Rw5G003970

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000094
Physical Location & Seq
Reverse (-)
3963146 .. 3971813
8668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G003970.1

Sequence Viewer

Length: 1212 bp
ATGGATGCTGAGAGCTTAGCTATGAAGTTTCAGTGGGGACTGAATGCTTCAATCCGGCGCGATGTCGCTGTTCTGGAACTGAAGACGGTAGAGCTCATTTTCGTTAAGGCTATGGCCATTGAGCAGGAGAACTTGACTCTCCAAGAACACGAATCGGCTGAGAGGGATTTCCAAAGAAAGGGAAAGGCAACTGCGGGGAGCAGTAAGACATCTGGGAATCGAGGTGGATTCTGGAAGAGACAGAGGACTAATCAGCAGGCACCAGCTAGGGCTGCAGCTGCACCTGCTAGGGTTGCACCTAATAGGCCGGTGGCGAACCCGAAGTGTTTCAATTGCAATGAGATGGGCCATGTTGCTCGAGATTGCACGAAACCTAAGAACTTGGCATGCTTCACATGTGGCCAGACGGGGCACTTCTCAAGGGATTGTACCCAGCAGCGTAGGGGACAAGGAAATCAGCAGAGGCATCTACCTCCGGGAAATGCTAGGTGTTTCAATTGCAATGAGATGGGCCATGTTGCTCGAGATTGCACGAAACCTAAGAACTTGGCATGCTTCACATGTGGCCAGACGGGGCACTTCTCAAGGGATTGTACCCAGCAGCGTAGGGGACAAGGAAATCAGCAGAGGCATCTACCTCCGGGAAATGCTAGGGTGTTTGCTATTGGTCAGCAGAATGCCGGAGTGGAAGGTACCTTATCCTTATTTGATTTCTTTGCTAGGGTGTTATTTGATACGGGAGCGTCCCACTCTTTCATATCTAGTTCTGTGGTTGATATGTTAGGTTTAACTCCTAGGCCTCTTGCTAGATCCTTGTGTGTTATTTCCCCACTTGGTGTTTCCCTTGAGCTTGATAAGTTTTGTGATGCTTGTCCAATTGTGATTGGTGGTAAGGAGTTTACCGCGGCCTTGATTGTATTAGCAGATCATAAGTATGATGTCATTTTGGGTATTGATTGGCTGAGGCCAAATCATGCTATGATTGATTGCTTTGAAATGGTAGTGTCATTTCATATACCTGGGCAGCCGGTGTTTCGTTATCGGTGTCTTAGGTCAGATACTGCTTTAAGGGCAGGATTCTTAGCTCATGTGGAGTCAGTGAGTTGTACGGCGGTTATGGCAGAGATTTCTGTGGTTTCCGAGTACAGTGATGTATTTCAGGAGATACCAGGATTACCTCCGAGAGGGAAGTGGATTTTGCTATCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 zf-CCHC

Protein Analysis

403

Amino Acids

44.41

Weight (kDa)

