FvH4_2g08031

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000094
Physical Location & Seq
Forward (+)
6937132 .. 6939203
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08031.t1

Sequence Viewer

Length: 1656 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAGGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTTATGGATCGAGCTCCACAACCTCATACAGTGAAGAGGAGAGAAGTTTATGAGGCTGGAGCAAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCACAGATTTGCCAGAAGAAAAGAAGGTGAAGATGACAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTCGCTAGCAGGAATGTTGAGGATGCGCTGAATATGTCGTGGGAGCAGTTTAAGACGCTTTTCTTGGGGCAATATTTCAGTCCTGCCCACCGCAGCAGAATTCAGTCGGATTTCCTGAATATGAAGAAGAGGGATGATGAGGGTGTTATAGAGTTTCAGGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCAGATAAGATGACGGGTCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTCGATTCGTTCTCCATGCCAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTAATGAGAATAAATTGGGTTTTTAGTGGCTGTGAAGTTTTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCGATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTTCAGATGGTTTTGAGGTTGCTTTCCAAGCGGAAAGAGATGTTATTTTTAGTTGTATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATAATCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGCTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGATTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCTTGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTACCATCAGTTGTGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

552

Amino Acids

61.5

Weight (kDa)

6.07

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 1.3e-14 Retrotransposon gag protein
RVP_2 PF08284 233 - 364 7.5e-35 Retroviral aspartyl protease
RVT_1 PF00078 494 - 550 3.3e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 694
Acc65I GGTACC 1 cut(s) 1635
AccB1I GGYRCC 7 cut(s) 12, 185, 632, 1363, 1496, 1598, 1635
AccII CGCG 1 cut(s) 705
AccIII TCCGGA 1 cut(s) 1267
AciI CCGC 5 cut(s) 412, 670, 1118, 1152, 1385
AclWI GGATC 3 cut(s) 123, 800, 1577
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 3 cut(s) 13, 691, 1364
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 3 cut(s) 742, 766, 1637
AfiI CCNNNNNNNGG 1 cut(s) 733
AgsI TTSAA 6 cut(s) 181, 1067, 1393, 1402, 1409, 1531
AjnI CCWGG 5 cut(s) 291, 536, 636, 877, 1291
AluBI AGCT 4 cut(s) 122, 501, 614, 1202
AluI AGCT 4 cut(s) 122, 501, 614, 1202
Alw21I GWGCWC 3 cut(s) 124, 248, 1468
Alw26I GTCTC 4 cut(s) 876, 900, 1458, 1498
AlwI GGATC 3 cut(s) 123, 800, 1577
Aor13HI TCCGGA 1 cut(s) 1267
AoxI GGCC 1 cut(s) 1442
ApeKI GCWGC 2 cut(s) 414, 1160
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 773
Asp700I GAANNNNTTC 1 cut(s) 1335
Asp718I GGTACC 1 cut(s) 1635
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 4 cut(s) 15, 349, 707, 1366
AspS9I GGNCC 3 cut(s) 194, 534, 593
AsuC2I CCSGG 2 cut(s) 810, 1341
AsuHPI GGTGA 2 cut(s) 283, 920
AsuII TTCGAA 1 cut(s) 1084
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 3 cut(s) 194, 534, 593
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1281
BaeGI GKGCMC 2 cut(s) 562, 637
BanI GGYRCC 7 cut(s) 12, 185, 632, 1363, 1496, 1598, 1635
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 1065, 1097
BbsI GAAGAC 1 cut(s) 600
Bbv12I GWGCWC 3 cut(s) 124, 248, 1468
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 426, 1147
BccI CCATC 6 cut(s) 535, 871, 1045, 1088, 1487, 1647
