RchiOBHm_Chr2g0084311

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000094
Physical Location & Seq
Forward (+)
148159 .. 151070
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45991

Sequence Viewer

Length: 1992 bp
ATGAGCCGATACCTAGGGGGTTTGCTGATTCTTTTGGACAGTTCTTTCGGCAGATTGCCGCAGCACTCCCCGGGTCACGTACTGACTATACTGTGGAGCGTGCTAAGAGGCACGGGGCTCAGACTTTTGCTTCTGCCGCCTCACCTGTTGAGGCTCAGCGGTGGATTGACAGGATGGAGAGAGTTTTCTCCCAAATGGATCTTCCAGAGGATAGGAAAGTGGATTTGGCAGTACAGTTTCTTGAGGATACCGCCTGGCATTGGTGGATTGATGTTACGAATGACCCTGCAAATCTTAGTGAAGAGAGATGATCAGTCAGTGTTGGAGTTTGAGCAGGAGTTTCTCTCCTTAGCCCACCATGTGCCGGATTTGGTTCGCACCGAGCAAAGCAAGATTCGTAGATTTGTTTTGGGACTTGGAGGCAAGTTTAAGGACAAGATGTTAGGCACACCGTATCGGAGCTTTGCTGAGGCAGTATCTTATGCCATGGACATTGAGTCAGACTCACCTGCTGGATTTCACCCTAGGGATCCTGGTGGCCCTAGCCAGGGTCCATCTAAGAGGGCTACTTCCACATCTGGTTCTGGTTCTTCAGTTGGTAGTGGAAAGAGCAGTGGTTCCAGTTCGAGAACCCGTACTAGATTCAGGGCACGTGACAGGAGATTCTCTCGGGGTCAGTCTAGTGGACGACAGTTTGGACAGTTTGAGAGGTCCAGGAGTTATCATGGTGGTTCGAGTGGGGCTTCTGCTAGCCAGCCAGCCCAGTATGGGCAGTATCAGACAGCTGGATGTTTTATTTGTGGTCAGCAGGATCACTTCAGGAGGGACTGTCCCCTTGCGACTCAGGGAGCTAGATCTACCCCCACTCAGACTGTTGGTCAGTCCTCTGCTGGTGGTTCTACTAGCAGCGCCCGCACTAGCTCGGTAGGCCGAGCTAGTTCTCAGCAGGGCAGGGCTCAGCGAGGTCGTCCTGTGACACATGCTAGACTGCACGCCATGACCCAGCAGGAGGGCCGTGATTCACCCAAAGTTATCGTTGGTACGTTATTTATCTTTCATCAACCTGCTTTAACCTTAATTGATCCTGGTGCGACGCACTCTTTTATGTCCAGTAGATTCACATGTTTTGCAAATGTGCCATCATCACTCCTTATTGGTGAGTGGTATGTCTCTTTACCTGCGGGAAGGGCACTTAAGATAGAGTGGGTTTTTAATGGTTGTGGTGTAATGGTTGACGGTTTTTGCCTAGAGGCCAACCTAATTCCTCTAGACCTTGTGGAGTTTGATGTAATTCTGGGGATGGACTTTTTGGGGACACATGGTGCATTGGTTGATTGTTTCCGTAAAGAAGTAGTGTTTCGAAGTCCAGGAAAACCGGAAATCACCTTCCGTGGTGAGAGAAACATTCTCTCCTCTTGCCTGATTTCGGCCATTACGGCTGAAAAGCTTATGAATAAAGGTTGTCAGGCTTATTTAGCACACATTGTGGATACAAAGAGGGCGGTGTTGAACATTGAGGATATTCCTGTGGTCAGGAAGTTTCCGGATGTGTTTCCTGATGAACTACCTGGTTTACCTCCAGAAAGGGAAATAGATTTTACCATTGAGTTGCTCCCTGGTACTGCACCTATATATCAGGCACCTTATAGAATGGCCCCAGCTGAGTTAAAGGAGTTGAAGACCCAGTTACAGGAGTTGTTGGATAAAGGTTTCATTCGGCCAAGTGTGTCCCCTTGGGGTGCGCCGGTGCTTTTTGTTAAGAAGAAGGATGGCACTTTGAGGTTGTGTATTGATTATAGAAAATTGAATAAGGTCACAGTGAAGAACAAGTATCCATTACCACGGATTGATGATTTATTTGACCAATTGCGGGGTGCCAAAGTCTTTTCTAAGATTGATTTGAGGACAGGTTATCACCAGCTACGGATAAGAGAGTCCGATGTACCCAAGACCGCATTCCGATCACGTTATGGTCACTACGAATTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

663

Amino Acids

73.61

Weight (kDa)

9.84

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 325 - 454 1.8e-27 Retroviral aspartyl protease
RVT_1 PF00078 586 - 655 8.2e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 3 cut(s) 517, 1072, 1186
