FvH4_4g15583

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
19329644 .. 19333221
3578 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15583.t1

Sequence Viewer

Length: 2844 bp
ATGGATCCTCCGCGAGGGAGAGCTAGAGGCAGAGGTAGGGCCAGAGGGGCCGGTAGGGCCAGAGGGGCTGGTAGAGCCAGAGGGGCAGGTGGGGCCAGAGGCAGAGGTAGGGTTCCACCTGTGGATGACTTCTTTGAGGAGGAGGGTATCATCAGGTTAGGTGCGCCTTCCTTTCTTGGAGGTACAGACTACCTCGTAGCTGATCATTGGATAGAGGGCATTGAGACATACTTCACCATGATCACGTGTACGGAGATCGAGAAGATGCGTATTGCTACATTTCTTCTCAAGGATGAGGCACGGGGCCTGATGAGTGTCAGGGATTATGAGGCCCGTTTTTCTCAGCTGTATCGCTTGGCTAGAGAGATGGATGCAGTAGACTTGGCACAGCAGTTCATTCGGGGTTTGAGGCATGAGCTCCGGAAGTTGGTGACTTCCCACCGGTTTGCTACTCTAGCAGAAGCGGTGGAGAGTGCCCTTGCAGCAGGCCATTTTGCTAGAGATTGCACCCGACCTCAGGCTGGAGGGCAGGGTGTTCAGCAGAGACCATTACTTCTAGCGCTAGCCAGAGTATATGTCATTGGTCAGCGTGGTGCAGGAGTGGAAGGTACCATTCTTGTTTATGATCTGCTTGCTTCCGTTTTGTTTGACACGGGGGCAACTCGTTCCTTCATATCTAGCTCAGTGGTGAGGGCATTAGGCTTGACTCCGACGCCGCTTACTAGATCCTTGTGTGTTTCTTCGCCTCTCGGTGTTTCTATTGAGCTGGGCACTTTGTGTGATGCTTGCCCTATAGTGATTAGTGGGAGAGAGTTCCTTGCTTCCCTGATTGTGATTCCAGACCACTCCTATGATGTGATTTTGGGAGTGGATTGGCTAAGGCCAAACCATGCCTTGATTGACTGTTTTGGTATGGTAGTGTCATTCCACATTCCTGGACAGCCGAGCTTTCGCTATCGTTGTCATAGGTCGGACACGGCCATGTGGGAAGGAGTGTTGGCACACATTGAGGCTACCGGAAGTACCGTGGGTATTACGGATATTGCAGTAGTCTCTGAGTTTAGTGACGTGTTCCAGGAGATTCCGAGGTTACCTCCTAAGAGGGTAGTGGAGTTTGCTATCGATGTGGTACCAGGTACTTCACCGGTGTCAAAGACTCCTTATCAAATGGGGAGAACTGAACTTCAGGAGTTGAAGGTTCAGCTTAGAGGTGCTACACTATTCTCTAAGATTGATCTGAGGTCCGGTTATCACCAGTTGAGGGTGAAGGAGGAGGATATTCCGAAGACCGCTTTCAAGTCTAGATATGGGCATTATGAGTTTGTTGTTATGCCTTTTGGTCTAACAAATGCCCCTGCTGCTTTTATGGATTTGATGAACCTCATGTTCAGTGCTTATCTGGATGTGTTTGTAGTAGTATTTGTGGATGATATTTTGATTTACTCCAAGACTTTGGAGGATCATGATAAGCACCTACAGATCGTACTACAGGTTCTTAAGGAGGCCAAGTTGTATGCTAAGTTTGAGAAGTGTGAGTTTTGGAAGGAAGAGGTCAAGTTCTTTGGTCATGTGGTATCAAAGGAGGGGATTTCGTTGGATCCCTCTAAGGTGGAGGCGGTGTTGAATTGGAGTCGTCCCACTACTCCTACGGAGATCCGTAGTTTCTTGACAAAGAAGAATGCCAAGTTTGTGTGGACCGATGAGTGTGAAAAGGCATTTGAGGAGTTGAAGACTAGGTTGACTACCGCCCCAGTGTTGGTCATTCCTATTACTGGTGTCGGCTATGTTGTTTATAGCGACGCTTCTCATCGGGGTTTAGGTTGTGTGTTGATGCAGCTTGGCGGTGTTGTGGCATATGGCTCTAGGCAGTTGAAGGTTCATGAGAAGAATTATCCAACTCATGACCTAGAGCTAGCCGCTGTAGTATTTGCCTTGAAGATTTGGAGGCATTACTTGTATGGAGAGAAGTTCGAACTCTTTTCTGATCATAAGAGTTTGAAGTATTTATTCTCTCAGAAAGATTTGAACATGAGGCAAAGGAGGTGGATGGAGCTCCTTAAGGACTATGACTTCACTTTGGAGTATCACCCTGGGAAAGCCAATGTAGTGGCGGATGCATTGAGTAGAAAGCCTAGGGGTATAGTCGCCTCTATGATGGTGCAAGAGTGGCTCATGTTGGAGACTGCTTCTGAGTTTAGCATTCTAGCATCAGGCAGGGAGCAGGGGATCTTCCTTGGAAGCGCCTCTGTGCAGCCCACCTTGATTTCTAGGATCATCCAAGGCCAAGCACATGACGAGTTCTCACGTGCTAAAGTGGCGGAGTTAGTGGTGGACTTGTTGGATGGTTGTCCTACCGAGTGGTCGGTTGGATCAGATGGTGGATTGAGGTATAGATTGAGATTGTGTGTTCCCGATAGTAATGATCTCAAAGGGGAGATCCTTTGGGAGGCATATCGATCTCGTTATACGGTGCACCCAGGGAGCACCAAGATATATAAAGATTTGCGTAGGCAGTTTTGGTGGAGTGGGATGAAGAAAGATGTAGCAGAGTATGTGTCCAAGTGCCTCACTTGTCAGCAGGTGAAGGCGGAGCATCAAAGGCCAGGAGGTATGTTGCAGCCATTATCTATTCCTACTTGGAAGTGGGAGCAGATTTCTATGGACTTTGTGACTGGACTACCTAAGTCCAAGATTGGACATGATACTATATGGGTGATTGTGGACCGTTTGACGAAGTCAGCACATTTCCTTCCCGTGTCGATGTCGTACACGGTAGATGCTTTATGCAAGTTGTATGTGAAGGAGATAGTGAGACTTCATGGAGTGCCTACTTCGATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

948

Amino Acids

106.31

Weight (kDa)

8.65

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 201 - 308 4.9e-29 Retroviral aspartyl protease
gag-asp_proteas PF13975 214 - 294 9.9e-06 gag-polyprotein putative aspartyl protease
RVT_1 PF00078 392 - 524 1e-30 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 565 - 658 8.4e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 596 - 689 1.7e-31 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 808 - 863 2.8e-17 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 77, 2569
Acc36I ACCTGC 2 cut(s) 77, 2569
Acc65I GGTACC 2 cut(s) 608, 1129
AccB1I GGYRCC 2 cut(s) 608, 1129
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 978
AcuI CTGAAG 1 cut(s) 1169
AcvI CACGTG 2 cut(s) 246, 2306
AcyI GRCGYC 1 cut(s) 713
AdeI CACNNNGTG 1 cut(s) 777
AfaI GTAC 8 cut(s) 184, 250, 610, 1024, 1131, 1138, 1485, 2768
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 8 cut(s) 14, 427, 517, 521, 1261, 1756, 1772, 2446
AflII CTTAAG 2 cut(s) 1496, 2057
AflIII ACRYGT 2 cut(s) 245, 1068
AgeI ACCGGT 2 cut(s) 441, 1144
AgsI TTSAA 8 cut(s) 1195, 1297, 1624, 1729, 1873, 1936, 1999, 2026
AjiI CACGTC 1 cut(s) 1069
AjnI CCWGG 6 cut(s) 934, 1074, 1132, 2089, 2476, 2602
Alw21I GWGCWC 4 cut(s) 420, 2055, 2475, 2486
Alw26I GTCTC 5 cut(s) 218, 538, 1057, 2174, 2806
Alw44I GTGCAC 1 cut(s) 2471
Aor13HI TCCGGA 1 cut(s) 420
Aor51HI AGCGCT 1 cut(s) 561
ApaLI GTGCAC 1 cut(s) 2471
ApeKI GCWGC 5 cut(s) 482, 1358, 1834, 2251, 2617
AsiGI ACCGGT 2 cut(s) 441, 1144
Asp718I GGTACC 2 cut(s) 608, 1129
AspA2I CCTAGG 1 cut(s) 2132
AspLEI GCGC 3 cut(s) 166, 562, 2243
AspS9I GGNCC 9 cut(s) 39, 48, 57, 93, 304, 331, 1242, 1695, 2722
AsuHPI GGTGA 9 cut(s) 226, 442, 700, 1134, 1244, 1276, 2078, 2593, 2725
AsuII TTCGAA 1 cut(s) 1971
