FvH4_7g07031

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000094
Physical Location & Seq
Forward (+)
7030463 .. 7032309
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07031.t1

Sequence Viewer

Length: 1704 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGAGAATATGCTGAGGGATGTTATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCTTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCAGGAATGTTGAGGATGCGCTGAATATGTCTTGGGAACAGTTTAAGACTCTTTTCTTGGGGCAATATTTCAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCAGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCTGTTCATGCAGCCATGGCCATTAAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGTCGGACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTACATGCTATGACCCAGCAGGAGGGTTGTACTTCTCCAGATGTTATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTCTGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTAGTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGCGCCTTTCAGAATGCCTCCAGCGGAATTGAAAGAGTTGAAGACTCAACTGCAGGAGTTGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

568

Amino Acids

61.83

Weight (kDa)

8.36

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 3.3e-15 Retrotransposon gag protein
RVP_2 PF08284 372 - 502 1.1e-33 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 802, 1111
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 3 cut(s) 12, 185, 1049
AccII CGCG 1 cut(s) 1122
AciI CCGC 4 cut(s) 726, 1087, 1569, 1659
AclWI GGATC 3 cut(s) 123, 772, 1217
AcoI YGGCCR 2 cut(s) 636, 668
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 3 cut(s) 714, 943, 1011
AcyI GRCGYC 3 cut(s) 13, 799, 1108
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 1159, 1183
AfiI CCNNNNNNNGG 3 cut(s) 695, 979, 1150
AgsI TTSAA 5 cut(s) 161, 181, 1484, 1667, 1676
AjnI CCWGG 3 cut(s) 291, 536, 1053
AluBI AGCT 9 cut(s) 122, 164, 236, 501, 713, 743, 1031, 1466, 1619
AluI AGCT 9 cut(s) 122, 164, 236, 501, 713, 743, 1031, 1466, 1619
Alw21I GWGCWC 3 cut(s) 124, 248, 667
Alw26I GTCTC 3 cut(s) 802, 1293, 1317
AlwI GGATC 3 cut(s) 123, 772, 1217
AoxI GGCC 2 cut(s) 636, 668
ApeKI GCWGC 7 cut(s) 414, 629, 835, 910, 913, 916, 1577
ApoI RAATTY 1 cut(s) 420
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 4 cut(s) 15, 349, 1124, 1640
AspS9I GGNCC 5 cut(s) 194, 534, 686, 698, 990
AsuC2I CCSGG 2 cut(s) 844, 1227
AsuHPI GGTGA 3 cut(s) 283, 1337, 1342
AsuII TTCGAA 1 cut(s) 1501
AvaII GGWCC 5 cut(s) 194, 534, 686, 698, 990
AvrII CCTAGG 1 cut(s) 8
BaeGI GKGCMC 2 cut(s) 562, 1054
BalI TGGCCA 1 cut(s) 638
BanI GGYRCC 3 cut(s) 12, 185, 1049
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 1482, 1514
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 2 cut(s) 1017, 1683
Bbv12I GWGCWC 3 cut(s) 124, 248, 667
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 7 cut(s) 426, 641, 847, 922, 925, 928, 1564
BccI CCATC 6 cut(s) 271, 417, 535, 709, 1288, 1505
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 293, 538, 1055
BciVI GTATCC 1 cut(s) 1624
BcnI CCSGG 2 cut(s) 844, 1227
BcoDI GTCTC 3 cut(s) 802, 1293, 1317
BfaI CTAG 7 cut(s) 9, 816, 1041, 1125, 1251, 1295, 1616
BfmI CTRYAG 1 cut(s) 1686
BfoI RGCGCY 2 cut(s) 16, 1641
BfuAI ACCTGC 1 cut(s) 820
BfuI GTATCC 1 cut(s) 1624
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 7 cut(s) 415, 630, 836, 911, 914, 917, 1578
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 7 cut(s) 416, 631, 837, 912, 915, 918, 1579
