transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 43 - 125 | 1.3e-14 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 47, 149 |
| AciI | CCGC | 2 cut(s) | 145, 177 |
| AclWI | GGATC | 1 cut(s) | 264 |
| AfaI | GTAC | 3 cut(s) | 107, 168, 368 |
| AgsI | TTSAA | 2 cut(s) | 82, 364 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 164, 196 |
| AluBI | AGCT | 2 cut(s) | 346, 397 |
| AluI | AGCT | 2 cut(s) | 346, 397 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| AlwI | GGATC | 1 cut(s) | 264 |
| ApeKI | GCWGC | 1 cut(s) | 245 |
| AspS9I | GGNCC | 1 cut(s) | 289 |
| AsuHPI | GGTGA | 1 cut(s) | 226 |
| AvaII | GGWCC | 1 cut(s) | 289 |
| BanI | GGYRCC | 2 cut(s) | 47, 149 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 89, 121 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvI | GCAGC | 1 cut(s) | 257 |
| BccI | CCATC | 1 cut(s) | 38 |
| BclI | TGATCA | 1 cut(s) | 136 |
| BfmI | CTRYAG | 1 cut(s) | 243 |
| BisI | GCNGC | 1 cut(s) | 246 |
| BlsI | GCNGC | 1 cut(s) | 247 |
| BmcAI | AGTACT | 1 cut(s) | 368 |
| Bme18I | GGWCC | 1 cut(s) | 289 |
| BmgT120I | GGNCC | 1 cut(s) | 289 |
| BmiI | GGNNCC | 3 cut(s) | 49, 151, 407 |
| BmsI | GCATC | 1 cut(s) | 207 |
| BpuEI | CTTGAG | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 2 cut(s) | 8, 285 |
| BsaWI | WCCGGW | 1 cut(s) | 19 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 223, 253 |
| BseDI | CCNNGG | 2 cut(s) | 8, 285 |
| BseGI | GGATG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 257 |
| BshNI | GGYRCC | 2 cut(s) | 47, 149 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 1 cut(s) | 19 |
| Bsp143I | GATC | 4 cut(s) | 136, 185, 256, 300 |
| BspACI | CCGC | 2 cut(s) | 145, 177 |
| BspHI | TCATGA | 1 cut(s) | 261 |
| BspLI | GGNNCC | 3 cut(s) | 49, 151, 407 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BspT107I | GGYRCC | 2 cut(s) | 47, 149 |
| BssECI | CCNNGG | 2 cut(s) | 8, 285 |
| BssMI | GATC | 4 cut(s) | 136, 185, 256, 300 |
| BssT1I | CCWWGG | 2 cut(s) | 8, 285 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 293, 371 |
| BstF5I | GGATG | 1 cut(s) | 49 |
| BstKTI | GATC | 4 cut(s) | 139, 188, 259, 303 |
| BstMBI | GATC | 4 cut(s) | 136, 185, 256, 300 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 245 |
| BstSFI | CTRYAG | 1 cut(s) | 243 |
| BstV1I | GCAGC | 1 cut(s) | 257 |
| BstX2I | RGATCY | 1 cut(s) | 256 |
| BstYI | RGATCY | 1 cut(s) | 256 |
| BtsCI | GGATG | 1 cut(s) | 49 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| CciI | TCATGA | 1 cut(s) | 261 |
| Cfr13I | GGNCC | 1 cut(s) | 289 |
| Csp6I | GTAC | 3 cut(s) | 106, 167, 367 |
| CviAII | CATG | 1 cut(s) | 262 |
| CviJI | RGCY | 3 cut(s) | 248, 346, 397 |
| CviKI_1 | RGCY | 3 cut(s) | 248, 346, 397 |
| CviQI | GTAC | 3 cut(s) | 106, 167, 367 |
| DpnI | GATC | 4 cut(s) | 138, 187, 258, 302 |
| DpnII | GATC | 4 cut(s) | 136, 185, 256, 300 |
| Eco130I | CCWWGG | 2 cut(s) | 8, 285 |
| Eco47I | GGWCC | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 2 cut(s) | 8, 285 |
| ErhI | CCWWGG | 2 cut(s) | 8, 285 |
| FaeI | CATG | 1 cut(s) | 265 |
| FaiI | YATR | 6 cut(s) | 72, 195, 204, 254, 263, 351 |
| FatI | CATG | 1 cut(s) | 261 |
| FauI | CCCGC | 1 cut(s) | 138 |
| FbaI | TGATCA | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 1 cut(s) | 246 |