AsuNHI GCTAGC 2 cut(s) 562, 1912
AvaII GGWCC 3 cut(s) 1242, 1695, 2722
AvrII CCTAGG 1 cut(s) 2132
AxyI CCTNAGG 1 cut(s) 516
BaeGI GKGCMC 3 cut(s) 478, 773, 2475
BamHI GGATCC 2 cut(s) 4, 1597
BanI GGYRCC 2 cut(s) 608, 1129
BanII GRGCYC 2 cut(s) 420, 2055
BbrPI CACGTG 2 cut(s) 246, 2306
BbsI GAAGAC 2 cut(s) 1292, 1736
Bbv12I GWGCWC 4 cut(s) 420, 2055, 2475, 2486
BbvI GCAGC 5 cut(s) 494, 1345, 1846, 2263, 2629
BccI CCATC 5 cut(s) 361, 2041, 2149, 2336, 2369
BceAI ACGGC 1 cut(s) 993
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
BclI TGATCA 3 cut(s) 202, 240, 1984
BcoDI GTCTC 5 cut(s) 218, 538, 1057, 2174, 2806
BfmI CTRYAG 4 cut(s) 792, 1475, 1487, 1920
BfoI RGCGCY 2 cut(s) 563, 2244
BfrI CTTAAG 2 cut(s) 1496, 2057
BfuAI ACCTGC 2 cut(s) 77, 2569
BglI GCCNNNNNGGC 4 cut(s) 47, 56, 65, 83
BisI GCNGC 7 cut(s) 483, 716, 1359, 1835, 1917, 2252, 2618
BlnI CCTAGG 1 cut(s) 2132
BlsI GCNGC 7 cut(s) 484, 717, 1360, 1836, 1918, 2253, 2619
Bme1390I CCNGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
Bme18I GGWCC 3 cut(s) 1242, 1695, 2722
BmgBI CACGTC 1 cut(s) 1069
BmgT120I GGNCC 9 cut(s) 39, 48, 57, 93, 304, 331, 1242, 1695, 2722
BmiI GGNNCC 8 cut(s) 6, 49, 94, 114, 305, 610, 1131, 1599
BmrFI CCNGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
BmrI ACTGGG 1 cut(s) 1745
BmsI GCATC 8 cut(s) 255, 361, 772, 1821, 2104, 2216, 2602, 2767
BmtI GCTAGC 2 cut(s) 566, 1916
BmuI ACTGGG 1 cut(s) 1745
BpiI GAAGAC 2 cut(s) 1292, 1736
BplI GAGNNNNNCTC 2 cut(s) 1078, 1110
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 878
Bpu14I TTCGAA 1 cut(s) 1971
BpuEI CTTGAG 1 cut(s) 272
Bsa29I ATCGAT 2 cut(s) 1122, 2455
BsaAI YACGTR 2 cut(s) 246, 2306
BsaHI GRCGYC 1 cut(s) 713
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 9 cut(s) 1026, 1085, 2089, 2090, 2132, 2233, 2278, 2476, 2477
BsaWI WCCGGW 5 cut(s) 420, 441, 1016, 1144, 1244
BsaXI ACNNNNNCTCC 4 cut(s) 1493, 1523, 1604, 1634
Bsc4I CCNNNNNNNGG 8 cut(s) 14, 427, 517, 521, 1261, 1756, 1772, 2446
Bse118I RCCGGY 3 cut(s) 50, 441, 1144
Bse1I ACTGG 4 cut(s) 1255, 1751, 1777, 2677
Bse21I CCTNAGG 1 cut(s) 516
BseAI TCCGGA 1 cut(s) 420
BseBI CCWGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
BseCI ATCGAT 2 cut(s) 1122, 2455
BseDI CCNNGG 9 cut(s) 1026, 1085, 2089, 2090, 2132, 2233, 2278, 2476, 2477
BseLI CCNNNNNNNGG 8 cut(s) 14, 427, 517, 521, 1261, 1756, 1772, 2446
BseMII CTCAG 7 cut(s) 356, 530, 696, 1047, 1229, 2027, 2181