Bme1390I CCNGG 5 cut(s) 293, 538, 844, 1055, 1227
Bme18I GGWCC 5 cut(s) 194, 534, 686, 698, 990
BmgT120I GGNCC 5 cut(s) 194, 534, 686, 698, 990
BmrFI CCNGG 5 cut(s) 293, 538, 844, 1055, 1227
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 2 cut(s) 193, 334
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 2 cut(s) 1017, 1683
BplI GAGNNNNNCTC 2 cut(s) 979, 1011
BpmI CTGGAG 4 cut(s) 186, 1053, 1149, 1639
Bpu10I CCTNAGC 2 cut(s) 101, 497
Bpu14I TTCGAA 1 cut(s) 1501
BpuMI CCSGG 2 cut(s) 844, 1227
BsaHI GRCGYC 3 cut(s) 13, 799, 1108
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 8 cut(s) 8, 17, 189, 633, 871, 1053, 1054, 1531
Bsc4I CCNNNNNNNGG 3 cut(s) 695, 979, 1150
Bse1I ACTGG 4 cut(s) 81, 317, 690, 823
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 3 cut(s) 293, 538, 1055
BseDI CCNNGG 8 cut(s) 8, 17, 189, 633, 871, 1053, 1054, 1531
BseGI GGATG 8 cut(s) 112, 301, 349, 460, 546, 701, 722, 1280
BseLI CCNNNNNNNGG 3 cut(s) 695, 979, 1150
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 5 cut(s) 92, 488, 998, 1022, 1097
BseNI ACTGG 4 cut(s) 81, 317, 690, 823
BseSI GKGCMC 2 cut(s) 562, 1054
BseXI GCAGC 7 cut(s) 426, 641, 847, 922, 925, 928, 1564
BseYI CCCAGC 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 1122
BshFI GGCC 2 cut(s) 638, 670
BshNI GGYRCC 3 cut(s) 12, 185, 1049
BsiHKAI GWGCWC 3 cut(s) 124, 248, 667
BsiSI CCGG 2 cut(s) 843, 1227
BslFI GGGAC 5 cut(s) 87, 207, 672, 892, 1095
BslI CCNNNNNNNGG 3 cut(s) 695, 979, 1150
BsmAI GTCTC 3 cut(s) 802, 1293, 1317
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 5 cut(s) 87, 207, 672, 892, 1095
BsmI GAATGC 2 cut(s) 1237, 1654
BsnI GGCC 2 cut(s) 638, 670
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 1501
Bsp1286I GDGCHC 5 cut(s) 124, 248, 562, 667, 1054
Bsp143I GATC 4 cut(s) 115, 764, 1222, 1431
Bsp19I CCATGG 2 cut(s) 633, 871
BspACI CCGC 4 cut(s) 726, 1087, 1569, 1659
BspANI GGCC 2 cut(s) 638, 670
BspCNI CTCAG 5 cut(s) 93, 489, 997, 1021, 1096
BspFNI CGCG 1 cut(s) 1122
BspHI TCATGA 1 cut(s) 949
BspMAI CTGCAG 1 cut(s) 1690
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 3 cut(s) 123, 772, 1217
BspT104I TTCGAA 1 cut(s) 1501
BspT107I GGYRCC 3 cut(s) 12, 185, 1049
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 4 cut(s) 81, 317, 690, 823
BssECI CCNNGG 8 cut(s) 8, 17, 189, 633, 871, 1053, 1054, 1531
BssMI GATC 4 cut(s) 115, 764, 1222, 1431
BssNI GRCGYC 3 cut(s) 13, 799, 1108
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 5 cut(s) 8, 189, 633, 871, 1531
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 3 cut(s) 293, 538, 1055
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 2 cut(s) 443, 1296
BstACI GRCGYC 3 cut(s) 13, 799, 1108
BstBI TTCGAA 1 cut(s) 1501
BstC8I GCNNGC 3 cut(s) 324, 328, 1206
BstDEI CTNAG 5 cut(s) 101, 497, 984, 1008, 1083
BstDSI CCRYGG 3 cut(s) 17, 633, 871
BstF5I GGATG 8 cut(s) 112, 301, 349, 460, 546, 701, 722, 1280
BstFNI CGCG 1 cut(s) 1122
BstH2I RGCGCY 2 cut(s) 16, 1641
BstHHI GCGC 4 cut(s) 15, 349, 1124, 1640
BstKTI GATC 4 cut(s) 118, 767, 1225, 1434
BstMAI GTCTC 3 cut(s) 802, 1293, 1317
BstMBI GATC 4 cut(s) 115, 764, 1222, 1431
BstNI CCWGG 3 cut(s) 293, 538, 1055
BstNSI RCATGY 2 cut(s) 1136, 1310
BstSCI CCNGG 5 cut(s) 291, 536, 842, 1053, 1225
BstSFI CTRYAG 1 cut(s) 1686
BstSLI GKGCMC 2 cut(s) 562, 1054
BstUI CGCG 1 cut(s) 1122
BstV1I GCAGC 7 cut(s) 426, 641, 847, 922, 925, 928, 1564
BstV2I GAAGAC 2 cut(s) 1017, 1683
