RchiOBHm_Chr6g0271231

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000094
Physical Location & Seq
Reverse (-)
30350129 .. 30352313
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24331

Sequence Viewer

Length: 1563 bp
ATGAGATCCGGACGCAGATCTCGTGCTGGCAGGAACCATTCACCCGCTGGTGAGGGTGATGATGAGCAGGTTCCTCGTGGGTTGTTACGGACCGTTGAGCGGTTGTTTGAGCGTTTTGCAGCGGCACTCCCCAATCCTAGGACTGACTATACTGTGGAGCGTGCCAGACGCCATGGGGCGTATACTTTCTCTAGTGCTCCTACGGAGTCCGTAGCAGGAGACTGGATTACCCGCATGGAGAGAGTATTTGAGTCCTTGGGTTGTCCAGCTGCTAGGAGGGTTCCTTTGGCTATTGACCTCCTAGACGGGGATGCATGGCTTTGGTGGCAGGGTCCCAGGAATATGGGTTATGACCCAACTACCATGACTTGGGAAGAGTTCAAAACGGAGTTCTCAAATCGGTACTATAATCAAGCATCCCAGCACCGTCTCCGATTTGAGTTCATGCAGTTGAAGCAGACTGAGGAGATGACTGTGTTACAGTATGAGGAGCGTTTCATTGCTTTGTCTCGGTTTGCCCCTGAGTTGGTGGCGACAGAAAAGTTGAAGGTTGATCAGTTTATCAATGGCCTTCTACCTGTATATCGGGATTGGTTGGCGCCTCATGATTATCCGACTTTTAAGTTAGCTGTGGAGGCTGCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCTAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCGTTTCAGGGGACGCTTCAGGAGGCCTGGGCAGACCGGTAGGAGACAGTCCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGTAGACAGGCGATTCCGAGAGACTATCCCCAGTGTGCTACTTGTGGTAGACACCATGCAGGCCCGTGTCAGGCAGGTGTGGGGACTTGTTACCAGTGTGGCCAGTGGGGTCACTACAGGAGAGAATGCCCTCAGTTGACTCAGGGAGCCTTCACTACTACTGGTCAGAGTATGGGTCAGACCTCTGTGGGTGCTACTAGTTCGGGTTCTCATGGCAGTTTGTCAGGCAGGAGCAGCACACAGCCGGGTCGTGGACAGAGAGGGCGTCCAGTGACCCAGGCCCGTCTTCATGCTATGACCCAGCAGGAGGGTCGCACTGCACCGAACGTCATTATGGGTATGTTAATTGTTTTTGGTCAACCAGCTTTCATTTTGATTGATCCTGGAGCCTCTCACTCCTTTATGTCTAAGAGGTTTTCTTTCTTTGCTAATGTGCCCCCATCTCTCCTACTCGGAGAGTGGCATGTTGTTCTACCATCGGGGGAAAGACATAGAATTGAATGGGTACATCGTTTTTGTGGAGTGTTTGTAGAAGGAGTTTGCTTAGAGGCGGACTTGATTCCATTTGAGTTAGTGGAGTTTGATGTAATCCTCGGGATGGATTTCCTACGGATGCATCATGCCTTAGTGGATTGCTTTTGTAGTACTGTATTATTTCGGAGTGATACGCTCAAAGCAAGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

520

Amino Acids

57.95

Weight (kDa)

9.35

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 100 - 192 6.8e-15 Retrotransposon gag protein
Ty3_capsid PF19259 101 - 218 2e-08 Ty3 transposon capsid-like protein
RVP_2 PF08284 383 - 512 2e-26 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 941
Acc36I ACCTGC 2 cut(s) 58, 941
AccB1I GGYRCC 1 cut(s) 598
AccB7I CCANNNNNTGG 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 4 cut(s) 182, 760, 880, 925
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 6 cut(s) 45, 100, 122, 232, 693, 1427
AclWI GGATC 1 cut(s) 1250
AcoI YGGCCR 1 cut(s) 976