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 5 cut(s) 293, 538, 638, 879, 1293
BciVI GTATCC 1 cut(s) 1207
BclI TGATCA 1 cut(s) 1585
BcnI CCSGG 2 cut(s) 810, 1341
BcoDI GTCTC 4 cut(s) 876, 900, 1458, 1498
BfaI CTAG 6 cut(s) 9, 327, 624, 708, 834, 1446
BfmI CTRYAG 2 cut(s) 1251, 1326
BfoI RGCGCY 2 cut(s) 16, 1367
BfuI GTATCC 1 cut(s) 1207
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 415, 1161
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 2 cut(s) 416, 1162
Bme1390I CCNGG 7 cut(s) 293, 538, 638, 810, 879, 1293, 1341
Bme18I GGWCC 3 cut(s) 194, 534, 593
BmgT120I GGNCC 3 cut(s) 194, 534, 593
BmrFI CCNGG 7 cut(s) 293, 538, 638, 810, 879, 1293, 1341
BmsI GCATC 2 cut(s) 193, 334
BmtI GCTAGC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 600
BpmI CTGGAG 5 cut(s) 186, 636, 732, 1365, 1452
Bpu10I CCTNAGC 2 cut(s) 101, 497
Bpu14I TTCGAA 1 cut(s) 1084
BpuMI CCSGG 2 cut(s) 810, 1341
Bsa29I ATCGAT 1 cut(s) 1572
BsaHI GRCGYC 3 cut(s) 13, 691, 1364
BsaJI CCNNGG 7 cut(s) 8, 17, 189, 636, 637, 1457, 1565
BsaWI WCCGGW 2 cut(s) 905, 1267
Bsc4I CCNNNNNNNGG 1 cut(s) 733
Bse1I ACTGG 3 cut(s) 81, 317, 1469
Bse21I CCTNAGG 1 cut(s) 1281
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 1 cut(s) 1267
BseBI CCWGG 5 cut(s) 293, 538, 638, 879, 1293
BseCI ATCGAT 1 cut(s) 1572
BseDI CCNNGG 7 cut(s) 8, 17, 189, 636, 637, 1457, 1565
BseGI GGATG 6 cut(s) 112, 301, 349, 460, 546, 1276
BseLI CCNNNNNNNGG 1 cut(s) 733
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 5 cut(s) 92, 488, 680, 1272, 1373
BseNI ACTGG 3 cut(s) 81, 317, 1469
BseRI GAGGAG 2 cut(s) 160, 1298
BseSI GKGCMC 2 cut(s) 562, 637
BseXI GCAGC 2 cut(s) 426, 1147
BseYI CCCAGC 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 1 cut(s) 1444
BshNI GGYRCC 7 cut(s) 12, 185, 632, 1363, 1496, 1598, 1635
BshVI ATCGAT 1 cut(s) 1572
BsiHKAI GWGCWC 3 cut(s) 124, 248, 1468
BsiSI CCGG 4 cut(s) 810, 906, 1268, 1341
BslFI GGGAC 3 cut(s) 87, 207, 678
BslI CCNNNNNNNGG 1 cut(s) 733
BsmAI GTCTC 4 cut(s) 876, 900, 1458, 1498
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 3 cut(s) 87, 207, 678
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 1 cut(s) 1444
Bsp119I TTCGAA 1 cut(s) 1084
Bsp1286I GDGCHC 5 cut(s) 124, 248, 562, 637, 1468
Bsp13I TCCGGA 1 cut(s) 1267
Bsp143I GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
BspACI CCGC 5 cut(s) 412, 670, 1118, 1152, 1385
BspANI GGCC 1 cut(s) 1444
BspCNI CTCAG 5 cut(s) 93, 489, 679, 1273, 1372
BspDI ATCGAT 1 cut(s) 1572
BspEI TCCGGA 1 cut(s) 1267
BspFNI CGCG 1 cut(s) 705
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 3 cut(s) 123, 800, 1577
BspT104I TTCGAA 1 cut(s) 1084
BspT107I GGYRCC 7 cut(s) 12, 185, 632, 1363, 1496, 1598, 1635
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 3 cut(s) 81, 317, 1469
BssECI CCNNGG 7 cut(s) 8, 17, 189, 636, 637, 1457, 1565
BssMI GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
BssNI GRCGYC 3 cut(s) 13, 691, 1364
BssT1I CCWWGG 3 cut(s) 8, 189, 1457
Bst2UI CCWGG 5 cut(s) 293, 538, 638, 879, 1293
Bst4CI ACNGT 3 cut(s) 139, 283, 1543
Bst6I CTCTTC 3 cut(s) 137, 443, 879
BstACI GRCGYC 3 cut(s) 13, 691, 1364
BstBI TTCGAA 1 cut(s) 1084
BstC8I GCNNGC 6 cut(s) 244, 324, 328, 717, 789, 1298
BstDEI CTNAG 5 cut(s) 101, 497, 666, 1281, 1359
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 6 cut(s) 112, 301, 349, 460, 546, 1276
BstFNI CGCG 1 cut(s) 705
