I TGCGCA 2 cut(s) 573, 2006
AccB1I GGYRCC 1 cut(s) 1417
AccI GTMKAC 2 cut(s) 135, 1597
AciI CCGC 4 cut(s) 44, 455, 476, 1804
AclWI GGATC 3 cut(s) 990, 1065, 1814
AcsI RAATTY 4 cut(s) 1246, 1713, 1847, 1947
AcuI CTGAAG 1 cut(s) 1131
AcyI GRCGYC 1 cut(s) 2114
AfaI GTAC 5 cut(s) 171, 581, 862, 1255, 1924
AfiI CCNNNNNNNGG 3 cut(s) 116, 609, 1652
AflII CTTAAG 1 cut(s) 463
AflIII ACRYGT 2 cut(s) 905, 2080
AhdI GACNNNNNGTC 1 cut(s) 1282
AjiI CACGTC 2 cut(s) 906, 1983
AjnI CCWGG 4 cut(s) 433, 702, 811, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AleI CACNNNNGTG 1 cut(s) 564
AloI GAACNNNNNNTCC 2 cut(s) 1178, 1210
Alw21I GWGCWC 3 cut(s) 321, 369, 2088
Alw26I GTCTC 6 cut(s) 283, 370, 812, 1435, 1973, 2150
Alw44I GTGCAC 1 cut(s) 2084
AlwI GGATC 3 cut(s) 990, 1065, 1814
AoxI GGCC 1 cut(s) 1883
ApaLI GTGCAC 1 cut(s) 2084
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 4 cut(s) 1246, 1713, 1847, 1947
ArsI GACNNNNNNTTYG 2 cut(s) 1264, 1296
AseI ATTAAT 1 cut(s) 656
Asp700I GAANNNNTTC 2 cut(s) 774, 1036
AspLEI GCGC 2 cut(s) 574, 2007
AspS9I GGNCC 2 cut(s) 1496, 1703
AsuC2I CCSGG 2 cut(s) 939, 1009
AsuHPI GGTGA 4 cut(s) 1014, 1446, 1490, 1635
AsuII TTCGAA 1 cut(s) 1851
AvaII GGWCC 2 cut(s) 1496, 1703
BaeGI GKGCMC 1 cut(s) 2088
BanI GGYRCC 1 cut(s) 1417
BanII GRGCYC 2 cut(s) 321, 369
BbsI GAAGAC 3 cut(s) 287, 739, 755
Bbv12I GWGCWC 3 cut(s) 321, 369, 2088
BbvI GCAGC 1 cut(s) 272
BccI CCATC 6 cut(s) 385, 473, 601, 687, 816, 2116
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BciT130I CCWGG 4 cut(s) 435, 704, 813, 1136
BciVI GTATCC 1 cut(s) 2025
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 2 cut(s) 939, 1009
BcoDI GTCTC 6 cut(s) 283, 370, 812, 1435, 1973, 2150
BfaI CTAG 3 cut(s) 686, 1334, 1604
BfrI CTTAAG 1 cut(s) 463
BfuI GTATCC 1 cut(s) 2025
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 1255
Bme1390I CCNGG 6 cut(s) 435, 704, 813, 939, 1009, 1136
Bme18I GGWCC 2 cut(s) 1496, 1703
BmeRI GACNNNNNGTC 1 cut(s) 1282
BmgBI CACGTC 2 cut(s) 906, 1983
BmgT120I GGNCC 2 cut(s) 1496, 1703
BmiI GGNNCC 1 cut(s) 1419
BmrFI CCNGG 6 cut(s) 435, 704, 813, 939, 1009, 1136
BmrI ACTGGG 1 cut(s) 1082
BmsI GCATC 7 cut(s) 155, 165, 448, 583, 599, 937, 2066
BmuI ACTGGG 1 cut(s) 1082
BoxI GACNNNNGTC 1 cut(s) 840
BpiI GAAGAC 3 cut(s) 287, 739, 755
Bpu14I TTCGAA 1 cut(s) 1851
BpuMI CCSGG 2 cut(s) 939, 1009
BsaAI YACGTR 1 cut(s) 1649
BsaHI GRCGYC 1 cut(s) 2114
BsaI GGTCTC 2 cut(s) 1435, 2150
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 6 cut(s) 76, 106, 1068, 1098, 1432, 1462
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 609, 1652
Bse1I ACTGG 2 cut(s) 1088, 1404
Bse3DI GCAATG 2 cut(s) 149, 1751
BseBI CCWGG 4 cut(s) 435, 704, 813, 1136
BseLI CCNNNNNNNGG 3 cut(s) 116, 609, 1652
BseMI GCAATG 2 cut(s) 149, 1751
BseMII CTCAG 2 cut(s) 1278, 1512
BseNI ACTGG 2 cut(s) 1088, 1404
BseRI GAGGAG 1 cut(s) 1991