| FokI | GGATG | 1 cut(s) | 56 |
| Fsp4HI | GCNGC | 1 cut(s) | 246 |
| GluI | GCNGC | 1 cut(s) | 246 |
| HapII | CCGG | 1 cut(s) | 20 |
| Hin1II | CATG | 1 cut(s) | 265 |
| HinfI | GANTC | 1 cut(s) | 265 |
| HpaII | CCGG | 1 cut(s) | 20 |
| HphI | GGTGA | 1 cut(s) | 226 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 2 cut(s) | 163, 185 |
| Hpy188III | TCNNGA | 2 cut(s) | 262, 298 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 293, 371 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 1 cut(s) | 245 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 245 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92II | CATG | 1 cut(s) | 265 |
| Ksp22I | TGATCA | 1 cut(s) | 136 |
| Kzo9I | GATC | 4 cut(s) | 136, 185, 256, 300 |
| LmnI | GCTCC | 2 cut(s) | 22, 244 |
| LpnPI | CCDG | 3 cut(s) | 33, 255, 308 |
| Lsp1109I | GCAGC | 1 cut(s) | 257 |
| LweI | GCATC | 1 cut(s) | 207 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 1 cut(s) | 88 |
| MalI | GATC | 4 cut(s) | 138, 187, 258, 302 |
| MboI | GATC | 4 cut(s) | 136, 185, 256, 300 |
| MboII | GAAGA | 2 cut(s) | 49, 109 |
| MfeI | CAATTG | 1 cut(s) | 140 |
| MflI | RGATCY | 1 cut(s) | 256 |
| MhlI | GDGCHC | 1 cut(s) | 19 |
| MluCI | AATT | 3 cut(s) | 77, 120, 140 |
| MnlI | CCTC | 1 cut(s) | 384 |
| MseI | TTAA | 3 cut(s) | 33, 230, 354 |
| MspI | CCGG | 1 cut(s) | 20 |
| MunI | CAATTG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 245 |
| NdeII | GATC | 4 cut(s) | 136, 185, 256, 300 |
| NlaIII | CATG | 1 cut(s) | 265 |
| NlaIV | GGNNCC | 3 cut(s) | 49, 151, 407 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| PagI | TCATGA | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 274 |
| PfeI | GAWTC | 1 cut(s) | 265 |
| PkrI | GCNGC | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 3 cut(s) | 49, 151, 407 |
| PspPI | GGNCC | 1 cut(s) | 289 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PsuI | RGATCY | 1 cut(s) | 256 |
| RsaI | GTAC | 3 cut(s) | 107, 168, 368 |
| RsaNI | GTAC | 3 cut(s) | 106, 167, 367 |
| SaqAI | TTAA | 3 cut(s) | 33, 230, 354 |
| SatI | GCNGC | 1 cut(s) | 246 |
| Sau3AI | GATC | 4 cut(s) | 136, 185, 256, 300 |
| Sau96I | GGNCC | 1 cut(s) | 289 |
| ScaI | AGTACT | 1 cut(s) | 368 |
| SduI | GDGCHC | 1 cut(s) | 19 |
| SetI | ASST | 5 cut(s) | 53, 193, 348, 399, 419 |
| SfaNI | GCATC | 1 cut(s) | 207 |
| SfcI | CTRYAG | 1 cut(s) | 243 |
| SinI | GGWCC | 1 cut(s) | 289 |
| SmlI | CTYRAG | 1 cut(s) | 52 |
| SmoI | CTYRAG | 1 cut(s) | 52 |
| Sse9I | AATT | 3 cut(s) | 77, 120, 140 |
| SsiI | CCGC | 2 cut(s) | 145, 177 |
| StyI | CCWWGG | 2 cut(s) | 8, 285 |
| TaaI | ACNGT | 3 cut(s) | 94, 293, 371 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TaqI | TCGA | 1 cut(s) | 268 |
| TasI | AATT | 3 cut(s) | 77, 120, 140 |
| TatI | WGTACW | 1 cut(s) | 366 |
| TfiI | GAWTC | 1 cut(s) | 265 |
| Tru1I | TTAA | 3 cut(s) | 33, 230, 354 |
| Tru9I | TTAA | 3 cut(s) | 33, 230, 354 |
| TscAI | CASTG | 1 cut(s) | 99 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 245 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| TspDTI | ATGAA | 2 cut(s) | 278, 338 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| TspRI | CASTG | 1 cut(s) | 99 |
| VpaK11BI | GGWCC | 1 cut(s) | 289 |
| ZrmI | AGTACT | 1 cut(s) | 368 |