BstH2I RGCGCY 2 cut(s) 16, 1367
BstHHI GCGC 4 cut(s) 15, 349, 707, 1366
BstKTI GATC 8 cut(s) 118, 808, 1017, 1356, 1572, 1588, 1631, 1653
BstMAI GTCTC 4 cut(s) 876, 900, 1458, 1498
BstMBI GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
BstMWI GCNNNNNNNGC 7 cut(s) 10, 19, 1046, 1115, 1160, 1199, 1297
BstNI CCWGG 5 cut(s) 293, 538, 638, 879, 1293
BstNSI RCATGY 3 cut(s) 719, 893, 1453
BstSCI CCNGG 7 cut(s) 291, 536, 636, 808, 877, 1291, 1339
BstSFI CTRYAG 2 cut(s) 1251, 1326
BstSLI GKGCMC 2 cut(s) 562, 637
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 2 cut(s) 426, 1147
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 1650
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 1 cut(s) 1650
Bsu15I ATCGAT 1 cut(s) 1572
Bsu36I CCTNAGG 1 cut(s) 1281
BsuI GTATCC 1 cut(s) 1207
BsuRI GGCC 1 cut(s) 1444
BsuTUI ATCGAT 1 cut(s) 1572
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 1064
BtsCI GGATG 6 cut(s) 112, 301, 349, 460, 546, 1276
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 5 cut(s) 144, 310, 649, 1476, 1548
Cac8I GCNNGC 6 cut(s) 244, 324, 328, 717, 789, 1298
CfoI GCGC 4 cut(s) 15, 349, 707, 1366
Cfr13I GGNCC 3 cut(s) 194, 534, 593
ClaI ATCGAT 1 cut(s) 1572
CseI GACGC 1 cut(s) 385
Csp6I GTAC 3 cut(s) 741, 765, 1636
CviAII CATG 9 cut(s) 506, 697, 716, 829, 851, 890, 1205, 1450, 1501
CviQI GTAC 3 cut(s) 741, 765, 1636
DdeI CTNAG 5 cut(s) 101, 497, 666, 1281, 1359
DinI GGCGCC 2 cut(s) 14, 1365
DpnI GATC 8 cut(s) 117, 807, 1016, 1355, 1571, 1587, 1630, 1652
DpnII GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
DraIII CACNNNGTG 1 cut(s) 566
Eam1104I CTCTTC 3 cut(s) 137, 443, 879
EarI CTCTTC 3 cut(s) 137, 443, 879
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 3 cut(s) 8, 189, 1457
Eco24I GRGCYC 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 194, 534, 593
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 594
Eco81I CCTNAGG 1 cut(s) 1281
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 2 cut(s) 194, 593
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 5 cut(s) 291, 536, 636, 877, 1291
EcoT14I CCWWGG 3 cut(s) 8, 189, 1457
EcoT22I ATGCAT 1 cut(s) 1514
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 2 cut(s) 14, 1365
EheI GGCGCC 2 cut(s) 14, 1365
ErhI CCWWGG 3 cut(s) 8, 189, 1457
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 9 cut(s) 509, 700, 719, 832, 854, 893, 1208, 1453, 1504
FaqI GGGAC 3 cut(s) 87, 207, 678
FatI CATG 9 cut(s) 505, 696, 715, 828, 850, 889, 1204, 1449, 1500
FauI CCCGC 1 cut(s) 663
FbaI TGATCA 1 cut(s) 1585
Fnu4HI GCNGC 2 cut(s) 415, 1161
FokI GGATG 6 cut(s) 119, 308, 356, 467, 553, 1283
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 415, 1161
FspBI CTAG 6 cut(s) 9, 327, 624, 708, 834, 1446
GlaI GCGC 4 cut(s) 14, 348, 706, 1365
GluI GCNGC 2 cut(s) 415, 1161
GsaI CCCAGC 1 cut(s) 730
GsuI CTGGAG 5 cut(s) 186, 636, 732, 1365, 1452
HaeII RGCGCY 2 cut(s) 16, 1367
HaeIII GGCC 1 cut(s) 1444
HapII CCGG 4 cut(s) 810, 906, 1268, 1341
HgaI GACGC 1 cut(s) 385
HhaI GCGC 4 cut(s) 15, 349, 707, 1366
Hin1I GRCGYC 3 cut(s) 13, 691, 1364
Hin1II CATG 9 cut(s) 509, 700, 719, 832, 854, 893, 1208, 1453, 1504
Hin6I GCGC 4 cut(s) 13, 347, 705, 1364
HinP1I GCGC 4 cut(s) 13, 347, 705, 1364
HinfI GANTC 6 cut(s) 299, 486, 700, 840, 1405, 1531
HpaII CCGG 4 cut(s) 810, 906, 1268, 1341
HphI GGTGA 2 cut(s) 283, 920
