Rw1G009140

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000094
Physical Location & Seq
Reverse (-)
20133859 .. 20135166
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009140.1

Sequence Viewer

Length: 1308 bp
ATGAGCGTCAGAGACTATGAGGCACGGTTCTCCCAGTTGTATCGGTTCGTTCCGCAGATGGACGCAGAGTCTCTGGCCAAGAAGTTTCTGCGGGGACTGAAGCATAGGATCAGGGAGATTGTGTACCCCCTTATGCTGCCTACGAAGGCAGCCATCTTTGCTAGTGCTATGGCCCATGAGCAGGAGGCCAAGATGCATGAGAGTGAGACCTTGGCTTCGAGAGATTCCCAGGGAAAGGGGAAGGCGGTTGCCTGGAGCAGTAGTTCTACGGGTTATCGAGGCGGGTCTTGGAAGAGACAGCGGACTCATCATCAGGCTCTAGCTAGAGTGGCAGCTGCACCTGTTAGGGCTGCACCTATCAGGCAGGTAGCACCTGCTGCACCTCTGACATGTTACAACTGCGGTGAGGTTGGACATGTTTCCAGAGCTTGCACGAGGCCGAAGAGTAAGACATGCTATAGATGTGGACTGGCAGGACATTTCGCCAGAGAGTGTACCCGACCACAGGATGGTGGACAGAGGATCCAGCAGAGGCAGTTGCCTCCAGGTCAGGCTAGGGTATTCGCTATCGGTCAGCGAGGTACAGGAGTGGAAGGTACCTTATCTGTTTTCAACTACCTTGCTAGGGTATTGTTTGATACGGGAGCATCTCATTCTTTCATATCTAGTTCTGTGGTAGAGGTGTTGGATTTGACTGCTATGCCTCTTGCTAGATCTTTGTGTGTTACATCGCCTCTCGGTGTTTCTCTTGAGCTTAGTATGTTTTGTGATGCATGCCCTATTGTGATATGTGGTAGAGAGTTCTCTGCAGCTTTGATTGTGATTCCGGACCACACATATGATGTGATCTTGGGTATTGATTGGTTGAGGCCGAACCATGCTAAGATTGACTGTTTTGAGATGGTAGTGTCCTTCCATATCCCTGGACAGCCTGTGTTTCATTACAGGTGTCTGAGATCTGATACGGCTATGAGGGCGGGAGTATTAGCACATATAGAGTCAGTGTGTAGTGCTTCAGTTATTATAGATATTCCTGTTGTTTTAGAGTATATTGATGTGTTCCAGGAGATACCGAGGTTACCTCCGAGGAGGGTGGTAGAATTTTCTATCGATGTGATACCAGGTACTACACCTGTATCAATGGCACCTCATCGGATGGCACCAGCTGAACTTCAGGAGTTGAAGGTTCAGATTGAGGGTTTACTTGAGCAGGGGTTCATTAGACCCAGTATTTCTCCCTGGGGCGCACCAGTATTGTTTGCGAAGAAGAAGGATGGTTCACTCCGTTTGTGTGTGGATTATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 zf-CCHC

Protein Analysis

435

Amino Acids

48.01

Weight (kDa)