AcuI CTGAAG 1 cut(s) 793
AcyI GRCGYC 3 cut(s) 169, 599, 1141
AfaI GTAC 3 cut(s) 404, 1383, 1522
AgeI ACCGGT 1 cut(s) 827
AgsI TTSAA 4 cut(s) 382, 454, 547, 1376
AhlI ACTAGT 1 cut(s) 1073
AjnI CCWGG 5 cut(s) 335, 817, 842, 1152, 1258
AluBI AGCT 4 cut(s) 269, 629, 783, 1241
AluI AGCT 4 cut(s) 269, 629, 783, 1241
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 5 cut(s) 213, 434, 513, 829, 891
AlwI GGATC 1 cut(s) 1250
Ama87I CYCGRG 1 cut(s) 1469
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 6 cut(s) 568, 707, 815, 937, 976, 1155
ApeKI GCWGC 4 cut(s) 119, 269, 638, 1110
AsiGI ACCGGT 1 cut(s) 827
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 6 cut(s) 90, 332, 695, 707, 938, 1156
AsuC2I CCSGG 1 cut(s) 1122
AsuHPI GGTGA 3 cut(s) 33, 62, 68
AvaI CYCGRG 1 cut(s) 1469
AvaII GGWCC 3 cut(s) 90, 332, 695
AvrII CCTAGG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 1314
BalI TGGCCA 1 cut(s) 978
BanI GGYRCC 1 cut(s) 598
BauI CACGAG 2 cut(s) 21, 75
BbsI GAAGAC 1 cut(s) 1154
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 4 cut(s) 131, 256, 625, 1122
BccI CCATC 4 cut(s) 718, 1324, 1360, 1468
BcgI CGANNNNNNTGC 4 cut(s) 56, 90, 1169, 1203
BciT130I CCWGG 5 cut(s) 337, 819, 844, 1154, 1260
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 1122
BcoDI GTCTC 5 cut(s) 213, 434, 513, 829, 891
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 9 cut(s) 138, 192, 273, 302, 657, 729, 780, 858, 1074
BfmI CTRYAG 1 cut(s) 991
BfoI RGCGCY 1 cut(s) 602
BfuAI ACCTGC 2 cut(s) 58, 941
BglII AGATCT 1 cut(s) 17
BisI GCNGC 5 cut(s) 120, 123, 270, 639, 1111
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 5 cut(s) 121, 124, 271, 640, 1112
BmcAI AGTACT 1 cut(s) 1522
Bme1390I CCNGG 6 cut(s) 337, 819, 844, 1122, 1154, 1260
Bme18I GGWCC 3 cut(s) 90, 332, 695
BmeT110I CYCGRG 1 cut(s) 1469
BmgT120I GGNCC 6 cut(s) 90, 332, 695, 707, 938, 1156
BmrFI CCNGG 6 cut(s) 337, 819, 844, 1122, 1154, 1260
BmrI ACTGGG 2 cut(s) 693, 901
BmsI GCATC 5 cut(s) 301, 425, 752, 1479, 1501
BmuI ACTGGG 2 cut(s) 693, 901
BpiI GAAGAC 1 cut(s) 1154
BpmI CTGGAG 1 cut(s) 1281
BpuMI CCSGG 1 cut(s) 1122
BsaHI GRCGYC 3 cut(s) 169, 599, 1141
BsaJI CCNNGG 8 cut(s) 137, 172, 255, 335, 818, 843, 1152, 1468
BsaWI WCCGGW 2 cut(s) 8, 827
BsaXI ACNNNNNCTCC 2 cut(s) 1389, 1419
Bse118I RCCGGY 1 cut(s) 827
Bse1I ACTGG 8 cut(s) 227, 699, 864, 907, 970, 979, 1042, 1145
Bse3DI GCAATG 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 5 cut(s) 337, 819, 844, 1154, 1260