8.95

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 108 - 124 7.6e-08 Zinc knuckle
zf-CCHC PF00098 129 - 145 6.8e-08 Zinc knuckle
zf-CCHC PF00098 164 - 179 3.3e-07 Zinc knuckle
zf-CCHC PF00098 184 - 200 6.8e-08 Zinc knuckle
RVP_2 PF08284 226 - 337 2.2e-30 Retroviral aspartyl protease
gag-asp_proteas PF13975 241 - 322 6.2e-06 gag-polyprotein putative aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 292
Acc65I GGTACC 1 cut(s) 692
AccB1I GGYRCC 2 cut(s) 259, 692
AccII CGCG 2 cut(s) 60, 905
AciI CCGC 4 cut(s) 194, 903, 905, 1112
AclWI GGATC 1 cut(s) 804
AcoI YGGCCR 3 cut(s) 114, 400, 565
AcuI CTGAAG 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 5 cut(s) 430, 595, 694, 1108, 1145
AfiI CCNNNNNNNGG 2 cut(s) 178, 1184
AflIII ACRYGT 2 cut(s) 395, 560
AgsI TTSAA 4 cut(s) 51, 331, 496, 995
AjnI CCWGG 2 cut(s) 1018, 1168
AluBI AGCT 7 cut(s) 15, 20, 94, 266, 278, 850, 1085
AluI AGCT 7 cut(s) 15, 20, 94, 266, 278, 850, 1085
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 804
AlwNI CAGNNNCTG 1 cut(s) 1061
Ama87I CYCGRG 2 cut(s) 357, 522
AoxI GGCC 9 cut(s) 114, 305, 346, 400, 511, 565, 797, 906, 965
ApeKI GCWGC 6 cut(s) 272, 275, 278, 436, 601, 1024
Asp700I GAANNNNTTC 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 692
AspA2I CCTAGG 1 cut(s) 794
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 346, 511
AsuC2I CCSGG 2 cut(s) 477, 642
AvaI CYCGRG 2 cut(s) 357, 522
AvrII CCTAGG 1 cut(s) 794
BaeGI GKGCMC 2 cut(s) 414, 579
BalI TGGCCA 3 cut(s) 116, 402, 567
BanI GGYRCC 2 cut(s) 259, 692
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 962
BbvI GCAGC 6 cut(s) 259, 265, 287, 448, 613, 1036
BccI CCATC 2 cut(s) 337, 502
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 2 cut(s) 1020, 1170
BcnI CCSGG 2 cut(s) 477, 642
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 8 cut(s) 267, 288, 486, 651, 720, 762, 795, 807
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 7 cut(s) 273, 276, 279, 437, 602, 906, 1025
BlnI CCTAGG 1 cut(s) 794
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 7 cut(s) 274, 277, 280, 438, 603, 907, 1026
Bme1390I CCNGG 4 cut(s) 477, 642, 1020, 1170
BmeT110I CYCGRG 2 cut(s) 357, 522
BmgT120I GGNCC 2 cut(s) 346, 511
BmiI GGNNCC 2 cut(s) 261, 694
BmrFI CCNGG 4 cut(s) 477, 642, 1020, 1170
BmsI GCATC 3 cut(s) 475, 640, 856
BpiI GAAGAC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 962
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 3 cut(s) 403, 568, 866
BpuMI CCSGG 2 cut(s) 477, 642
Bsa29I ATCGAT 1 cut(s) 1205
BsaJI CCNNGG 3 cut(s) 794, 903, 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 1184
Bse118I RCCGGY 2 cut(s) 307, 1027
Bse3DI GCAATG 2 cut(s) 343, 508
BseBI CCWGG 2 cut(s) 1020, 1170
BseCI ATCGAT 1 cut(s) 1205
BseDI CCNNGG 3 cut(s) 794, 903, 1019
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 178, 1184
BseMI GCAATG 2 cut(s) 343, 508