BseNI ACTGG 4 cut(s) 1255, 1751, 1777, 2677
BseRI GAGGAG 4 cut(s) 152, 155, 1286, 1736
BseSI GKGCMC 3 cut(s) 478, 773, 2475
BseXI GCAGC 5 cut(s) 494, 1345, 1846, 2263, 2629
BseYI CCCAGC 1 cut(s) 766
BsgI GTGCAG 2 cut(s) 615, 2270
Bsh1236I CGCG 1 cut(s) 13
BshNI GGYRCC 2 cut(s) 608, 1129
BshTI ACCGGT 2 cut(s) 441, 1144
BshVI ATCGAT 2 cut(s) 1122, 2455
BsiHKAI GWGCWC 4 cut(s) 420, 2055, 2475, 2486
BsiSI CCGG 6 cut(s) 51, 421, 442, 1017, 1145, 1245
BslFI GGGAC 1 cut(s) 1620
BslI CCNNNNNNNGG 8 cut(s) 14, 427, 517, 521, 1261, 1756, 1772, 2446
BsmAI GTCTC 5 cut(s) 218, 538, 1057, 2174, 2806
BsmFI GGGAC 1 cut(s) 1620
BsmI GAATGC 2 cut(s) 1684, 2199
Bso31I GGTCTC 1 cut(s) 538
Bsp119I TTCGAA 1 cut(s) 1971
Bsp1286I GDGCHC 6 cut(s) 420, 478, 773, 2055, 2475, 2486
Bsp13I TCCGGA 1 cut(s) 420
BspCNI CTCAG 7 cut(s) 355, 529, 695, 1048, 1230, 2026, 2182
BspDI ATCGAT 2 cut(s) 1122, 2455
BspEI TCCGGA 1 cut(s) 420
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 3 cut(s) 1462, 1879, 1900
BspLI GGNNCC 8 cut(s) 6, 49, 94, 114, 305, 610, 1131, 1599
BspMI ACCTGC 2 cut(s) 77, 2569
BspOI GCTAGC 2 cut(s) 566, 1916
BspT104I TTCGAA 1 cut(s) 1971
BspT107I GGYRCC 2 cut(s) 608, 1129
BspTI CTTAAG 2 cut(s) 1496, 2057
BspTNI GGTCTC 1 cut(s) 538
BsrFI RCCGGY 3 cut(s) 50, 441, 1144
BsrI ACTGG 4 cut(s) 1255, 1751, 1777, 2677
BssAI RCCGGY 3 cut(s) 50, 441, 1144
BssECI CCNNGG 9 cut(s) 1026, 1085, 2089, 2090, 2132, 2233, 2278, 2476, 2477
BssNI GRCGYC 1 cut(s) 713
BssT1I CCWWGG 3 cut(s) 2132, 2233, 2278
Bst2UI CCWGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
Bst4CI ACNGT 5 cut(s) 905, 1027, 2470, 2726, 2773
Bst6I CTCTTC 1 cut(s) 1542
BstACI GRCGYC 1 cut(s) 713
BstAFI CTTAAG 2 cut(s) 1496, 2057
BstBAI YACGTR 2 cut(s) 246, 2306
BstBI TTCGAA 1 cut(s) 1971
BstC8I GCNNGC 5 cut(s) 487, 564, 633, 787, 1914
BstDSI CCRYGG 1 cut(s) 1026
BstEII GGTNACC 1 cut(s) 1089
BstENI CCTNNNNNAGG 2 cut(s) 12, 2444
BstFNI CGCG 1 cut(s) 13
BstH2I RGCGCY 2 cut(s) 563, 2244
BstHHI GCGC 3 cut(s) 166, 562, 2243
BstMAI GTCTC 5 cut(s) 218, 538, 1057, 2174, 2806
BstNI CCWGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
BstPI GGTNACC 1 cut(s) 1089
BstSCI CCNGG 6 cut(s) 934, 1074, 1132, 2089, 2476, 2602
BstSFI CTRYAG 4 cut(s) 792, 1475, 1487, 1920
BstSLI GKGCMC 3 cut(s) 478, 773, 2475
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 5 cut(s) 494, 1345, 1846, 2263, 2629
BstV2I GAAGAC 2 cut(s) 1292, 1736