AccB1I GGYRCC 2 cut(s) 1639, 1874
AccIII TCCGGA 1 cut(s) 1543
AciI CCGC 9 cut(s) 59, 137, 159, 251, 913, 1181, 1502, 1870, 1953
AclWI GGATC 5 cut(s) 206, 524, 537, 819, 1076
AcoI YGGCCR 2 cut(s) 1428, 1718
AcsI RAATTY 1 cut(s) 1982
AcuI CTGAAG 2 cut(s) 576, 802
AcvI CACGTG 1 cut(s) 653
AdeI CACNNNGTG 3 cut(s) 361, 1322, 1486
AfaI GTAC 6 cut(s) 81, 233, 637, 1042, 1621, 1944
AfiI CCNNNNNNNGG 9 cut(s) 260, 364, 547, 548, 768, 1009, 1426, 1690, 1870
AflII CTTAAG 1 cut(s) 1193
AflIII ACRYGT 1 cut(s) 1121
AgsI TTSAA 3 cut(s) 1510, 1678, 1807
AhdI GACNNNNNGTC 2 cut(s) 496, 876
AjnI CCWGG 8 cut(s) 253, 532, 546, 713, 1084, 1366, 1567, 1615
AjuI GAANNNNNNNTTGG 6 cut(s) 185, 208, 217, 240, 1940, 1972
AluBI AGCT 8 cut(s) 462, 785, 851, 921, 935, 1447, 1661, 1921
AluI AGCT 8 cut(s) 462, 785, 851, 921, 935, 1447, 1661, 1921
Alw26I GTCTC 1 cut(s) 1174
AlwI GGATC 5 cut(s) 206, 524, 537, 819, 1076
Ama87I CYCGRG 2 cut(s) 70, 669
Aor13HI TCCGGA 1 cut(s) 1543
AoxI GGCC 7 cut(s) 538, 928, 1012, 1251, 1428, 1653, 1718
ApeKI GCWGC 2 cut(s) 61, 906
ApoI RAATTY 1 cut(s) 1982
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspA2I CCTAGG 2 cut(s) 13, 524
AspLEI GCGC 2 cut(s) 911, 1744
AspS9I GGNCC 5 cut(s) 539, 551, 711, 1012, 1654
AsuC2I CCSGG 2 cut(s) 71, 72
AsuHPI GGTGA 8 cut(s) 134, 498, 512, 1014, 1169, 1375, 1406, 1907
AsuII TTCGAA 1 cut(s) 1360
AsuNHI GCTAGC 1 cut(s) 749
AvaI CYCGRG 2 cut(s) 70, 669
AvaII GGWCC 2 cut(s) 551, 711
AvrII CCTAGG 2 cut(s) 13, 524
BaeGI GKGCMC 2 cut(s) 652, 1192
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 1639, 1874
BanII GRGCYC 2 cut(s) 120, 958
BbrPI CACGTG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 1685
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 73, 918
BccI CCATC 5 cut(s) 168, 562, 1147, 1294, 1763
BceAI ACGGC 2 cut(s) 999, 1452
BciT130I CCWGG 8 cut(s) 255, 534, 548, 715, 1086, 1368, 1569, 1617
BciVI GTATCC 3 cut(s) 240, 1483, 1842
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 2 cut(s) 71, 72
BcoDI GTCTC 1 cut(s) 1174
BfoI RGCGCY 1 cut(s) 912
BfrI CTTAAG 1 cut(s) 1193
BfuAI ACCTGC 3 cut(s) 517, 1072, 1186
BfuI GTATCC 3 cut(s) 240, 1483, 1842
BglI GCCNNNNNGGC 1 cut(s) 1436
BglII AGATCT 1 cut(s) 854
BisI GCNGC 4 cut(s) 59, 62, 137, 907
BlnI CCTAGG 2 cut(s) 13, 524
BlpI GCTNAGC 2 cut(s) 155, 957
BlsI GCNGC 4 cut(s) 60, 63, 138, 908
Bme18I GGWCC 2 cut(s) 551, 711
BmeRI GACNNNNNGTC 2 cut(s) 496, 876
BmeT110I CYCGRG 2 cut(s) 70, 669
BmgT120I GGNCC 5 cut(s) 539, 551, 711, 1012, 1654
BmiI GGNNCC 6 cut(s) 531, 552, 619, 1641, 1656, 1876
BmrI ACTGGG 2 cut(s) 757, 1678