BseMII CTCAG 2 cut(s) 150, 953
BseSI GKGCMC 2 cut(s) 414, 579
BseXI GCAGC 6 cut(s) 259, 265, 287, 448, 613, 1036
BseYI CCCAGC 2 cut(s) 432, 597
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 60, 905
BshFI GGCC 9 cut(s) 116, 307, 348, 402, 513, 567, 799, 908, 967
BshNI GGYRCC 2 cut(s) 259, 692
BshVI ATCGAT 1 cut(s) 1205
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 357, 522
BsiSI CCGG 6 cut(s) 55, 308, 476, 641, 681, 1028
BslFI GGGAC 4 cut(s) 51, 459, 624, 730
BslI CCNNNNNNNGG 2 cut(s) 178, 1184
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 4 cut(s) 51, 459, 624, 730
BsmI GAATGC 2 cut(s) 49, 682
BsnI GGCC 9 cut(s) 116, 307, 348, 402, 513, 567, 799, 908, 967
BsoBI CYCGRG 2 cut(s) 357, 522
Bsp1286I GDGCHC 3 cut(s) 96, 414, 579
Bsp143I GATC 2 cut(s) 809, 925
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 4 cut(s) 194, 903, 905, 1112
BspANI GGCC 9 cut(s) 116, 307, 348, 402, 513, 567, 799, 908, 967
BspCNI CTCAG 2 cut(s) 151, 954
BspDI ATCGAT 1 cut(s) 1205
BspFNI CGCG 2 cut(s) 60, 905
BspLI GGNNCC 2 cut(s) 261, 694
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 1 cut(s) 804
BspT107I GGYRCC 2 cut(s) 259, 692
BsrDI GCAATG 2 cut(s) 343, 508
BsrFI RCCGGY 2 cut(s) 307, 1027
BssAI RCCGGY 2 cut(s) 307, 1027
BssECI CCNNGG 3 cut(s) 794, 903, 1019
BssMI GATC 2 cut(s) 809, 925
BssT1I CCWWGG 1 cut(s) 794
Bst2UI CCWGG 2 cut(s) 1020, 1170
Bst4CI ACNGT 2 cut(s) 88, 1148
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 258, 388, 553
BstDEI CTNAG 8 cut(s) 9, 16, 159, 375, 540, 962, 1049, 1081
BstDSI CCRYGG 1 cut(s) 903
BstENI CCTNNNNNAGG 1 cut(s) 1182
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 60, 905
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 2 cut(s) 812, 928
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 809, 925
BstMWI GCNNNNNNNGC 6 cut(s) 272, 278, 284, 293, 1070, 1118
BstNI CCWGG 2 cut(s) 1020, 1170
BstNSI RCATGY 4 cut(s) 390, 399, 555, 564
BstSCI CCNGG 4 cut(s) 475, 640, 1018, 1168
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 414, 579
BstUI CGCG 2 cut(s) 60, 905
BstV1I GCAGC 6 cut(s) 259, 265, 287, 448, 613, 1036
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 809
BstYI RGATCY 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 1205
BsuRI GGCC 9 cut(s) 116, 307, 348, 402, 513, 567, 799, 908, 967
BsuTUI ATCGAT 1 cut(s) 1205
BtgI CCRYGG 1 cut(s) 903
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 3 cut(s) 38, 1104, 1153
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 258, 388, 553
CaiI CAGNNNCTG 1 cut(s) 1061
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 2 cut(s) 307, 1027
Cfr13I GGNCC 2 cut(s) 346, 511
Cfr42I CCGCGG 1 cut(s) 906
ClaI ATCGAT 1 cut(s) 1205
CseI GACGC 1 cut(s) 732
Csp6I GTAC 5 cut(s) 429, 594, 693, 1107, 1144
CviAII CATG 8 cut(s) 350, 387, 396, 515, 552, 561, 974, 1088