BsuI GTATCC 1 cut(s) 1624
BsuRI GGCC 2 cut(s) 638, 670
BtgI CCRYGG 3 cut(s) 17, 633, 871
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 8 cut(s) 112, 301, 349, 460, 546, 701, 722, 1280
BtsI GCAGTG 1 cut(s) 1066
BtsIMutI CAGTG 2 cut(s) 310, 1066
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 3 cut(s) 324, 328, 1206
CciI TCATGA 1 cut(s) 949
CfoI GCGC 4 cut(s) 15, 349, 1124, 1640
Cfr13I GGNCC 5 cut(s) 194, 534, 686, 698, 990
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 1158, 1182
CviQI GTAC 2 cut(s) 1158, 1182
DdeI CTNAG 5 cut(s) 101, 497, 984, 1008, 1083
DinI GGCGCC 1 cut(s) 14
DpnI GATC 4 cut(s) 117, 766, 1224, 1433
DpnII GATC 4 cut(s) 115, 764, 1222, 1431
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 2 cut(s) 636, 668
Eam1104I CTCTTC 2 cut(s) 443, 1296
EarI CTCTTC 2 cut(s) 443, 1296
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 5 cut(s) 8, 189, 633, 871, 1531
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 5 cut(s) 194, 534, 686, 698, 990
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 3 cut(s) 714, 943, 1011
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 291, 536, 1053
EcoT14I CCWWGG 5 cut(s) 8, 189, 633, 871, 1531
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
ErhI CCWWGG 5 cut(s) 8, 189, 633, 871, 1531
Esp3I CGTCTC 1 cut(s) 1293
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 5 cut(s) 87, 207, 672, 892, 1095
FauI CCCGC 1 cut(s) 1080
Fnu4HI GCNGC 7 cut(s) 415, 630, 836, 911, 914, 917, 1578
FokI GGATG 8 cut(s) 119, 308, 356, 467, 553, 688, 709, 1267
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 7 cut(s) 415, 630, 836, 911, 914, 917, 1578
FspBI CTAG 7 cut(s) 9, 816, 1041, 1125, 1251, 1295, 1616
GlaI GCGC 4 cut(s) 14, 348, 1123, 1639
GluI GCNGC 7 cut(s) 415, 630, 836, 911, 914, 917, 1578
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 4 cut(s) 186, 1053, 1149, 1639
HaeII RGCGCY 2 cut(s) 16, 1641
HaeIII GGCC 2 cut(s) 638, 670
HapII CCGG 2 cut(s) 843, 1227
HgaI GACGC 1 cut(s) 626
HhaI GCGC 4 cut(s) 15, 349, 1124, 1640
Hin1I GRCGYC 3 cut(s) 13, 799, 1108
Hin6I GCGC 4 cut(s) 13, 347, 1122, 1638
HinP1I GCGC 4 cut(s) 13, 347, 1122, 1638
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 5 cut(s) 299, 376, 486, 1117, 1679
HpaII CCGG 2 cut(s) 843, 1227
HphI GGTGA 3 cut(s) 283, 1337, 1342
Hpy166II GTNNAC 2 cut(s) 220, 1106
Hpy188I TCNGA 6 cut(s) 430, 616, 894, 987, 1073, 1647
Hpy188III TCNNGA 6 cut(s) 436, 524, 950, 961, 1166, 1508
Hpy8I GTNNAC 2 cut(s) 220, 1106
HpyAV CCTTC 5 cut(s) 50, 262, 455, 786, 1370
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 3 cut(s) 799, 1108, 1184
HpyCH4V TGCA 5 cut(s) 578, 629, 1560, 1580, 1688
HpyF3I CTNAG 5 cut(s) 101, 497, 984, 1008, 1083
HpySE526I ACGT 3 cut(s) 799, 1108, 1184
Hsp92I GRCGYC 3 cut(s) 13, 799, 1108
HspAI GCGC 4 cut(s) 13, 347, 1122, 1638
KasI GGCGCC 1 cut(s) 12
KflI GGGWCCC 1 cut(s) 194
Kzo9I GATC 4 cut(s) 115, 764, 1222, 1431
LmnI GCTCC 4 cut(s) 127, 167, 819, 1229
Lsp1109I GCAGC 7 cut(s) 426, 641, 847, 922, 925, 928, 1564
LweI GCATC 2 cut(s) 193, 334
MaeI CTAG 7 cut(s) 9, 816, 1041, 1125, 1251, 1295, 1616
MaeII ACGT 3 cut(s) 799, 1108, 1184
MaeIII GTNAC 2 cut(s) 283, 800
MalI GATC 4 cut(s) 117, 766, 1224, 1433
MboI GATC 4 cut(s) 115, 764, 1222, 1431
MboII GAAGA 5 cut(s) 286, 460, 1017, 1283, 1688
MhlI GDGCHC 5 cut(s) 124, 248, 562, 667, 1054
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 8 cut(s) 420, 1218, 1342, 1384, 1401, 1563, 1586, 1662