BmtI GCTAGC 1 cut(s) 753
BmuI ACTGGG 2 cut(s) 757, 1678
BpiI GAAGAC 1 cut(s) 1685
BplI GAGNNNNNCTC 6 cut(s) 329, 361, 488, 520, 652, 684
BpmI CTGGAG 1 cut(s) 1563
Bpu10I CCTNAGC 2 cut(s) 349, 468
Bpu1102I GCTNAGC 2 cut(s) 155, 957
Bpu14I TTCGAA 1 cut(s) 1360
BpuEI CTTGAG 1 cut(s) 262
BpuMI CCSGG 2 cut(s) 71, 72
BsaAI YACGTR 2 cut(s) 79, 653
BsaWI WCCGGW 2 cut(s) 1375, 1543
BsaXI ACNNNNNCTCC 4 cut(s) 814, 844, 1394, 1424
Bsc4I CCNNNNNNNGG 9 cut(s) 260, 364, 547, 548, 768, 1009, 1426, 1690, 1870
Bse118I RCCGGY 1 cut(s) 1744
Bse1I ACTGG 4 cut(s) 621, 763, 1110, 1684
BseAI TCCGGA 1 cut(s) 1543
BseBI CCWGG 8 cut(s) 255, 534, 548, 715, 1086, 1368, 1569, 1617
BseGI GGATG 5 cut(s) 179, 794, 1305, 1552, 1774
BseLI CCNNNNNNNGG 9 cut(s) 260, 364, 547, 548, 768, 1009, 1426, 1690, 1870
BseMII CTCAG 8 cut(s) 133, 169, 459, 857, 881, 956, 971, 1653
BseNI ACTGG 4 cut(s) 621, 763, 1110, 1684
BseRI GAGGAG 1 cut(s) 1402
BseSI GKGCMC 2 cut(s) 652, 1192
BseXI GCAGC 2 cut(s) 73, 918
BseYI CCCAGC 2 cut(s) 1002, 1657
BsgI GTGCAG 2 cut(s) 974, 1608
BshFI GGCC 7 cut(s) 540, 930, 1014, 1253, 1430, 1655, 1720
BshNI GGYRCC 2 cut(s) 1639, 1874
BsiHKCI CYCGRG 2 cut(s) 70, 669
BsiSI CCGG 5 cut(s) 71, 365, 1376, 1544, 1745
BslFI GGGAC 5 cut(s) 426, 816, 839, 1327, 1714
BslI CCNNNNNNNGG 9 cut(s) 260, 364, 547, 548, 768, 1009, 1426, 1690, 1870
BsmAI GTCTC 1 cut(s) 1174
BsmFI GGGAC 5 cut(s) 426, 816, 839, 1327, 1714
BsmI GAATGC 1 cut(s) 1955
BsnI GGCC 7 cut(s) 540, 930, 1014, 1253, 1430, 1655, 1720
BsoBI CYCGRG 2 cut(s) 70, 669
Bsp119I TTCGAA 1 cut(s) 1360
Bsp1286I GDGCHC 4 cut(s) 120, 652, 958, 1192
Bsp13I TCCGGA 1 cut(s) 1543
Bsp143I GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
Bsp1720I GCTNAGC 2 cut(s) 155, 957
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 9 cut(s) 59, 137, 159, 251, 913, 1181, 1502, 1870, 1953
BspANI GGCC 7 cut(s) 540, 930, 1014, 1253, 1430, 1655, 1720
BspCNI CTCAG 8 cut(s) 132, 168, 460, 856, 880, 955, 970, 1654
BspEI TCCGGA 1 cut(s) 1543
BspLI GGNNCC 6 cut(s) 531, 552, 619, 1641, 1656, 1876
BspMI ACCTGC 3 cut(s) 517, 1072, 1186
BspOI GCTAGC 1 cut(s) 753
BspPI GGATC 5 cut(s) 206, 524, 537, 819, 1076
BspT104I TTCGAA 1 cut(s) 1360
BspT107I GGYRCC 2 cut(s) 1639, 1874
BspTI CTTAAG 1 cut(s) 1193
BsrFI RCCGGY 1 cut(s) 1744
BsrI ACTGG 4 cut(s) 621, 763, 1110, 1684
BssAI RCCGGY 1 cut(s) 1744
BssMI GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
BssT1I CCWWGG 4 cut(s) 13, 486, 524, 1733
Bst2UI CCWGG 8 cut(s) 255, 534, 548, 715, 1086, 1368, 1569, 1617
Bst6I CTCTTC 1 cut(s) 296