9.12

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 130 - 145 9.6e-07 Zinc knuckle
RVP_2 PF08284 197 - 305 9.4e-31 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
Acc36I ACCTGC 2 cut(s) 355, 382
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 3 cut(s) 596, 1144, 1159
AccB7I CCANNNNNTGG 1 cut(s) 509
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 7 cut(s) 53, 91, 245, 282, 301, 402, 977
AclWI GGATC 3 cut(s) 116, 517, 530
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 1100
AcuI CTGAAG 3 cut(s) 119, 999, 1157
AfaI GTAC 5 cut(s) 125, 496, 583, 598, 1126
AfiI CCNNNNNNNGG 5 cut(s) 181, 235, 505, 509, 625
AflIII ACRYGT 2 cut(s) 389, 415
AgsI TTSAA 2 cut(s) 613, 1183
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 7 cut(s) 228, 251, 544, 922, 1062, 1120, 1238
AloI GAACNNNNNNTCC 2 cut(s) 247, 279
AluBI AGCT 6 cut(s) 323, 335, 428, 754, 812, 1166
AluI AGCT 6 cut(s) 323, 335, 428, 754, 812, 1166
Alw26I GTCTC 4 cut(s) 6, 75, 200, 289
AlwI GGATC 3 cut(s) 116, 517, 530
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 5 cut(s) 75, 171, 186, 437, 869
ApeKI GCWGC 7 cut(s) 136, 149, 332, 335, 350, 377, 809
ApoI RAATTY 1 cut(s) 1100
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
Asp718I GGTACC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 1247
AspS9I GGNCC 2 cut(s) 172, 829
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 829
BaeI ACNNNNGTAYC 6 cut(s) 573, 606, 1061, 1094, 1119, 1152
BalI TGGCCA 1 cut(s) 77
BamHI GGATCC 1 cut(s) 522
BanI GGYRCC 3 cut(s) 596, 1144, 1159
BauI CACGAG 1 cut(s) 433
BbvI GCAGC 7 cut(s) 123, 161, 322, 337, 344, 364, 821
BccI CCATC 6 cut(s) 52, 161, 503, 895, 1150, 1268
BceAI ACGGC 1 cut(s) 981
BciT130I CCWGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
BcoDI GTCTC 4 cut(s) 6, 75, 200, 289
BfaI CTAG 7 cut(s) 162, 320, 324, 555, 624, 666, 711
BfmI CTRYAG 2 cut(s) 457, 807
BfuAI ACCTGC 2 cut(s) 355, 382
BglII AGATCT 2 cut(s) 713, 956
BisI GCNGC 7 cut(s) 137, 150, 333, 336, 351, 378, 810
BlsI GCNGC 7 cut(s) 138, 151, 334, 337, 352, 379, 811
Bme1390I CCNGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
Bme18I GGWCC 1 cut(s) 829
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 172, 829
BmiI GGNNCC 4 cut(s) 524, 598, 1146, 1161
BmrFI CCNGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
BmrI ACTGGG 2 cut(s) 28, 1221
BmsI GCATC 3 cut(s) 183, 656, 760
BmuI ACTGGG 2 cut(s) 28, 1221
BplI GAGNNNNNCTC 2 cut(s) 1066, 1098
BpmI CTGGAG 2 cut(s) 274, 528
BpuEI CTTGAG 2 cut(s) 770, 1226
Bsa29I ATCGAT 1 cut(s) 1110
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 8 cut(s) 210, 228, 229, 922, 1073, 1085, 1238, 1239
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 247, 277
Bsc4I CCNNNNNNNGG 5 cut(s) 181, 235, 505, 509, 625