BseDI CCNNGG 8 cut(s) 137, 172, 255, 335, 818, 843, 1152, 1468
BseGI GGATG 4 cut(s) 316, 416, 1479, 1494
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 4 cut(s) 453, 513, 1022, 1031
BseNI ACTGG 8 cut(s) 227, 699, 864, 907, 970, 979, 1042, 1145
BseRI GAGGAG 2 cut(s) 479, 503
BseSI GKGCMC 1 cut(s) 1314
BseXI GCAGC 4 cut(s) 131, 256, 625, 1122
BseYI CCCAGC 2 cut(s) 420, 1176
BsgI GTGCAG 1 cut(s) 1179
BshFI GGCC 6 cut(s) 570, 709, 817, 939, 978, 1157
BshNI GGYRCC 1 cut(s) 598
BshTI ACCGGT 1 cut(s) 827
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 1469
BsiSI CCGG 3 cut(s) 9, 828, 1121
BslFI GGGAC 4 cut(s) 318, 681, 816, 973
BsmAI GTCTC 5 cut(s) 213, 434, 513, 829, 891
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 4 cut(s) 318, 681, 816, 973
BsmI GAATGC 1 cut(s) 1007
BsnI GGCC 6 cut(s) 570, 709, 817, 939, 978, 1157
BsoBI CYCGRG 1 cut(s) 1469
Bsp1286I GDGCHC 2 cut(s) 199, 1314
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 4 cut(s) 5, 17, 553, 1255
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 6 cut(s) 45, 100, 122, 232, 693, 1427
BspANI GGCC 6 cut(s) 570, 709, 817, 939, 978, 1157
BspCNI CTCAG 4 cut(s) 454, 514, 1021, 1030
BspEI TCCGGA 1 cut(s) 8
BspHI TCATGA 1 cut(s) 604
BspMI ACCTGC 2 cut(s) 58, 941
BspPI GGATC 1 cut(s) 1250
BspT107I GGYRCC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 827
BsrI ACTGG 8 cut(s) 227, 699, 864, 907, 970, 979, 1042, 1145
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 8 cut(s) 137, 172, 255, 335, 818, 843, 1152, 1468
BssMI GATC 4 cut(s) 5, 17, 553, 1255
BssNAI GTATAC 1 cut(s) 183
BssNI GRCGYC 3 cut(s) 169, 599, 1141
BssSI CACGAG 2 cut(s) 21, 75
BssT1I CCWWGG 3 cut(s) 137, 172, 255
Bst1107I GTATAC 1 cut(s) 183
Bst2BI CACGAG 2 cut(s) 21, 75
Bst2UI CCWGG 5 cut(s) 337, 819, 844, 1154, 1260
Bst4CI ACNGT 8 cut(s) 94, 154, 428, 475, 483, 671, 840, 1525
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 3 cut(s) 169, 599, 1141
BstC8I GCNNGC 4 cut(s) 28, 162, 937, 1555
BstDEI CTNAG 8 cut(s) 462, 522, 714, 1008, 1017, 1284, 1420, 1501
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 4 cut(s) 316, 416, 1479, 1494
BstH2I RGCGCY 1 cut(s) 602
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 4 cut(s) 8, 20, 556, 1258
BstMAI GTCTC 5 cut(s) 213, 434, 513, 829, 891
BstMBI GATC 4 cut(s) 5, 17, 553, 1255
BstMWI GCNNNNNNNGC 4 cut(s) 325, 454, 635, 1110
BstNI CCWGG 5 cut(s) 337, 819, 844, 1154, 1260