BstAFI CTTAAG 1 cut(s) 1193
BstBAI YACGTR 2 cut(s) 79, 653
BstBI TTCGAA 1 cut(s) 1360
BstC8I GCNNGC 6 cut(s) 101, 751, 755, 759, 913, 993
BstDSI CCRYGG 3 cut(s) 486, 1390, 1841
BstF5I GGATG 5 cut(s) 179, 794, 1305, 1552, 1774
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 2 cut(s) 911, 1744
BstKTI GATC 7 cut(s) 201, 313, 532, 814, 857, 1084, 1964
BstMAI GTCTC 1 cut(s) 1174
BstMBI GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
BstMWI GCNNNNNNNGC 6 cut(s) 136, 912, 927, 1187, 1436, 1475
BstNI CCWGG 8 cut(s) 255, 534, 548, 715, 1086, 1368, 1569, 1617
BstNSI RCATGY 2 cut(s) 983, 1125
BstSLI GKGCMC 2 cut(s) 652, 1192
BstV1I GCAGC 2 cut(s) 73, 918
BstV2I GAAGAC 1 cut(s) 1685
BstX2I RGATCY 3 cut(s) 198, 529, 854
BstYI RGATCY 3 cut(s) 198, 529, 854
BsuI GTATCC 3 cut(s) 240, 1483, 1842
BsuRI GGCC 7 cut(s) 540, 930, 1014, 1253, 1430, 1655, 1720
BtgI CCRYGG 3 cut(s) 486, 1390, 1841
BtsCI GGATG 5 cut(s) 179, 794, 1305, 1552, 1774
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 3 cut(s) 324, 619, 1824
BveI ACCTGC 3 cut(s) 517, 1072, 1186
Cac8I GCNNGC 6 cut(s) 101, 751, 755, 759, 913, 993
CfoI GCGC 2 cut(s) 911, 1744
Cfr10I RCCGGY 1 cut(s) 1744
Cfr13I GGNCC 5 cut(s) 539, 551, 711, 1012, 1654
Cfr9I CCCGGG 1 cut(s) 70
CseI GACGC 1 cut(s) 1102
CsiI ACCWGGT 1 cut(s) 1567
Csp6I GTAC 6 cut(s) 80, 232, 636, 1041, 1620, 1943
CviAII CATG 7 cut(s) 359, 487, 725, 980, 997, 1122, 1319
CviQI GTAC 6 cut(s) 80, 232, 636, 1041, 1620, 1943
DpnI GATC 7 cut(s) 200, 312, 531, 813, 856, 1083, 1963
DpnII GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
DraIII CACNNNGTG 3 cut(s) 361, 1322, 1486
DriI GACNNNNNGTC 2 cut(s) 496, 876
EaeI YGGCCR 2 cut(s) 1428, 1718
Eam1104I CTCTTC 1 cut(s) 296
Eam1105I GACNNNNNGTC 2 cut(s) 496, 876
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 4 cut(s) 13, 486, 524, 1733
Eco24I GRGCYC 2 cut(s) 120, 958
Eco47I GGWCC 2 cut(s) 551, 711
Eco57I CTGAAG 2 cut(s) 576, 802
Eco72I CACGTG 1 cut(s) 653
Eco88I CYCGRG 2 cut(s) 70, 669
EcoRII CCWGG 8 cut(s) 253, 532, 546, 713, 1084, 1366, 1567, 1615
EcoT14I CCWWGG 4 cut(s) 13, 486, 524, 1733
EcoT38I GRGCYC 2 cut(s) 120, 958
ErhI CCWWGG 4 cut(s) 13, 486, 524, 1733
FaeI CATG 7 cut(s) 362, 490, 728, 983, 1000, 1125, 1322
FaqI GGGAC 5 cut(s) 426, 816, 839, 1327, 1714
FatI CATG 7 cut(s) 358, 486, 724, 979, 996, 1121, 1318
FauI CCCGC 3 cut(s) 920, 1174, 1863
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 59, 62, 137, 907
FokI GGATG 5 cut(s) 186, 801, 1312, 1559, 1781
FriOI GRGCYC 2 cut(s) 120, 958
Fsp4HI GCNGC 4 cut(s) 59, 62, 137, 907