BseSI GKGCMC 1 cut(s) 2088
BseXI GCAGC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 1350
BsgI GTGCAG 1 cut(s) 1059
BshFI GGCC 1 cut(s) 1885
BshNI GGYRCC 1 cut(s) 1417
BsiHKAI GWGCWC 3 cut(s) 321, 369, 2088
BsiSI CCGG 4 cut(s) 95, 939, 1008, 2117
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 3 cut(s) 116, 609, 1652
BsmAI GTCTC 6 cut(s) 283, 370, 812, 1435, 1973, 2150
BsmBI CGTCTC 1 cut(s) 1973
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 1885
Bso31I GGTCTC 2 cut(s) 1435, 2150
Bsp119I TTCGAA 1 cut(s) 1851
Bsp1286I GDGCHC 3 cut(s) 321, 369, 2088
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
BspACI CCGC 4 cut(s) 44, 455, 476, 1804
BspANI GGCC 1 cut(s) 1885
BspCNI CTCAG 2 cut(s) 1279, 1513
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 1419
BspPI GGATC 3 cut(s) 990, 1065, 1814
BspT104I TTCGAA 1 cut(s) 1851
BspT107I GGYRCC 1 cut(s) 1417
BspTI CTTAAG 1 cut(s) 463
BspTNI GGTCTC 2 cut(s) 1435, 2150
BsrDI GCAATG 2 cut(s) 149, 1751
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 2 cut(s) 1088, 1404
BssMI GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
BssNI GRCGYC 1 cut(s) 2114
Bst2UI CCWGG 4 cut(s) 435, 704, 813, 1136
Bst4CI ACNGT 4 cut(s) 133, 1280, 1486, 2072
Bst6I CTCTTC 2 cut(s) 48, 2085
BstACI GRCGYC 1 cut(s) 2114
BstAFI CTTAAG 1 cut(s) 463
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 1649
BstBI TTCGAA 1 cut(s) 1851
BstDEI CTNAG 3 cut(s) 1287, 1521, 1897
BstEII GGTNACC 1 cut(s) 1011
BstHHI GCGC 2 cut(s) 574, 2007
BstKTI GATC 9 cut(s) 331, 522, 985, 1022, 1060, 1454, 1588, 1822, 1903
BstMAI GTCTC 6 cut(s) 283, 370, 812, 1435, 1973, 2150
BstMBI GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
BstNI CCWGG 4 cut(s) 435, 704, 813, 1136
BstNSI RCATGY 1 cut(s) 2084
BstPAI GACNNNNGTC 1 cut(s) 840
BstPI GGTNACC 1 cut(s) 1011
BstSCI CCNGG 6 cut(s) 433, 702, 811, 937, 1007, 1134
BstSLI GKGCMC 1 cut(s) 2088
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 3 cut(s) 287, 739, 755
BstX2I RGATCY 1 cut(s) 1819
BstXI CCANNNNNNTGG 4 cut(s) 36, 710, 1464, 1667
BstYI RGATCY 1 cut(s) 1819
BsuI GTATCC 1 cut(s) 2025
BsuRI GGCC 1 cut(s) 1885
BtrI CACGTC 2 cut(s) 906, 1983
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 1107
CciI TCATGA 1 cut(s) 244
CfoI GCGC 2 cut(s) 574, 2007
Cfr13I GGNCC 2 cut(s) 1496, 1703
CseI GACGC 2 cut(s) 152, 2122
Csp6I GTAC 5 cut(s) 170, 580, 861, 1254, 1923
CspCI CAANNNNNGTGG 2 cut(s) 836, 871
CviQI GTAC 5 cut(s) 170, 580, 861, 1254, 1923
DdeI CTNAG 3 cut(s) 1287, 1521, 1897
DpnI GATC 9 cut(s) 330, 521, 984, 1021, 1059, 1453, 1587, 1821, 1902
DpnII GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
DrdI GACNNNNNNGTC 2 cut(s) 889, 2119
DriI GACNNNNNGTC 1 cut(s) 1282
DseDI GACNNNNNNGTC 2 cut(s) 889, 2119
Eam1104I CTCTTC 2 cut(s) 48, 2085
Eam1105I GACNNNNNGTC 1 cut(s) 1282
EarI CTCTTC 2 cut(s) 48, 2085
