Rmu_sc0010661.1_g000006

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010661.1
OG0000094
Physical Location & Seq
Reverse (-)
17033 .. 18420
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010661.1_g000006.1.cds

Sequence Viewer

Length: 1290 bp
atggtcaaacttaagggtgcgggggcgaagcctcgtctcctccgtacatctccggcgacaattgccgcttccttggctggtttcaaatctgcgctcatagagaagatcacccatctccagctcactcaacagggtagcgctgctatcccacttcctgatggctccgtccgatttggatcagtctcttccccggtgctccaatcattaattcctcctcagtcagaggccacatcttcaaccctagctcgatcagagggccttccgttcccgcttgataatatcgctcagatccctaatttttcacttggtactgttgatgtgttgctcaggtttattggtgattctatgactagcactgtgggaatacttcctgatgcaccggttagccagcccttggctcaatctatttccactctcggcatgctagtttctagctctaagcctgtctctgtggggagtactacgtctgttagtgggaatgggagtttggggccttatgtgcagatgggtggtgggggtaacccccagtcacagcagttccagcactcattcataggctcacaacccttaggagcttccttaggacccttgcacaataatagcattagtatgcaccaaactatgccaccccctgtctctggattcaatccacctatgtgggaacctgatccattcaccatgacctattttggcccttataatgtcaccatgcattcgtttcctcataccataatcacacctactttaccatttgcagttccatacttcactcaaagtaaaggctcaactccatatcacatgatcactcctacttatgctactacgactacaacccacagtttctcccatagcaatcaattcctaatcacttcaccaccctcatccattccacaaatgagtgctccgaattgttatgctcatctgggttcgtttatgctcgaacaccataactacatggcttacattgatcctactttacctaccaagaatcaaatgaggctggaattcagtgtttttgggggaggtgatcatgttgagtggctcaacaaggccgagcagtattttgaattcttccagattctggaagagaggaaattatcaattgtaactatgcatttaactgataaagcctcagaccattggtatatgtttcggcatgaatttcctcatgcatggcaaggactagctgacctactcatgcgagaattcagtagctataacaggtcggaataccaggctgcccaggccagaatgtctcagaccggaagcgtggaacactacaaggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

429

Amino Acids

46.86

Weight (kDa)