BstNSI RCATGY 1 cut(s) 1343
BstSCI CCNGG 6 cut(s) 335, 817, 842, 1120, 1152, 1258
BstSFI CTRYAG 1 cut(s) 991
BstSLI GKGCMC 1 cut(s) 1314
BstV1I GCAGC 4 cut(s) 131, 256, 625, 1122
BstV2I GAAGAC 1 cut(s) 1154
BstX2I RGATCY 2 cut(s) 5, 17
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 2 cut(s) 5, 17
BstZ17I GTATAC 1 cut(s) 183
BsuRI GGCC 6 cut(s) 570, 709, 817, 939, 978, 1157
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 4 cut(s) 316, 416, 1479, 1494
BtsI GCAGTG 2 cut(s) 852, 1191
BtsIMutI CAGTG 7 cut(s) 852, 871, 914, 977, 986, 1152, 1191
BveI ACCTGC 2 cut(s) 58, 941
Cac8I GCNNGC 4 cut(s) 28, 162, 937, 1555
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 6 cut(s) 90, 332, 695, 707, 938, 1156
CpoI CGGWCCG 1 cut(s) 90
CseI GACGC 4 cut(s) 21, 177, 813, 1130
Csp6I GTAC 3 cut(s) 403, 1382, 1521
CspAI ACCGGT 1 cut(s) 827
CspI CGGWCCG 1 cut(s) 90
CviQI GTAC 3 cut(s) 403, 1382, 1521
DdeI CTNAG 8 cut(s) 462, 522, 714, 1008, 1017, 1284, 1420, 1501
DinI GGCGCC 1 cut(s) 600
DpnI GATC 4 cut(s) 7, 19, 555, 1257
DpnII GATC 4 cut(s) 5, 17, 553, 1255
EaeI YGGCCR 1 cut(s) 976
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 1442
Eco130I CCWWGG 3 cut(s) 137, 172, 255
Eco147I AGGCCT 1 cut(s) 817
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 3 cut(s) 90, 332, 695
Eco57I CTGAAG 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 1469
EcoO109I RGGNCCY 1 cut(s) 332
EcoRII CCWGG 5 cut(s) 335, 817, 842, 1152, 1258
EcoRV GATATC 1 cut(s) 662
EcoT14I CCWWGG 3 cut(s) 137, 172, 255
EcoT22I ATGCAT 2 cut(s) 316, 1494
EgeI GGCGCC 1 cut(s) 600
EheI GGCGCC 1 cut(s) 600
ErhI CCWWGG 3 cut(s) 137, 172, 255
Esp3I CGTCTC 1 cut(s) 434
FaqI GGGAC 4 cut(s) 318, 681, 816, 973
FauI CCCGC 2 cut(s) 52, 239
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 4 cut(s) 182, 760, 880, 925
Fnu4HI GCNGC 5 cut(s) 120, 123, 270, 639, 1111
FokI GGATG 4 cut(s) 323, 403, 1486, 1501
Fsp4HI GCNGC 5 cut(s) 120, 123, 270, 639, 1111
FspBI CTAG 9 cut(s) 138, 192, 273, 302, 657, 729, 780, 858, 1074
GlaI GCGC 1 cut(s) 600
GluI GCNGC 5 cut(s) 120, 123, 270, 639, 1111
GsaI CCCAGC 2 cut(s) 424, 1180
GsuI CTGGAG 1 cut(s) 1281
HaeII RGCGCY 1 cut(s) 602
HaeIII GGCC 6 cut(s) 570, 709, 817, 939, 978, 1157
HapII CCGG 3 cut(s) 9, 828, 1121
HgaI GACGC 4 cut(s) 21, 177, 813, 1130
HhaI GCGC 1 cut(s) 601
Hin1I GRCGYC 3 cut(s) 169, 599, 1141
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HincII GTYRAC 2 cut(s) 1014, 1235