BstX2I RGATCY 6 cut(s) 4, 725, 1597, 1653, 2226, 2436
BstXI CCANNNNNNTGG 3 cut(s) 935, 1453, 2107
BstYI RGATCY 6 cut(s) 4, 725, 1597, 1653, 2226, 2436
Bsu15I ATCGAT 2 cut(s) 1122, 2455
Bsu36I CCTNAGG 1 cut(s) 516
BsuTUI ATCGAT 2 cut(s) 1122, 2455
BtgI CCRYGG 1 cut(s) 1026
BtrI CACGTC 1 cut(s) 1069
BtsIMutI CAGTG 3 cut(s) 690, 1396, 1758
BveI ACCTGC 2 cut(s) 77, 2569
Cac8I GCNNGC 5 cut(s) 487, 564, 633, 787, 1914
CciI TCATGA 3 cut(s) 1462, 1879, 1900
CfoI GCGC 3 cut(s) 166, 562, 2243
Cfr10I RCCGGY 3 cut(s) 50, 441, 1144
Cfr13I GGNCC 9 cut(s) 39, 48, 57, 93, 304, 331, 1242, 1695, 2722
ClaI ATCGAT 2 cut(s) 1122, 2455
CseI GACGC 2 cut(s) 721, 1808
CsiI ACCWGGT 1 cut(s) 1132
Csp6I GTAC 8 cut(s) 183, 249, 609, 1023, 1130, 1137, 1484, 2767
CspAI ACCGGT 2 cut(s) 441, 1144
CspCI CAANNNNNGTGG 2 cut(s) 2024, 2059
CviQI GTAC 8 cut(s) 183, 249, 609, 1023, 1130, 1137, 1484, 2767
DraIII CACNNNGTG 1 cut(s) 777
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 1542
EarI CTCTTC 1 cut(s) 1542
EciI GGCGGA 3 cut(s) 2126, 2333, 2603
Ecl136II GAGCTC 2 cut(s) 418, 2053
Eco130I CCWWGG 3 cut(s) 2132, 2233, 2278
Eco24I GRGCYC 2 cut(s) 420, 2055
Eco31I GGTCTC 1 cut(s) 538
Eco47I GGWCC 3 cut(s) 1242, 1695, 2722
Eco47III AGCGCT 1 cut(s) 561
Eco53kI GAGCTC 2 cut(s) 418, 2053
Eco57I CTGAAG 1 cut(s) 1169
Eco72I CACGTG 2 cut(s) 246, 2306
Eco81I CCTNAGG 1 cut(s) 516
Eco91I GGTNACC 1 cut(s) 1089
EcoICRI GAGCTC 2 cut(s) 418, 2053
EcoNI CCTNNNNNAGG 2 cut(s) 12, 2444
EcoO109I RGGNCCY 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 1089
EcoRII CCWGG 6 cut(s) 934, 1074, 1132, 2089, 2476, 2602
EcoT14I CCWWGG 3 cut(s) 2132, 2233, 2278
EcoT22I ATGCAT 1 cut(s) 2119
EcoT38I GRGCYC 2 cut(s) 420, 2055
ErhI CCWWGG 3 cut(s) 2132, 2233, 2278
FaqI GGGAC 1 cut(s) 1620
FauNDI CATATG 1 cut(s) 1855
FbaI TGATCA 3 cut(s) 202, 240, 1984
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 7 cut(s) 483, 716, 1359, 1835, 1917, 2252, 2618
FriOI GRGCYC 2 cut(s) 420, 2055
Fsp4HI GCNGC 7 cut(s) 483, 716, 1359, 1835, 1917, 2252, 2618
GlaI GCGC 3 cut(s) 165, 561, 2242
GluI GCNGC 7 cut(s) 483, 716, 1359, 1835, 1917, 2252, 2618
GsaI CCCAGC 1 cut(s) 770
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 2 cut(s) 563, 2244
HapII CCGG 6 cut(s) 51, 421, 442, 1017, 1145, 1245
HgaI GACGC 2 cut(s) 721, 1808
HhaI GCGC 3 cut(s) 166, 562, 2243
Hin1I GRCGYC 1 cut(s) 713
Hin6I GCGC 3 cut(s) 164, 560, 2241
HinP1I GCGC 3 cut(s) 164, 560, 2241
HincII GTYRAC 1 cut(s) 1740