Bse1I ACTGG 4 cut(s) 34, 474, 1227, 1250
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
BseCI ATCGAT 1 cut(s) 1110
BseDI CCNNGG 8 cut(s) 210, 228, 229, 922, 1073, 1085, 1238, 1239
BseGI GGATG 3 cut(s) 514, 1161, 1279
BseLI CCNNNNNNNGG 5 cut(s) 181, 235, 505, 509, 625
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 4 cut(s) 34, 474, 1227, 1250
BseRI GAGGAG 1 cut(s) 1102
BseXI GCAGC 7 cut(s) 123, 161, 322, 337, 344, 364, 821
BsgI GTGCAG 3 cut(s) 321, 336, 363
BshFI GGCC 5 cut(s) 77, 173, 188, 439, 871
BshNI GGYRCC 3 cut(s) 596, 1144, 1159
BshVI ATCGAT 1 cut(s) 1110
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 5 cut(s) 181, 235, 505, 509, 625
BsmAI GTCTC 4 cut(s) 6, 75, 200, 289
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 5 cut(s) 77, 173, 188, 439, 871
Bso31I GGTCTC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 5 cut(s) 108, 522, 713, 846, 956
BspACI CCGC 7 cut(s) 53, 91, 245, 282, 301, 402, 977
BspANI GGCC 5 cut(s) 77, 173, 188, 439, 871
BspCNI CTCAG 1 cut(s) 945
BspDI ATCGAT 1 cut(s) 1110
BspEI TCCGGA 1 cut(s) 826
BspLI GGNNCC 4 cut(s) 524, 598, 1146, 1161
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 2 cut(s) 355, 382
BspPI GGATC 3 cut(s) 116, 517, 530
BspT107I GGYRCC 3 cut(s) 596, 1144, 1159
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 4 cut(s) 34, 474, 1227, 1250
BssECI CCNNGG 8 cut(s) 210, 228, 229, 922, 1073, 1085, 1238, 1239
BssMI GATC 5 cut(s) 108, 522, 713, 846, 956
BssSI CACGAG 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 433
Bst2UI CCWGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
Bst4CI ACNGT 2 cut(s) 27, 893
Bst6I CTCTTC 2 cut(s) 287, 437
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 430, 775
BstDEI CTNAG 3 cut(s) 755, 882, 953
BstEII GGTNACC 1 cut(s) 1077
BstF5I GGATG 3 cut(s) 514, 1161, 1279
BstHHI GCGC 1 cut(s) 1247
BstKTI GATC 5 cut(s) 111, 525, 716, 849, 959
BstMAI GTCTC 4 cut(s) 6, 75, 200, 289
BstMBI GATC 5 cut(s) 108, 522, 713, 846, 956
BstMWI GCNNNNNNNGC 4 cut(s) 158, 329, 377, 974
BstNI CCWGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
BstNSI RCATGY 4 cut(s) 393, 419, 456, 777
BstPI GGTNACC 1 cut(s) 1077
BstSCI CCNGG 7 cut(s) 228, 251, 544, 922, 1062, 1120, 1238
BstSFI CTRYAG 2 cut(s) 457, 807
BstV1I GCAGC 7 cut(s) 123, 161, 322, 337, 344, 364, 821
BstX2I RGATCY 3 cut(s) 522, 713, 956
BstXI CCANNNNNNTGG 1 cut(s) 923
BstYI RGATCY 3 cut(s) 522, 713, 956
Bsu15I ATCGAT 1 cut(s) 1110
BsuRI GGCC 5 cut(s) 77, 173, 188, 439, 871
BsuTUI ATCGAT 1 cut(s) 1110
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 3 cut(s) 514, 1161, 1279
BtsIMutI CAGTG 1 cut(s) 1008
BveI ACCTGC 2 cut(s) 355, 382
Cac8I GCNNGC 2 cut(s) 430, 775
CfoI GCGC 1 cut(s) 1247
Cfr13I GGNCC 2 cut(s) 172, 829
ClaI ATCGAT 1 cut(s) 1110
CseI GACGC 1 cut(s) 71