HindII GTYRAC 2 cut(s) 1014, 1235
HinfI GANTC 6 cut(s) 206, 251, 776, 889, 1015, 1435
HpaII CCGG 3 cut(s) 9, 828, 1121
HphI GGTGA 3 cut(s) 33, 62, 68
Hpy166II GTNNAC 7 cut(s) 183, 761, 881, 926, 1014, 1130, 1235
Hpy188I TCNGA 8 cut(s) 434, 615, 775, 894, 1044, 1056, 1331, 1536
Hpy188III TCNNGA 7 cut(s) 9, 587, 605, 665, 675, 811, 1471
Hpy8I GTNNAC 7 cut(s) 183, 761, 881, 926, 1014, 1130, 1235
HpyAV CCTTC 4 cut(s) 541, 581, 1036, 1403
HpyCH4III ACNGT 8 cut(s) 94, 154, 428, 475, 483, 671, 840, 1525
HpyCH4IV ACGT 1 cut(s) 1203
HpyCH4V TGCA 7 cut(s) 119, 314, 448, 743, 935, 1196, 1492
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 454, 635, 1110
HpyF3I CTNAG 8 cut(s) 462, 522, 714, 1008, 1017, 1284, 1420, 1501
HpySE526I ACGT 1 cut(s) 1203
Hsp92I GRCGYC 3 cut(s) 169, 599, 1141
HspAI GCGC 1 cut(s) 599
KasI GGCGCC 1 cut(s) 598
KflI GGGWCCC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 4 cut(s) 5, 17, 553, 1255
LmnI GCTCC 6 cut(s) 157, 202, 490, 1022, 1107, 1262
Lsp1109I GCAGC 4 cut(s) 131, 256, 625, 1122
LweI GCATC 5 cut(s) 301, 425, 752, 1479, 1501
MaeI CTAG 9 cut(s) 138, 192, 273, 302, 657, 729, 780, 858, 1074
MaeII ACGT 1 cut(s) 1203
MaeIII GTNAC 5 cut(s) 84, 477, 965, 986, 1147
MalI GATC 4 cut(s) 7, 19, 555, 1257
MbiI CCGCTC 1 cut(s) 100
MboI GATC 4 cut(s) 5, 17, 553, 1255
MboII GAAGA 2 cut(s) 386, 1154
MflI RGATCY 2 cut(s) 5, 17
MhlI GDGCHC 2 cut(s) 199, 1314
MlsI TGGCCA 1 cut(s) 978
MluCI AATT 3 cut(s) 720, 1221, 1371
MluNI TGGCCA 1 cut(s) 978
Mly113I GGCGCC 1 cut(s) 599
MlyI GAGTC 3 cut(s) 215, 260, 1009
MmeI TCCRAC 1 cut(s) 638
Mox20I TGGCCA 1 cut(s) 978
Mph1103I ATGCAT 2 cut(s) 316, 1494
MroI TCCGGA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 978
MseI TTAA 2 cut(s) 621, 1220
Msp20I TGGCCA 1 cut(s) 978
MspA1I CMGCKG 3 cut(s) 47, 122, 269
MspI CCGG 3 cut(s) 9, 828, 1121
MspR9I CCNGG 6 cut(s) 337, 819, 844, 1122, 1154, 1260
Mva1269I GAATGC 1 cut(s) 1007
MvaI CCWGG 5 cut(s) 337, 819, 844, 1154, 1260
MwoI GCNNNNNNNGC 4 cut(s) 325, 454, 635, 1110
NarI GGCGCC 1 cut(s) 599
NciI CCSGG 1 cut(s) 1122
NcoI CCATGG 1 cut(s) 172
NdeII GATC 4 cut(s) 5, 17, 553, 1255
NmuCI GTSAC 2 cut(s) 986, 1147
NsiI ATGCAT 2 cut(s) 316, 1494
NspI RCATGY 1 cut(s) 1343
PagI TCATGA 1 cut(s) 604
PaqCI CACCTGC 1 cut(s) 941
PceI AGGCCT 1 cut(s) 817
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 1 cut(s) 1007
PfeI GAWTC 3 cut(s) 776, 889, 1435
PflMI CCANNNNNTGG 1 cut(s) 369
PfoI TCCNGGA 1 cut(s) 1258