Ecl136II GAGCTC 2 cut(s) 319, 367
Eco24I GRGCYC 2 cut(s) 321, 369
Eco31I GGTCTC 2 cut(s) 1435, 2150
Eco47I GGWCC 2 cut(s) 1496, 1703
Eco53kI GAGCTC 2 cut(s) 319, 367
Eco57I CTGAAG 1 cut(s) 1131
Eco91I GGTNACC 1 cut(s) 1011
EcoICRI GAGCTC 2 cut(s) 319, 367
EcoO65I GGTNACC 1 cut(s) 1011
EcoRI GAATTC 2 cut(s) 1847, 1947
EcoRII CCWGG 4 cut(s) 433, 702, 811, 1134
EcoT38I GRGCYC 2 cut(s) 321, 369
Esp3I CGTCTC 1 cut(s) 1973
FaqI GGGAC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 35
FbaI TGATCA 1 cut(s) 519
FblI GTMKAC 2 cut(s) 135, 1597
Fnu4HI GCNGC 1 cut(s) 261
FriOI GRGCYC 2 cut(s) 321, 369
Fsp4HI GCNGC 1 cut(s) 261
FspAI RTGCGCAY 1 cut(s) 573
FspBI CTAG 3 cut(s) 686, 1334, 1604
FspI TGCGCA 2 cut(s) 573, 2006
GlaI GCGC 2 cut(s) 573, 2006
GluI GCNGC 1 cut(s) 261
GsaI CCCAGC 1 cut(s) 1354
HaeIII GGCC 1 cut(s) 1885
HapII CCGG 4 cut(s) 95, 939, 1008, 2117
HgaI GACGC 2 cut(s) 152, 2122
HhaI GCGC 2 cut(s) 574, 2007
Hin1I GRCGYC 1 cut(s) 2114
Hin6I GCGC 2 cut(s) 572, 2005
HinP1I GCGC 2 cut(s) 572, 2005
HincII GTYRAC 1 cut(s) 911
HindII GTYRAC 1 cut(s) 911
HindIII AAGCTT 3 cut(s) 337, 1148, 1532
HpaII CCGG 4 cut(s) 95, 939, 1008, 2117
HphI GGTGA 4 cut(s) 1014, 1446, 1490, 1635
Hpy166II GTNNAC 7 cut(s) 136, 170, 911, 935, 1197, 1598, 2086
Hpy188I TCNGA 8 cut(s) 240, 328, 747, 903, 1180, 1288, 1590, 1946
Hpy8I GTNNAC 7 cut(s) 136, 170, 911, 935, 1197, 1598, 2086
Hpy99I CGWCG 3 cut(s) 146, 846, 2116
HpyAV CCTTC 5 cut(s) 557, 683, 848, 1727, 1947
HpyCH4III ACNGT 4 cut(s) 133, 1280, 1486, 2072
HpyCH4IV ACGT 8 cut(s) 181, 385, 905, 1225, 1648, 1693, 1782, 1982
HpyCH4V TGCA 8 cut(s) 178, 449, 491, 499, 1076, 1259, 1382, 2086
HpyF3I CTNAG 3 cut(s) 1287, 1521, 1897
HpySE526I ACGT 8 cut(s) 181, 385, 905, 1225, 1648, 1693, 1782, 1982
Hsp92I GRCGYC 1 cut(s) 2114
HspAI GCGC 2 cut(s) 572, 2005
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
LmnI GCTCC 3 cut(s) 97, 364, 1693
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 7 cut(s) 155, 165, 448, 583, 599, 937, 2066
MaeI CTAG 3 cut(s) 686, 1334, 1604
MaeII ACGT 8 cut(s) 181, 385, 905, 1225, 1648, 1693, 1782, 1982
MaeIII GTNAC 2 cut(s) 1003, 1011
MalI GATC 9 cut(s) 330, 521, 984, 1021, 1059, 1453, 1587, 1821, 1902
MboI GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 1819
MhlI GDGCHC 3 cut(s) 321, 369, 2088
MlyI GAGTC 4 cut(s) 235, 1558, 1665, 2129
MmeI TCCRAC 3 cut(s) 263, 368, 1681
MroXI GAANNNNTTC 2 cut(s) 774, 1036
MseI TTAA 9 cut(s) 83, 464, 656, 719, 1064, 1092, 1370, 1530, 1635
MslI CAYNNNNRTG 3 cut(s) 34, 564, 1459
MspA1I CMGCKG 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 463
MspI CCGG 4 cut(s) 95, 939, 1008, 2117
MspR9I CCNGG 6 cut(s) 435, 704, 813, 939, 1009, 1136
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 4 cut(s) 435, 704, 813, 1136
NciI CCSGG 2 cut(s) 939, 1009
NdeI CATATG 1 cut(s) 35
NdeII GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