6.51

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccB7I CCANNNNNTGG 2 cut(s) 394, 1081
AciI CCGC 3 cut(s) 20, 66, 269
AclWI GGATC 4 cut(s) 184, 283, 662, 962
AcsI RAATTY 4 cut(s) 1004, 1067, 1160, 1205
AfaI GTAC 3 cut(s) 46, 310, 460
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 3 cut(s) 394, 638, 1081
AflII CTTAAG 1 cut(s) 11
AgeI ACCGGT 1 cut(s) 379
AgsI TTSAA 4 cut(s) 85, 237, 646, 1067
AjnI CCWGG 2 cut(s) 1233, 1242
AjuI GAANNNNNNNTTGG 4 cut(s) 192, 224, 470, 502
AleI CACNNNNGTG 1 cut(s) 655
AluBI AGCT 6 cut(s) 121, 245, 435, 575, 1187, 1215
AluI AGCT 6 cut(s) 121, 245, 435, 575, 1187, 1215
Alw21I GWGCWC 2 cut(s) 198, 904
Alw26I GTCTC 5 cut(s) 41, 187, 451, 640, 1260
AlwI GGATC 4 cut(s) 184, 283, 662, 962
AlwNI CAGNNNCTG 1 cut(s) 1081
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 6 cut(s) 225, 256, 491, 691, 1050, 1245
ApeKI GCWGC 2 cut(s) 140, 1238
ApoI RAATTY 4 cut(s) 1004, 1067, 1160, 1205
AseI ATTAAT 1 cut(s) 206
AsiGI ACCGGT 1 cut(s) 379
AspLEI GCGC 2 cut(s) 94, 140
AspS9I GGNCC 4 cut(s) 256, 491, 584, 692
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 6 cut(s) 100, 350, 667, 697, 864, 1037
AvaII GGWCC 1 cut(s) 584
AxyI CCTNAGG 2 cut(s) 568, 580
Bbv12I GWGCWC 2 cut(s) 198, 904
BbvI GCAGC 2 cut(s) 127, 1225
BccI CCATC 3 cut(s) 120, 152, 499
BciT130I CCWGG 2 cut(s) 1235, 1244
BclI TGATCA 2 cut(s) 801, 1027
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 5 cut(s) 41, 187, 451, 640, 1260
BfaI CTAG 5 cut(s) 242, 351, 425, 432, 1184
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 66, 141, 1239
BlsI GCNGC 3 cut(s) 67, 142, 1240
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 191, 1235, 1244
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 4 cut(s) 256, 491, 584, 692
BmiI GGNNCC 4 cut(s) 163, 492, 586, 663
BmrFI CCNGG 3 cut(s) 191, 1235, 1244
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 520
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 175
BsaJI CCNNGG 4 cut(s) 72, 189, 393, 1242
BsaWI WCCGGW 2 cut(s) 379, 1262
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 638, 1081
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 526
Bse21I CCTNAGG 2 cut(s) 568, 580
Bse8I GATNNNNATC 1 cut(s) 175
BseBI CCWGG 2 cut(s) 1235, 1244
BseDI CCNNGG 4 cut(s) 72, 189, 393, 1242
BseGI GGATG 1 cut(s) 881
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 394, 638, 1081
BseMII CTCAG 5 cut(s) 230, 299, 340, 1146, 1271
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 29, 204
BseXI GCAGC 2 cut(s) 127, 1225
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 6 cut(s) 227, 258, 493, 693, 1052, 1247
BshTI ACCGGT 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 198, 904
BsiSI CCGG 4 cut(s) 53, 191, 380, 1263
BslI CCNNNNNNNGG 3 cut(s) 394, 638, 1081
BsmAI GTCTC 5 cut(s) 41, 187, 451, 640, 1260
BsmBI CGTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 6 cut(s) 227, 258, 493, 693, 1052, 1247
Bsp1286I GDGCHC 2 cut(s) 198, 904
Bsp143I GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
BspACI CCGC 3 cut(s) 20, 66, 269
BspANI GGCC 6 cut(s) 227, 258, 493, 693, 1052, 1247
BspCNI CTCAG 5 cut(s) 229, 298, 339, 1145, 1270
BspLI GGNNCC 4 cut(s) 163, 492, 586, 663
BspPI GGATC 4 cut(s) 184, 283, 662, 962