PinAI ACCGGT 1 cut(s) 827
PkrI GCNGC 5 cut(s) 121, 124, 271, 640, 1112
PleI GAGTC 3 cut(s) 214, 259, 1009
PluTI GGCGCC 1 cut(s) 602
PpsI GAGTC 3 cut(s) 214, 259, 1009
PpuMI RGGWCCY 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 332
Psp6I CCWGG 5 cut(s) 335, 817, 842, 1152, 1258
PspFI CCCAGC 2 cut(s) 420, 1176
PspGI CCWGG 5 cut(s) 335, 817, 842, 1152, 1258
PspPI GGNCC 6 cut(s) 90, 332, 695, 707, 938, 1156
PspPPI RGGWCCY 1 cut(s) 332
PsuI RGATCY 2 cut(s) 5, 17
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 404, 1383, 1522
RsaNI GTAC 3 cut(s) 403, 1382, 1521
Rsr2I CGGWCCG 1 cut(s) 90
RsrII CGGWCCG 1 cut(s) 90
SaqAI TTAA 2 cut(s) 621, 1220
SatI GCNGC 5 cut(s) 120, 123, 270, 639, 1111
Sau3AI GATC 4 cut(s) 5, 17, 553, 1255
Sau96I GGNCC 6 cut(s) 90, 332, 695, 707, 938, 1156
ScaI AGTACT 1 cut(s) 1522
SchI GAGTC 3 cut(s) 215, 260, 1009
ScrFI CCNGG 6 cut(s) 337, 819, 844, 1122, 1154, 1260
SduI GDGCHC 2 cut(s) 199, 1314
SfaNI GCATC 5 cut(s) 301, 425, 752, 1479, 1501
SfcI CTRYAG 1 cut(s) 991
SfoI GGCGCC 1 cut(s) 600
SinI GGWCC 3 cut(s) 90, 332, 695
SpeI ACTAGT 1 cut(s) 1073
Sse9I AATT 3 cut(s) 720, 1221, 1371
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 6 cut(s) 45, 100, 122, 232, 693, 1427
SspDI GGCGCC 1 cut(s) 598
SspMI CTAG 9 cut(s) 138, 192, 273, 302, 657, 729, 780, 858, 1074
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 6 cut(s) 335, 817, 842, 1120, 1152, 1258
StyI CCWWGG 3 cut(s) 137, 172, 255
TaaI ACNGT 8 cut(s) 94, 154, 428, 475, 483, 671, 840, 1525
TaiI ACGT 1 cut(s) 1206
TaqII GACCGA 1 cut(s) 778
TasI AATT 3 cut(s) 720, 1221, 1371
TatI WGTACW 1 cut(s) 1520
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 776, 889, 1435
Tru1I TTAA 2 cut(s) 621, 1220
Tru9I TTAA 2 cut(s) 621, 1220
TscAI CASTG 7 cut(s) 859, 871, 914, 977, 986, 1152, 1198
TseFI GTSAC 2 cut(s) 986, 1147
TseI GCWGC 4 cut(s) 119, 269, 638, 1110
Tsp45I GTSAC 2 cut(s) 986, 1147
TspDTI ATGAA 4 cut(s) 433, 487, 1154, 1234
TspGWI ACGGA 5 cut(s) 103, 199, 218, 401, 1501
TspRI CASTG 7 cut(s) 859, 871, 914, 977, 986, 1152, 1198
Van91I CCANNNNNTGG 1 cut(s) 369
VpaK11BI GGWCC 3 cut(s) 90, 332, 695
XceI RCATGY 1 cut(s) 1343
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XmaJI CCTAGG 1 cut(s) 137
XmiI GTMKAC 4 cut(s) 182, 760, 880, 925
XspI CTAG 9 cut(s) 138, 192, 273, 302, 657, 729, 780, 858, 1074
ZrmI AGTACT 1 cut(s) 1522
Zsp2I ATGCAT 2 cut(s) 316, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.