NlaIV GGNNCC 1 cut(s) 1419
NmuCI GTSAC 1 cut(s) 1003
NsbI TGCGCA 2 cut(s) 573, 2006
NspI RCATGY 1 cut(s) 2084
NspV TTCGAA 1 cut(s) 1851
OliI CACNNNNGTG 1 cut(s) 564
PagI TCATGA 1 cut(s) 244
PciI ACATGT 1 cut(s) 2080
PcsI WCGNNNNNNNCGW 2 cut(s) 1623, 2120
PdmI GAANNNNTTC 2 cut(s) 774, 1036
PfeI GAWTC 6 cut(s) 312, 1037, 1103, 1159, 1187, 1337
PfoI TCCNGGA 3 cut(s) 433, 702, 1134
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 4 cut(s) 235, 1558, 1664, 2128
PpsI GAGTC 4 cut(s) 235, 1558, 1664, 2128
Ppu21I YACGTR 1 cut(s) 1649
PscI ACATGT 1 cut(s) 2080
PshAI GACNNNNGTC 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 656
Psp124BI GAGCTC 2 cut(s) 321, 369
Psp6I CCWGG 4 cut(s) 433, 702, 811, 1134
PspEI GGTNACC 1 cut(s) 1011
PspFI CCCAGC 1 cut(s) 1350
PspGI CCWGG 4 cut(s) 433, 702, 811, 1134
PspN4I GGNNCC 1 cut(s) 1419
PspPI GGNCC 2 cut(s) 1496, 1703
PsuI RGATCY 1 cut(s) 1819
RsaI GTAC 5 cut(s) 171, 581, 862, 1255, 1924
RsaNI GTAC 5 cut(s) 170, 580, 861, 1254, 1923
RseI CAYNNNNRTG 3 cut(s) 34, 564, 1459
SacI GAGCTC 2 cut(s) 321, 369
SaqAI TTAA 9 cut(s) 83, 464, 656, 719, 1064, 1092, 1370, 1530, 1635
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 9 cut(s) 328, 519, 982, 1019, 1057, 1451, 1585, 1819, 1900
Sau96I GGNCC 2 cut(s) 1496, 1703
ScaI AGTACT 1 cut(s) 1255
SchI GAGTC 4 cut(s) 235, 1558, 1665, 2129
ScrFI CCNGG 6 cut(s) 435, 704, 813, 939, 1009, 1136
SduI GDGCHC 3 cut(s) 321, 369, 2088
SfaNI GCATC 7 cut(s) 155, 165, 448, 583, 599, 937, 2066
SfuI TTCGAA 1 cut(s) 1851
SinI GGWCC 2 cut(s) 1496, 1703
SmiMI CAYNNNNRTG 3 cut(s) 34, 564, 1459
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
SsiI CCGC 4 cut(s) 44, 455, 476, 1804
SspI AATATT 2 cut(s) 1305, 1774
SspMI CTAG 3 cut(s) 686, 1334, 1604
SstI GAGCTC 2 cut(s) 321, 369
StyD4I CCNGG 6 cut(s) 433, 702, 811, 937, 1007, 1134
TaaI ACNGT 4 cut(s) 133, 1280, 1486, 2072
TaiI ACGT 8 cut(s) 184, 388, 908, 1228, 1651, 1696, 1785, 1985
TaqI TCGA 8 cut(s) 315, 469, 893, 1567, 1617, 1851, 2111, 2123
TaqII GACCGA 1 cut(s) 1930
TatI WGTACW 3 cut(s) 169, 579, 1253
TfiI GAWTC 6 cut(s) 312, 1037, 1103, 1159, 1187, 1337
Tru1I TTAA 9 cut(s) 83, 464, 656, 719, 1064, 1092, 1370, 1530, 1635
Tru9I TTAA 9 cut(s) 83, 464, 656, 719, 1064, 1092, 1370, 1530, 1635
TscAI CASTG 2 cut(s) 94, 1114
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 1003
TspGWI ACGGA 1 cut(s) 1253
TspRI CASTG 2 cut(s) 94, 1114
Vha464I CTTAAG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 2084
VpaK11BI GGWCC 2 cut(s) 1496, 1703
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 4 cut(s) 1246, 1713, 1847, 1947
XceI RCATGY 1 cut(s) 2084
XcmI CCANNNNNNNNNTGG 2 cut(s) 969, 1411
XmiI GTMKAC 2 cut(s) 135, 1597
XmnI GAANNNNTTC 2 cut(s) 774, 1036
XspI CTAG 3 cut(s) 686, 1334, 1604
ZrmI AGTACT 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.