HindII GTYRAC 1 cut(s) 1740
HinfI GANTC 5 cut(s) 706, 835, 1081, 1156, 1630
HpaII CCGG 6 cut(s) 51, 421, 442, 1017, 1145, 1245
HphI GGTGA 9 cut(s) 226, 442, 700, 1134, 1244, 1276, 2078, 2593, 2725
Hpy166II GTNNAC 8 cut(s) 249, 379, 1695, 1740, 2332, 2473, 2722, 2769
Hpy8I GTNNAC 8 cut(s) 249, 379, 1695, 1740, 2332, 2473, 2722, 2769
Hpy99I CGWCG 2 cut(s) 715, 1802
HpyCH4III ACNGT 5 cut(s) 905, 1027, 2470, 2726, 2773
HpyCH4IV ACGT 3 cut(s) 245, 1068, 2305
HpySE526I ACGT 3 cut(s) 245, 1068, 2305
Hsp92I GRCGYC 1 cut(s) 713
HspAI GCGC 3 cut(s) 164, 560, 2241
Kpn2I TCCGGA 1 cut(s) 420
KpnI GGTACC 2 cut(s) 612, 1133
Ksp22I TGATCA 3 cut(s) 202, 240, 1984
LmnI GCTCC 7 cut(s) 423, 2050, 2058, 2218, 2481, 2590, 2647
Lsp1109I GCAGC 5 cut(s) 494, 1345, 1846, 2263, 2629
LweI GCATC 8 cut(s) 255, 361, 772, 1821, 2104, 2216, 2602, 2767
MabI ACCWGGT 1 cut(s) 1132
MaeII ACGT 3 cut(s) 245, 1068, 2305
MaeIII GTNAC 4 cut(s) 430, 1064, 1089, 2668
MflI RGATCY 6 cut(s) 4, 725, 1597, 1653, 2226, 2436
MhlI GDGCHC 6 cut(s) 420, 478, 773, 2055, 2475, 2486
MluCI AATT 2 cut(s) 1624, 1888
MlyI GAGTC 3 cut(s) 700, 1150, 1639
MmeI TCCRAC 7 cut(s) 734, 951, 1575, 1919, 2157, 2319, 2347
Mph1103I ATGCAT 1 cut(s) 2119
MroI TCCGGA 1 cut(s) 420
MseI TTAA 3 cut(s) 1497, 2058, 2842
MslI CAYNNNNRTG 2 cut(s) 849, 980
MspA1I CMGCKG 2 cut(s) 346, 1919
MspCI CTTAAG 2 cut(s) 1496, 2057
MspI CCGG 6 cut(s) 51, 421, 442, 1017, 1145, 1245
MspR9I CCNGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
Mva1269I GAATGC 2 cut(s) 1684, 2199
MvaI CCWGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
MvnI CGCG 1 cut(s) 13
NdeI CATATG 1 cut(s) 1855
NheI GCTAGC 2 cut(s) 562, 1912
NlaIV GGNNCC 8 cut(s) 6, 49, 94, 114, 305, 610, 1131, 1599
NmeAIII GCCGAG 1 cut(s) 969
NmuCI GTSAC 3 cut(s) 430, 1064, 2668
NsiI ATGCAT 1 cut(s) 2119
NspV TTCGAA 1 cut(s) 1971
PagI TCATGA 3 cut(s) 1462, 1879, 1900
PaqCI CACCTGC 2 cut(s) 77, 2569
PasI CCCWGGG 2 cut(s) 2090, 2477
PctI GAATGC 2 cut(s) 1684, 2199
PfeI GAWTC 2 cut(s) 835, 1081
PflFI GACNNNGTC 1 cut(s) 2734
PfoI TCCNGGA 2 cut(s) 934, 1074
PinAI ACCGGT 2 cut(s) 441, 1144
PkrI GCNGC 7 cut(s) 484, 717, 1360, 1836, 1918, 2253, 2619
PleI GAGTC 3 cut(s) 700, 1150, 1638
PmaCI CACGTG 2 cut(s) 246, 2306
PmlI CACGTG 2 cut(s) 246, 2306
PpsI GAGTC 3 cut(s) 700, 1150, 1638
Ppu21I YACGTR 2 cut(s) 246, 2306
Psp124BI GAGCTC 2 cut(s) 420, 2055
Psp6I CCWGG 6 cut(s) 934, 1074, 1132, 2089, 2476, 2602