GlaI GCGC 2 cut(s) 910, 1743
GluI GCNGC 4 cut(s) 59, 62, 137, 907
GsaI CCCAGC 2 cut(s) 1006, 1661
GsuI CTGGAG 1 cut(s) 1563
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 7 cut(s) 540, 930, 1014, 1253, 1430, 1655, 1720
HapII CCGG 5 cut(s) 71, 365, 1376, 1544, 1745
HgaI GACGC 1 cut(s) 1102
HhaI GCGC 2 cut(s) 911, 1744
Hin1II CATG 7 cut(s) 362, 490, 728, 983, 1000, 1125, 1322
Hin6I GCGC 2 cut(s) 909, 1742
HinP1I GCGC 2 cut(s) 909, 1742
HincII GTYRAC 1 cut(s) 1234
HindII GTYRAC 1 cut(s) 1234
HindIII AAGCTT 1 cut(s) 1445
HpaII CCGG 5 cut(s) 71, 365, 1376, 1544, 1745
HphI GGTGA 8 cut(s) 134, 498, 512, 1014, 1169, 1375, 1406, 1907
Hpy166II GTNNAC 3 cut(s) 686, 1234, 1574
Hpy188I TCNGA 7 cut(s) 122, 459, 502, 780, 870, 1939, 1961
Hpy188III TCNNGA 9 cut(s) 205, 241, 627, 820, 1268, 1534, 1544, 1556, 1580
Hpy8I GTNNAC 3 cut(s) 686, 1234, 1574
Hpy99I CGWCG 1 cut(s) 1096
HpyAV CCTTC 3 cut(s) 1179, 1396, 1759
HpyCH4IV ACGT 4 cut(s) 78, 652, 1043, 1966
HpyCH4V TGCA 5 cut(s) 289, 991, 1130, 1325, 1625
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 912, 927, 1187, 1436, 1475
HpySE526I ACGT 4 cut(s) 78, 652, 1043, 1966
Hsp92II CATG 7 cut(s) 362, 490, 728, 983, 1000, 1125, 1322
HspAI GCGC 2 cut(s) 909, 1742
Kpn2I TCCGGA 1 cut(s) 1543
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
LmnI GCTCC 4 cut(s) 96, 459, 848, 1617
Lsp1109I GCAGC 2 cut(s) 73, 918
MabI ACCWGGT 1 cut(s) 1567
MaeII ACGT 4 cut(s) 78, 652, 1043, 1966
MaeIII GTNAC 7 cut(s) 74, 273, 653, 973, 1686, 1813, 1973
MalI GATC 7 cut(s) 200, 312, 531, 813, 856, 1083, 1963
MboI GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
MboII GAAGA 6 cut(s) 193, 313, 582, 1690, 1774, 1834
MfeI CAATTG 1 cut(s) 1865
MflI RGATCY 3 cut(s) 198, 529, 854
MhlI GDGCHC 4 cut(s) 120, 652, 958, 1192
MluCI AATT 6 cut(s) 1077, 1260, 1290, 1802, 1865, 1982
MlyI GAGTC 4 cut(s) 497, 506, 835, 1943
MmeI TCCRAC 2 cut(s) 303, 1680
MroI TCCGGA 1 cut(s) 1543
MseI TTAA 7 cut(s) 429, 1070, 1076, 1194, 1212, 1667, 1758
MspA1I CMGCKG 3 cut(s) 159, 785, 1661
MspCI CTTAAG 1 cut(s) 1193
MspI CCGG 5 cut(s) 71, 365, 1376, 1544, 1745
MunI CAATTG 1 cut(s) 1865
Mva1269I GAATGC 1 cut(s) 1955
MvaI CCWGG 8 cut(s) 255, 534, 548, 715, 1086, 1368, 1569, 1617
MwoI GCNNNNNNNGC 6 cut(s) 136, 912, 927, 1187, 1436, 1475
NciI CCSGG 2 cut(s) 71, 72
NcoI CCATGG 1 cut(s) 486
NdeII GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
NheI GCTAGC 1 cut(s) 749
NlaIII CATG 7 cut(s) 362, 490, 728, 983, 1000, 1125, 1322
NlaIV GGNNCC 6 cut(s) 531, 552, 619, 1641, 1656, 1876