CsiI ACCWGGT 1 cut(s) 1120
Csp6I GTAC 5 cut(s) 124, 495, 582, 597, 1125
CviAII CATG 7 cut(s) 176, 197, 390, 416, 453, 774, 878
CviQI GTAC 5 cut(s) 124, 495, 582, 597, 1125
DdeI CTNAG 3 cut(s) 755, 882, 953
DpnI GATC 5 cut(s) 110, 524, 715, 848, 958
DpnII GATC 5 cut(s) 108, 522, 713, 846, 956
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 287, 437
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 2 cut(s) 287, 437
Eco130I CCWWGG 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 829
Eco57I CTGAAG 3 cut(s) 119, 999, 1157
Eco91I GGTNACC 1 cut(s) 1077
EcoO65I GGTNACC 1 cut(s) 1077
EcoRII CCWGG 7 cut(s) 228, 251, 544, 922, 1062, 1120, 1238
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 2 cut(s) 198, 775
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 7 cut(s) 179, 200, 393, 419, 456, 777, 881
FaqI GGGAC 1 cut(s) 108
FatI CATG 7 cut(s) 175, 196, 389, 415, 452, 773, 877
FauI CCCGC 3 cut(s) 84, 275, 970
FauNDI CATATG 1 cut(s) 838
Fnu4HI GCNGC 7 cut(s) 137, 150, 333, 336, 351, 378, 810
FokI GGATG 3 cut(s) 521, 1168, 1286
Fsp4HI GCNGC 7 cut(s) 137, 150, 333, 336, 351, 378, 810
FspBI CTAG 7 cut(s) 162, 320, 324, 555, 624, 666, 711
GlaI GCGC 1 cut(s) 1246
GluI GCNGC 7 cut(s) 137, 150, 333, 336, 351, 378, 810
GsuI CTGGAG 2 cut(s) 274, 528
HaeIII GGCC 5 cut(s) 77, 173, 188, 439, 871
HapII CCGG 1 cut(s) 827
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 1247
Hin1II CATG 7 cut(s) 179, 200, 393, 419, 456, 777, 881
Hin6I GCGC 1 cut(s) 1245
HinP1I GCGC 1 cut(s) 1245
HinfI GANTC 5 cut(s) 68, 224, 304, 823, 998
HpaII CCGG 1 cut(s) 827
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 6 cut(s) 124, 467, 495, 515, 1202, 1280
Hpy188I TCNGA 7 cut(s) 11, 387, 954, 961, 1086, 1155, 1191
Hpy188III TCNNGA 5 cut(s) 219, 423, 749, 827, 1175
Hpy8I GTNNAC 6 cut(s) 124, 467, 495, 515, 1202, 1280
HpyAV CCTTC 6 cut(s) 139, 235, 587, 922, 1177, 1264
HpyCH4III ACNGT 2 cut(s) 27, 893
HpyCH4V TGCA 7 cut(s) 196, 338, 353, 380, 432, 773, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 329, 377, 974
HpyF3I CTNAG 3 cut(s) 755, 882, 953
Hsp92II CATG 7 cut(s) 179, 200, 393, 419, 456, 777, 881
HspAI GCGC 1 cut(s) 1245
Kpn2I TCCGGA 1 cut(s) 826
KpnI GGTACC 1 cut(s) 600
Kzo9I GATC 5 cut(s) 108, 522, 713, 846, 956
LmnI GCTCC 2 cut(s) 255, 644
Lsp1109I GCAGC 7 cut(s) 123, 161, 322, 337, 344, 364, 821
LweI GCATC 3 cut(s) 183, 656, 760
MabI ACCWGGT 1 cut(s) 1120
MaeI CTAG 7 cut(s) 162, 320, 324, 555, 624, 666, 711
MaeIII GTNAC 3 cut(s) 392, 724, 1077
MalI GATC 5 cut(s) 110, 524, 715, 848, 958
MboI GATC 5 cut(s) 108, 522, 713, 846, 956
MboII GAAGA 4 cut(s) 304, 454, 1276, 1279
MflI RGATCY 3 cut(s) 522, 713, 956
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 1 cut(s) 1100