PspCI CACGTG 2 cut(s) 246, 2306
PspEI GGTNACC 1 cut(s) 1089
PspFI CCCAGC 1 cut(s) 766
PspGI CCWGG 6 cut(s) 934, 1074, 1132, 2089, 2476, 2602
PspN4I GGNNCC 8 cut(s) 6, 49, 94, 114, 305, 610, 1131, 1599
PspPI GGNCC 9 cut(s) 39, 48, 57, 93, 304, 331, 1242, 1695, 2722
PsrI GAACNNNNNNTAC 2 cut(s) 1476, 1508
PsuI RGATCY 6 cut(s) 4, 725, 1597, 1653, 2226, 2436
PsyI GACNNNGTC 1 cut(s) 2734
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 8 cut(s) 184, 250, 610, 1024, 1131, 1138, 1485, 2768
RsaNI GTAC 8 cut(s) 183, 249, 609, 1023, 1130, 1137, 1484, 2767
RseI CAYNNNNRTG 2 cut(s) 849, 980
SacI GAGCTC 2 cut(s) 420, 2055
SaqAI TTAA 3 cut(s) 1497, 2058, 2842
SatI GCNGC 7 cut(s) 483, 716, 1359, 1835, 1917, 2252, 2618
Sau96I GGNCC 9 cut(s) 39, 48, 57, 93, 304, 331, 1242, 1695, 2722
SchI GAGTC 3 cut(s) 700, 1150, 1639
ScrFI CCNGG 6 cut(s) 936, 1076, 1134, 2091, 2478, 2604
SduI GDGCHC 6 cut(s) 420, 478, 773, 2055, 2475, 2486
SexAI ACCWGGT 1 cut(s) 1132
SfaNI GCATC 8 cut(s) 255, 361, 772, 1821, 2104, 2216, 2602, 2767
SfcI CTRYAG 4 cut(s) 792, 1475, 1487, 1920
SfiI GGCCNNNNNGGCC 2 cut(s) 47, 56
SfuI TTCGAA 1 cut(s) 1971
SgrAI CRCCGGYG 1 cut(s) 1144
SinI GGWCC 3 cut(s) 1242, 1695, 2722
SmiMI CAYNNNNRTG 2 cut(s) 849, 980
SmlI CTYRAG 3 cut(s) 287, 1496, 2057
SmoI CTYRAG 3 cut(s) 287, 1496, 2057
Sse9I AATT 2 cut(s) 1624, 1888
SstI GAGCTC 2 cut(s) 420, 2055
StyD4I CCNGG 6 cut(s) 934, 1074, 1132, 2089, 2476, 2602
StyI CCWWGG 3 cut(s) 2132, 2233, 2278
TaaI ACNGT 5 cut(s) 905, 1027, 2470, 2726, 2773
TaiI ACGT 3 cut(s) 248, 1071, 2308
TaqI TCGA 6 cut(s) 258, 1122, 1971, 2455, 2759, 2834
TaqII GACCGA 1 cut(s) 1712
TasI AATT 2 cut(s) 1624, 1888
TauI GCSGC 2 cut(s) 718, 1919
TfiI GAWTC 2 cut(s) 835, 1081
Tru1I TTAA 3 cut(s) 1497, 2058, 2842
Tru9I TTAA 3 cut(s) 1497, 2058, 2842
TscAI CASTG 3 cut(s) 690, 1396, 1758
TseFI GTSAC 3 cut(s) 430, 1064, 2668
TseI GCWGC 5 cut(s) 482, 1358, 1834, 2251, 2617
Tsp45I GTSAC 3 cut(s) 430, 1064, 2668
TspDTI ATGAA 6 cut(s) 385, 661, 1391, 1868, 2546, 2807
TspGWI ACGGA 5 cut(s) 266, 628, 1052, 1646, 1664
TspRI CASTG 3 cut(s) 690, 1396, 1758
Tth111I GACNNNGTC 1 cut(s) 2734
Vha464I CTTAAG 2 cut(s) 1496, 2057
VneI GTGCAC 1 cut(s) 2471
VpaK11BI GGWCC 3 cut(s) 1242, 1695, 2722
XagI CCTNNNNNAGG 2 cut(s) 12, 2444
XbaI TCTAGA 1 cut(s) 1301
XmaJI CCTAGG 1 cut(s) 2132
XmiI GTMKAC 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 2119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.