BspTI CTTAAG 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 4 cut(s) 72, 189, 393, 1242
BssMI GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
BssT1I CCWWGG 2 cut(s) 72, 393
Bst2UI CCWGG 2 cut(s) 1235, 1244
Bst4CI ACNGT 3 cut(s) 313, 358, 839
Bst6I CTCTTC 2 cut(s) 190, 1080
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 389, 422
BstDEI CTNAG 8 cut(s) 216, 285, 326, 438, 568, 580, 1132, 1257
BstEII GGTNACC 1 cut(s) 518
BstF5I GGATG 1 cut(s) 881
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 94, 140
BstKTI GATC 8 cut(s) 108, 179, 251, 291, 670, 804, 970, 1030
BstMAI GTCTC 5 cut(s) 41, 187, 451, 640, 1260
BstMBI GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
BstMWI GCNNNNNNNGC 5 cut(s) 62, 74, 499, 541, 1244
BstNI CCWGG 2 cut(s) 1235, 1244
BstNSI RCATGY 1 cut(s) 424
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 189, 1233, 1242
BstV1I GCAGC 2 cut(s) 127, 1225
BstX2I RGATCY 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 657
BstYI RGATCY 1 cut(s) 288
Bsu36I CCTNAGG 2 cut(s) 568, 580
BsuRI GGCC 6 cut(s) 227, 258, 493, 693, 1052, 1247
BtsCI GGATG 1 cut(s) 881
BtsIMutI CAGTG 2 cut(s) 354, 1015
Cac8I GCNNGC 2 cut(s) 389, 422
CaiI CAGNNNCTG 1 cut(s) 1081
CfoI GCGC 2 cut(s) 94, 140
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 4 cut(s) 256, 491, 584, 692
Csp6I GTAC 3 cut(s) 45, 309, 459
CspAI ACCGGT 1 cut(s) 379
CviQI GTAC 3 cut(s) 45, 309, 459
DdeI CTNAG 8 cut(s) 216, 285, 326, 438, 568, 580, 1132, 1257
DpnI GATC 8 cut(s) 107, 178, 250, 290, 669, 803, 969, 1029
DpnII GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
Eam1104I CTCTTC 2 cut(s) 190, 1080
EarI CTCTTC 2 cut(s) 190, 1080
Eco130I CCWWGG 2 cut(s) 72, 393
Eco47I GGWCC 1 cut(s) 584
Eco47III AGCGCT 1 cut(s) 139
Eco81I CCTNAGG 2 cut(s) 568, 580
Eco91I GGTNACC 1 cut(s) 518
EcoO109I RGGNCCY 3 cut(s) 256, 491, 584
EcoO65I GGTNACC 1 cut(s) 518
EcoRI GAATTC 3 cut(s) 1004, 1067, 1205
EcoRII CCWGG 2 cut(s) 1233, 1242
EcoT14I CCWWGG 2 cut(s) 72, 393
EcoT22I ATGCAT 3 cut(s) 714, 1116, 1174
ErhI CCWWGG 2 cut(s) 72, 393
Esp3I CGTCTC 1 cut(s) 41
FauI CCCGC 2 cut(s) 13, 276
FbaI TGATCA 2 cut(s) 801, 1027
Fnu4HI GCNGC 3 cut(s) 66, 141, 1239
FokI GGATG 1 cut(s) 868
Fsp4HI GCNGC 3 cut(s) 66, 141, 1239
FspBI CTAG 5 cut(s) 242, 351, 425, 432, 1184
GlaI GCGC 2 cut(s) 93, 139
GluI GCNGC 3 cut(s) 66, 141, 1239
GsuI CTGGAG 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 6 cut(s) 227, 258, 493, 693, 1052, 1247
HapII CCGG 4 cut(s) 53, 191, 380, 1263
HhaI GCGC 2 cut(s) 94, 140
Hin6I GCGC 2 cut(s) 92, 138
HinP1I GCGC 2 cut(s) 92, 138
HinfI GANTC 4 cut(s) 341, 642, 988, 1078
HpaII CCGG 4 cut(s) 53, 191, 380, 1263
HphI GGTGA 6 cut(s) 100, 350, 667, 697, 864, 1037
Hpy188I TCNGA 8 cut(s) 170, 223, 253, 288, 906, 1135, 1228, 1260
Hpy188III TCNNGA 5 cut(s) 155, 371, 639, 1075, 1082
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 313, 358, 839
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 8 cut(s) 377, 502, 592, 613, 712, 755, 1114, 1172
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 74, 499, 541, 1244
HpyF3I CTNAG 8 cut(s) 216, 285, 326, 438, 568, 580, 1132, 1257
HpySE526I ACGT 1 cut(s) 464
HspAI GCGC 2 cut(s) 92, 138
Ksp22I TGATCA 2 cut(s) 801, 1027
Kzo9I GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
LmnI GCTCC 4 cut(s) 167, 201, 572, 907