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 3 cut(s) 77, 298, 1007
MmeI TCCRAC 2 cut(s) 391, 666
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 2 cut(s) 198, 775
MroI TCCGGA 1 cut(s) 826
MscI TGGCCA 1 cut(s) 77
MslI CAYNNNNRTG 2 cut(s) 201, 837
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 3 cut(s) 301, 335, 1166
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
MvaI CCWGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
MwoI GCNNNNNNNGC 4 cut(s) 158, 329, 377, 974
NdeI CATATG 1 cut(s) 838
NdeII GATC 5 cut(s) 108, 522, 713, 846, 956
NlaIII CATG 7 cut(s) 179, 200, 393, 419, 456, 777, 881
NlaIV GGNNCC 4 cut(s) 524, 598, 1146, 1161
NsiI ATGCAT 2 cut(s) 198, 775
NspI RCATGY 4 cut(s) 393, 419, 456, 777
PaeI GCATGC 1 cut(s) 777
PaqCI CACCTGC 1 cut(s) 382
PasI CCCWGGG 2 cut(s) 229, 1239
PciI ACATGT 2 cut(s) 389, 415
PfeI GAWTC 2 cut(s) 224, 823
PflMI CCANNNNNTGG 1 cut(s) 509
PfoI TCCNGGA 1 cut(s) 1062
PkrI GCNGC 7 cut(s) 138, 151, 334, 337, 352, 379, 811
PleI GAGTC 3 cut(s) 76, 298, 1006
PpsI GAGTC 3 cut(s) 76, 298, 1006
PscI ACATGT 2 cut(s) 389, 415
Psp6I CCWGG 7 cut(s) 228, 251, 544, 922, 1062, 1120, 1238
PspEI GGTNACC 1 cut(s) 1077
PspGI CCWGG 7 cut(s) 228, 251, 544, 922, 1062, 1120, 1238
PspN4I GGNNCC 4 cut(s) 524, 598, 1146, 1161
PspPI GGNCC 2 cut(s) 172, 829
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 3 cut(s) 522, 713, 956
PvuII CAGCTG 2 cut(s) 335, 1166
RsaI GTAC 5 cut(s) 125, 496, 583, 598, 1126
RsaNI GTAC 5 cut(s) 124, 495, 582, 597, 1125
RseI CAYNNNNRTG 2 cut(s) 201, 837
SatI GCNGC 7 cut(s) 137, 150, 333, 336, 351, 378, 810
Sau3AI GATC 5 cut(s) 108, 522, 713, 846, 956
Sau96I GGNCC 2 cut(s) 172, 829
SchI GAGTC 3 cut(s) 77, 298, 1007
ScrFI CCNGG 7 cut(s) 230, 253, 546, 924, 1064, 1122, 1240
SexAI ACCWGGT 1 cut(s) 1120
SfaNI GCATC 3 cut(s) 183, 656, 760
SfcI CTRYAG 2 cut(s) 457, 807
SinI GGWCC 1 cut(s) 829
SmiMI CAYNNNNRTG 2 cut(s) 201, 837
SmlI CTYRAG 2 cut(s) 749, 1205
SmoI CTYRAG 2 cut(s) 749, 1205
SphI GCATGC 1 cut(s) 777
Sse9I AATT 1 cut(s) 1100
SsiI CCGC 7 cut(s) 53, 91, 245, 282, 301, 402, 977
SspMI CTAG 7 cut(s) 162, 320, 324, 555, 624, 666, 711
StyD4I CCNGG 7 cut(s) 228, 251, 544, 922, 1062, 1120, 1238
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 27, 893
TaqI TCGA 3 cut(s) 218, 277, 1110
TaqII GACCGA 1 cut(s) 560
TasI AATT 1 cut(s) 1100
TfiI GAWTC 2 cut(s) 224, 823
TscAI CASTG 1 cut(s) 1008
TseI GCWGC 7 cut(s) 136, 149, 332, 335, 350, 377, 809
TspDTI ATGAA 3 cut(s) 649, 929, 1207
TspGWI ACGGA 1 cut(s) 1274
TspRI CASTG 1 cut(s) 1008
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 829
XapI RAATTY 1 cut(s) 1100
XceI RCATGY 4 cut(s) 393, 419, 456, 777
XspI CTAG 7 cut(s) 162, 320, 324, 555, 624, 666, 711
Zsp2I ATGCAT 2 cut(s) 198, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.