CviQI GTAC 5 cut(s) 429, 594, 693, 1107, 1144
DdeI CTNAG 8 cut(s) 9, 16, 159, 375, 540, 962, 1049, 1081
DpnI GATC 2 cut(s) 811, 927
DpnII GATC 2 cut(s) 809, 925
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 3 cut(s) 114, 400, 565
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 794
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 357, 522
EcoICRI GAGCTC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 1182
EcoRII CCWGG 2 cut(s) 1018, 1168
EcoT14I CCWWGG 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 794
FaeI CATG 8 cut(s) 353, 390, 399, 518, 555, 564, 977, 1091
FaqI GGGAC 4 cut(s) 51, 459, 624, 730
FatI CATG 8 cut(s) 349, 386, 395, 514, 551, 560, 973, 1087
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 7 cut(s) 273, 276, 279, 437, 602, 906, 1025
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 7 cut(s) 273, 276, 279, 437, 602, 906, 1025
FspBI CTAG 8 cut(s) 267, 288, 486, 651, 720, 762, 795, 807
GlaI GCGC 1 cut(s) 59
GluI GCNGC 7 cut(s) 273, 276, 279, 437, 602, 906, 1025
GsaI CCCAGC 2 cut(s) 436, 601
HaeIII GGCC 9 cut(s) 116, 307, 348, 402, 513, 567, 799, 908, 967
HapII CCGG 6 cut(s) 55, 308, 476, 641, 681, 1028
HgaI GACGC 1 cut(s) 732
HhaI GCGC 1 cut(s) 60
Hin1II CATG 8 cut(s) 353, 390, 399, 518, 555, 564, 977, 1091
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 6 cut(s) 136, 152, 217, 228, 1077, 1094
HpaII CCGG 6 cut(s) 55, 308, 476, 641, 681, 1028
Hpy166II GTNNAC 1 cut(s) 900
Hpy188I TCNGA 3 cut(s) 1057, 1141, 1182
Hpy188III TCNNGA 5 cut(s) 74, 232, 359, 524, 1160
Hpy8I GTNNAC 1 cut(s) 900
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 2 cut(s) 88, 1148
HpyCH4V TGCA 7 cut(s) 275, 281, 296, 336, 366, 501, 531
HpyF10VI GCNNNNNNNGC 6 cut(s) 272, 278, 284, 293, 1070, 1118
HpyF3I CTNAG 8 cut(s) 9, 16, 159, 375, 540, 962, 1049, 1081
Hsp92II CATG 8 cut(s) 353, 390, 399, 518, 555, 564, 977, 1091
HspAI GCGC 1 cut(s) 58
KpnI GGTACC 1 cut(s) 696
KspI CCGCGG 1 cut(s) 906
Kzo9I GATC 2 cut(s) 809, 925
LmnI GCTCC 2 cut(s) 198, 740
Lsp1109I GCAGC 6 cut(s) 259, 265, 287, 448, 613, 1036
LweI GCATC 3 cut(s) 475, 640, 856
MaeI CTAG 8 cut(s) 267, 288, 486, 651, 720, 762, 795, 807
MalI GATC 2 cut(s) 811, 927
MboI GATC 2 cut(s) 809, 925
MboII GAAGA 2 cut(s) 94, 247
MfeI CAATTG 3 cut(s) 331, 496, 876
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 3 cut(s) 96, 414, 579
MlsI TGGCCA 3 cut(s) 116, 402, 567
MluCI AATT 3 cut(s) 331, 496, 876
MluNI TGGCCA 3 cut(s) 116, 402, 567
MlyI GAGTC 2 cut(s) 130, 1103
Mox20I TGGCCA 3 cut(s) 116, 402, 567
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 3 cut(s) 116, 402, 567
MseI TTAA 3 cut(s) 105, 788, 1067
MslI CAYNNNNRTG 1 cut(s) 933
Msp20I TGGCCA 3 cut(s) 116, 402, 567
MspA1I CMGCKG 2 cut(s) 278, 905
MspI CCGG 6 cut(s) 55, 308, 476, 641, 681, 1028
MspR9I CCNGG 4 cut(s) 477, 642, 1020, 1170
MunI CAATTG 3 cut(s) 331, 496, 876