Lsp1109I GCAGC 2 cut(s) 127, 1225
LweI GCATC 1 cut(s) 364
MaeI CTAG 5 cut(s) 242, 351, 425, 432, 1184
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 4 cut(s) 518, 528, 703, 1105
MalI GATC 8 cut(s) 107, 178, 250, 290, 669, 803, 969, 1029
MboI GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
MboII GAAGA 5 cut(s) 115, 177, 225, 1063, 1097
MfeI CAATTG 2 cut(s) 60, 1101
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 2 cut(s) 198, 904
MmeI TCCRAC 1 cut(s) 1206
Mph1103I ATGCAT 3 cut(s) 714, 1116, 1174
MseI TTAA 3 cut(s) 12, 206, 1118
MslI CAYNNNNRTG 2 cut(s) 608, 655
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 4 cut(s) 53, 191, 380, 1263
MspR9I CCNGG 3 cut(s) 191, 1235, 1244
MunI CAATTG 2 cut(s) 60, 1101
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 2 cut(s) 1235, 1244
MwoI GCNNNNNNNGC 5 cut(s) 62, 74, 499, 541, 1244
NciI CCSGG 1 cut(s) 191
NdeII GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
NlaIV GGNNCC 4 cut(s) 163, 492, 586, 663
NmeAIII GCCGAG 2 cut(s) 396, 1078
NmuCI GTSAC 2 cut(s) 528, 703
NsiI ATGCAT 3 cut(s) 714, 1116, 1174
NspI RCATGY 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 655
PaeI GCATGC 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 4 cut(s) 341, 642, 988, 1078
PflMI CCANNNNNTGG 2 cut(s) 394, 1081
PinAI ACCGGT 1 cut(s) 379
PkrI GCNGC 3 cut(s) 67, 142, 1240
PpuMI RGGWCCY 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 206
PsiI TTATAA 1 cut(s) 699
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 2 cut(s) 1233, 1242
PspEI GGTNACC 1 cut(s) 518
PspGI CCWGG 2 cut(s) 1233, 1242
PspN4I GGNNCC 4 cut(s) 163, 492, 586, 663
PspPI GGNCC 4 cut(s) 256, 491, 584, 692
PspPPI RGGWCCY 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 1081
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 3 cut(s) 46, 310, 460
RsaNI GTAC 3 cut(s) 45, 309, 459
RseI CAYNNNNRTG 2 cut(s) 608, 655
SaqAI TTAA 3 cut(s) 12, 206, 1118
SatI GCNGC 3 cut(s) 66, 141, 1239
Sau3AI GATC 8 cut(s) 105, 176, 248, 288, 667, 801, 967, 1027
Sau96I GGNCC 4 cut(s) 256, 491, 584, 692
ScaI AGTACT 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 191, 1235, 1244
SduI GDGCHC 2 cut(s) 198, 904
SfaNI GCATC 1 cut(s) 364
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 2 cut(s) 608, 655
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 1 cut(s) 424
SsiI CCGC 3 cut(s) 20, 66, 269
SspMI CTAG 5 cut(s) 242, 351, 425, 432, 1184
StyD4I CCNGG 3 cut(s) 189, 1233, 1242
StyI CCWWGG 2 cut(s) 72, 393
TaaI ACNGT 3 cut(s) 313, 358, 839
TaiI ACGT 1 cut(s) 467
TaqI TCGA 2 cut(s) 247, 939
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 4 cut(s) 341, 642, 988, 1078
Tru1I TTAA 3 cut(s) 12, 206, 1118
Tru9I TTAA 3 cut(s) 12, 206, 1118
TscAI CASTG 2 cut(s) 361, 1015
TseFI GTSAC 2 cut(s) 528, 703
TseI GCWGC 2 cut(s) 140, 1238
Tsp45I GTSAC 2 cut(s) 528, 703
TspDTI ATGAA 2 cut(s) 541, 1173
TspGWI ACGGA 3 cut(s) 32, 154, 252
TspRI CASTG 2 cut(s) 361, 1015
Van91I CCANNNNNTGG 2 cut(s) 394, 1081
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 584
VspI ATTAAT 1 cut(s) 206
XapI RAATTY 4 cut(s) 1004, 1067, 1160, 1205
XceI RCATGY 1 cut(s) 424
XspI CTAG 5 cut(s) 242, 351, 425, 432, 1184
ZrmI AGTACT 1 cut(s) 460
Zsp2I ATGCAT 3 cut(s) 714, 1116, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.