MluNI TGGCCA 1 cut(s) 638
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 3 cut(s) 370, 1111, 1673
MmeI TCCRAC 1 cut(s) 872
Mox20I TGGCCA 1 cut(s) 638
MscI TGGCCA 1 cut(s) 638
MseI TTAA 5 cut(s) 372, 642, 1217, 1383, 1400
MslI CAYNNNNRTG 1 cut(s) 1272
Msp20I TGGCCA 1 cut(s) 638
MspA1I CMGCKG 5 cut(s) 743, 1031, 1087, 1571, 1659
MspI CCGG 2 cut(s) 843, 1227
MspR9I CCNGG 5 cut(s) 293, 538, 844, 1055, 1227
Mva1269I GAATGC 2 cut(s) 1237, 1654
MvaI CCWGG 3 cut(s) 293, 538, 1055
MvnI CGCG 1 cut(s) 1122
NarI GGCGCC 1 cut(s) 13
NciI CCSGG 2 cut(s) 844, 1227
NcoI CCATGG 2 cut(s) 633, 871
NdeII GATC 4 cut(s) 115, 764, 1222, 1431
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 800
NspI RCATGY 2 cut(s) 1136, 1310
NspV TTCGAA 1 cut(s) 1501
PagI TCATGA 1 cut(s) 949
PasI CCCWGGG 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 2 cut(s) 1237, 1654
PfeI GAWTC 2 cut(s) 299, 486
PfoI TCCNGGA 2 cut(s) 291, 1225
PkrI GCNGC 7 cut(s) 416, 631, 837, 912, 915, 918, 1579
PleI GAGTC 3 cut(s) 370, 1111, 1673
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 3 cut(s) 370, 1111, 1673
PpuMI RGGWCCY 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 3 cut(s) 291, 536, 1053
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 3 cut(s) 291, 536, 1053
PspPI GGNCC 5 cut(s) 194, 534, 686, 698, 990
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 1690
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 2 cut(s) 1159, 1183
RsaNI GTAC 2 cut(s) 1158, 1182
RseI CAYNNNNRTG 1 cut(s) 1272
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 5 cut(s) 372, 642, 1217, 1383, 1400
SatI GCNGC 7 cut(s) 415, 630, 836, 911, 914, 917, 1578
Sau3AI GATC 4 cut(s) 115, 764, 1222, 1431
Sau96I GGNCC 5 cut(s) 194, 534, 686, 698, 990
SchI GAGTC 3 cut(s) 370, 1111, 1673
ScrFI CCNGG 5 cut(s) 293, 538, 844, 1055, 1227
SduI GDGCHC 5 cut(s) 124, 248, 562, 667, 1054
SfaNI GCATC 2 cut(s) 193, 334
SfcI CTRYAG 1 cut(s) 1686
SfoI GGCGCC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 1501
SinI GGWCC 5 cut(s) 194, 534, 686, 698, 990
SmiMI CAYNNNNRTG 1 cut(s) 1272
Sse9I AATT 8 cut(s) 420, 1218, 1342, 1384, 1401, 1563, 1586, 1662
SsiI CCGC 4 cut(s) 726, 1087, 1569, 1659
SspDI GGCGCC 1 cut(s) 12
SspI AATATT 1 cut(s) 395
SspMI CTAG 7 cut(s) 9, 816, 1041, 1125, 1251, 1295, 1616
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 5 cut(s) 291, 536, 842, 1053, 1225
StyI CCWWGG 5 cut(s) 8, 189, 633, 871, 1531
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 3 cut(s) 802, 1111, 1187
TaqI TCGA 4 cut(s) 41, 118, 1389, 1501
TaqII GACCGA 1 cut(s) 1057
TasI AATT 8 cut(s) 420, 1218, 1342, 1384, 1401, 1563, 1586, 1662
TatI WGTACW 1 cut(s) 1157
TfiI GAWTC 2 cut(s) 299, 486
Tru1I TTAA 5 cut(s) 372, 642, 1217, 1383, 1400
Tru9I TTAA 5 cut(s) 372, 642, 1217, 1383, 1400
TscAI CASTG 2 cut(s) 317, 1066
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 7 cut(s) 414, 629, 835, 910, 913, 916, 1577
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 9 cut(s) 69, 276, 474, 541, 614, 708, 726, 1230, 1234
TspRI CASTG 2 cut(s) 317, 1066
VpaK11BI GGWCC 5 cut(s) 194, 534, 686, 698, 990
XapI RAATTY 1 cut(s) 420
XceI RCATGY 2 cut(s) 1136, 1310
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmaJI CCTAGG 1 cut(s) 8
XspI CTAG 7 cut(s) 9, 816, 1041, 1125, 1251, 1295, 1616
ZraI GACGTC 2 cut(s) 800, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.