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 5 cut(s) 74, 653, 973, 1813, 1973
NspI RCATGY 2 cut(s) 983, 1125
NspV TTCGAA 1 cut(s) 1360
PaqCI CACCTGC 1 cut(s) 517
PciI ACATGT 1 cut(s) 1121
PctI GAATGC 1 cut(s) 1955
PfeI GAWTC 6 cut(s) 28, 394, 642, 663, 1019, 1116
PfoI TCCNGGA 2 cut(s) 713, 1366
PkrI GCNGC 4 cut(s) 60, 63, 138, 908
PleI GAGTC 4 cut(s) 497, 505, 835, 1942
PmaCI CACGTG 1 cut(s) 653
PmlI CACGTG 1 cut(s) 653
PpsI GAGTC 4 cut(s) 497, 505, 835, 1942
Ppu21I YACGTR 2 cut(s) 79, 653
PscI ACATGT 1 cut(s) 1121
Psp6I CCWGG 8 cut(s) 253, 532, 546, 713, 1084, 1366, 1567, 1615
PspCI CACGTG 1 cut(s) 653
PspFI CCCAGC 2 cut(s) 1002, 1657
PspGI CCWGG 8 cut(s) 253, 532, 546, 713, 1084, 1366, 1567, 1615
PspN4I GGNNCC 6 cut(s) 531, 552, 619, 1641, 1656, 1876
PspPI GGNCC 5 cut(s) 539, 551, 711, 1012, 1654
PsuI RGATCY 3 cut(s) 198, 529, 854
PvuII CAGCTG 2 cut(s) 785, 1661
RsaI GTAC 6 cut(s) 81, 233, 637, 1042, 1621, 1944
RsaNI GTAC 6 cut(s) 80, 232, 636, 1041, 1620, 1943
SaqAI TTAA 7 cut(s) 429, 1070, 1076, 1194, 1212, 1667, 1758
SatI GCNGC 4 cut(s) 59, 62, 137, 907
Sau3AI GATC 7 cut(s) 198, 310, 529, 811, 854, 1081, 1961
Sau96I GGNCC 5 cut(s) 539, 551, 711, 1012, 1654
SchI GAGTC 4 cut(s) 497, 506, 835, 1943
SduI GDGCHC 4 cut(s) 120, 652, 958, 1192
SexAI ACCWGGT 1 cut(s) 1567
SfuI TTCGAA 1 cut(s) 1360
SgrAI CRCCGGYG 1 cut(s) 1744
SinI GGWCC 2 cut(s) 551, 711
SmaI CCCGGG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 241, 1193
SmoI CTYRAG 2 cut(s) 241, 1193
Sse9I AATT 6 cut(s) 1077, 1260, 1290, 1802, 1865, 1982
SsiI CCGC 9 cut(s) 59, 137, 159, 251, 913, 1181, 1502, 1870, 1953
StyI CCWWGG 4 cut(s) 13, 486, 524, 1733
TaiI ACGT 4 cut(s) 81, 655, 1046, 1969
TaqI TCGA 3 cut(s) 626, 734, 1360
TasI AATT 6 cut(s) 1077, 1260, 1290, 1802, 1865, 1982
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 61, 139
TfiI GAWTC 6 cut(s) 28, 394, 642, 663, 1019, 1116
Tru1I TTAA 7 cut(s) 429, 1070, 1076, 1194, 1212, 1667, 1758
Tru9I TTAA 7 cut(s) 429, 1070, 1076, 1194, 1212, 1667, 1758
TscAI CASTG 3 cut(s) 324, 619, 1824
TseFI GTSAC 5 cut(s) 74, 653, 973, 1813, 1973
TseI GCWGC 2 cut(s) 61, 906
Tsp45I GTSAC 5 cut(s) 74, 653, 973, 1813, 1973
TspDTI ATGAA 4 cut(s) 1046, 1466, 1575, 1702
TspGWI ACGGA 4 cut(s) 1331, 1379, 1858, 1939
TspMI CCCGGG 1 cut(s) 70
TspRI CASTG 3 cut(s) 324, 619, 1824
Vha464I CTTAAG 1 cut(s) 1193
VpaK11BI GGWCC 2 cut(s) 551, 711
XapI RAATTY 1 cut(s) 1982
XbaI TCTAGA 1 cut(s) 1267
XceI RCATGY 2 cut(s) 983, 1125
XmaI CCCGGG 1 cut(s) 70
XmaJI CCTAGG 2 cut(s) 13, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.