Mva1269I GAATGC 2 cut(s) 49, 682
MvaI CCWGG 2 cut(s) 1020, 1170
MvnI CGCG 2 cut(s) 60, 905
MwoI GCNNNNNNNGC 6 cut(s) 272, 278, 284, 293, 1070, 1118
NciI CCSGG 2 cut(s) 477, 642
NdeII GATC 2 cut(s) 809, 925
NlaIII CATG 8 cut(s) 353, 390, 399, 518, 555, 564, 977, 1091
NlaIV GGNNCC 2 cut(s) 261, 694
NspI RCATGY 4 cut(s) 390, 399, 555, 564
PaeI GCATGC 2 cut(s) 390, 555
PaeR7I CTCGAG 2 cut(s) 357, 522
PaqCI CACCTGC 1 cut(s) 292
PceI AGGCCT 1 cut(s) 799
PciI ACATGT 2 cut(s) 395, 560
PctI GAATGC 2 cut(s) 49, 682
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 4 cut(s) 152, 217, 228, 1077
PfoI TCCNGGA 2 cut(s) 475, 640
PkrI GCNGC 7 cut(s) 274, 277, 280, 438, 603, 907, 1026
PleI GAGTC 2 cut(s) 130, 1102
PpsI GAGTC 2 cut(s) 130, 1102
PscI ACATGT 2 cut(s) 395, 560
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 1018, 1168
PspFI CCCAGC 2 cut(s) 432, 597
PspGI CCWGG 2 cut(s) 1018, 1168
PspN4I GGNNCC 2 cut(s) 261, 694
PspPI GGNCC 2 cut(s) 346, 511
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 809
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 5 cut(s) 430, 595, 694, 1108, 1145
RsaNI GTAC 5 cut(s) 429, 594, 693, 1107, 1144
RseI CAYNNNNRTG 1 cut(s) 933
SacI GAGCTC 1 cut(s) 96
SacII CCGCGG 1 cut(s) 906
SaqAI TTAA 3 cut(s) 105, 788, 1067
SatI GCNGC 7 cut(s) 273, 276, 279, 437, 602, 906, 1025
Sau3AI GATC 2 cut(s) 809, 925
Sau96I GGNCC 2 cut(s) 346, 511
SchI GAGTC 2 cut(s) 130, 1103
ScrFI CCNGG 4 cut(s) 477, 642, 1020, 1170
SduI GDGCHC 3 cut(s) 96, 414, 579
SfaNI GCATC 3 cut(s) 475, 640, 856
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 2 cut(s) 357, 522
Sfr303I CCGCGG 1 cut(s) 906
SgrBI CCGCGG 1 cut(s) 906
SlaI CTCGAG 2 cut(s) 357, 522
SmiMI CAYNNNNRTG 1 cut(s) 933
SmlI CTYRAG 5 cut(s) 357, 418, 522, 583, 845
SmoI CTYRAG 5 cut(s) 357, 418, 522, 583, 845
SphI GCATGC 2 cut(s) 390, 555
Sse9I AATT 3 cut(s) 331, 496, 876
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 4 cut(s) 194, 903, 905, 1112
SspMI CTAG 8 cut(s) 267, 288, 486, 651, 720, 762, 795, 807
SstI GAGCTC 1 cut(s) 96
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 4 cut(s) 475, 640, 1018, 1168
StyI CCWWGG 1 cut(s) 794
TaaI ACNGT 2 cut(s) 88, 1148
TaqI TCGA 4 cut(s) 220, 358, 523, 1205
TasI AATT 3 cut(s) 331, 496, 876
TatI WGTACW 1 cut(s) 1143
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 4 cut(s) 152, 217, 228, 1077
Tru1I TTAA 3 cut(s) 105, 788, 1067
Tru9I TTAA 3 cut(s) 105, 788, 1067
TscAI CASTG 3 cut(s) 38, 1104, 1153
TseI GCWGC 6 cut(s) 272, 275, 278, 436, 601, 1024
TspDTI ATGAA 3 cut(s) 38, 745, 1001
TspRI CASTG 3 cut(s) 38, 1104, 1153
XagI CCTNNNNNAGG 1 cut(s) 1182
XceI RCATGY 4 cut(s) 390, 399, 555, 564
XhoI CTCGAG 2 cut(s) 357, 522
XmaJI CCTAGG 1 cut(s) 794
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 8 cut(s) 267, 288, 486, 651, 720, 762, 795, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.