Hpy166II GTNNAC 2 cut(s) 220, 689
Hpy188I TCNGA 4 cut(s) 430, 656, 1093, 1569
Hpy188III TCNNGA 6 cut(s) 436, 479, 524, 749, 1268, 1280
Hpy8I GTNNAC 2 cut(s) 220, 689
HpyAV CCTTC 2 cut(s) 262, 953
HpyCH4III ACNGT 3 cut(s) 139, 283, 1543
HpyCH4IV ACGT 2 cut(s) 691, 767
HpyCH4V TGCA 6 cut(s) 578, 715, 1163, 1307, 1414, 1512
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 19, 1046, 1115, 1160, 1199, 1297
HpyF3I CTNAG 5 cut(s) 101, 497, 666, 1281, 1359
HpySE526I ACGT 2 cut(s) 691, 767
Hsp92I GRCGYC 3 cut(s) 13, 691, 1364
Hsp92II CATG 9 cut(s) 509, 700, 719, 832, 854, 893, 1208, 1453, 1504
HspAI GCGC 4 cut(s) 13, 347, 705, 1364
KasI GGCGCC 2 cut(s) 12, 1363
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 1267
KpnI GGTACC 1 cut(s) 1639
Ksp22I TGATCA 1 cut(s) 1585
Kzo9I GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
LmnI GCTCC 6 cut(s) 127, 167, 364, 812, 1384, 1471
Lsp1109I GCAGC 2 cut(s) 426, 1147
LweI GCATC 2 cut(s) 193, 334
MaeI CTAG 6 cut(s) 9, 327, 624, 708, 834, 1446
MaeII ACGT 2 cut(s) 691, 767
MaeIII GTNAC 2 cut(s) 283, 1537
MalI GATC 8 cut(s) 117, 807, 1016, 1355, 1571, 1587, 1630, 1652
MboI GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
MfeI CAATTG 1 cut(s) 1409
MflI RGATCY 1 cut(s) 1650
MhlI GDGCHC 5 cut(s) 124, 248, 562, 637, 1468
Mly113I GGCGCC 2 cut(s) 13, 1364
MlyI GAGTC 1 cut(s) 694
MmeI TCCRAC 1 cut(s) 408
Mph1103I ATGCAT 1 cut(s) 1514
MroI TCCGGA 1 cut(s) 1267
MroXI GAANNNNTTC 1 cut(s) 1335
MseI TTAA 6 cut(s) 372, 773, 800, 966, 983, 1482
MslI CAYNNNNRTG 1 cut(s) 855
MspA1I CMGCKG 4 cut(s) 614, 670, 1154, 1385
MspI CCGG 4 cut(s) 810, 906, 1268, 1341
MspR9I CCNGG 7 cut(s) 293, 538, 638, 810, 879, 1293, 1341
MunI CAATTG 1 cut(s) 1409
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 5 cut(s) 293, 538, 638, 879, 1293
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 7 cut(s) 10, 19, 1046, 1115, 1160, 1199, 1297
NarI GGCGCC 2 cut(s) 13, 1364
NciI CCSGG 2 cut(s) 810, 1341
NdeII GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 9 cut(s) 509, 700, 719, 832, 854, 893, 1208, 1453, 1504
NmuCI GTSAC 1 cut(s) 1537
NsiI ATGCAT 1 cut(s) 1514
NspI RCATGY 3 cut(s) 719, 893, 1453
NspV TTCGAA 1 cut(s) 1084
PaeI GCATGC 1 cut(s) 719
PasI CCCWGGG 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 1335
PfeI GAWTC 5 cut(s) 299, 486, 840, 1405, 1531
PfoI TCCNGGA 3 cut(s) 291, 808, 1339
PkrI GCNGC 2 cut(s) 416, 1162
PleI GAGTC 1 cut(s) 694
PluTI GGCGCC 2 cut(s) 16, 1367
PpsI GAGTC 1 cut(s) 694
PpuMI RGGWCCY 2 cut(s) 194, 593
PshBI ATTAAT 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 124
Psp5II RGGWCCY 2 cut(s) 194, 593
Psp6I CCWGG 5 cut(s) 291, 536, 636, 877, 1291
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 5 cut(s) 291, 536, 636, 877, 1291
PspPI GGNCC 3 cut(s) 194, 534, 593
PspPPI RGGWCCY 2 cut(s) 194, 593
PsuI RGATCY 1 cut(s) 1650
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 742, 766, 1637
RsaNI GTAC 3 cut(s) 741, 765, 1636
RseI CAYNNNNRTG 1 cut(s) 855
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 6 cut(s) 372, 773, 800, 966, 983, 1482
SatI GCNGC 2 cut(s) 415, 1161
Sau3AI GATC 8 cut(s) 115, 805, 1014, 1353, 1569, 1585, 1628, 1650
Sau96I GGNCC 3 cut(s) 194, 534, 593
SchI GAGTC 1 cut(s) 694
ScrFI CCNGG 7 cut(s) 293, 538, 638, 810, 879, 1293, 1341
SduI GDGCHC 5 cut(s) 124, 248, 562, 637, 1468
SfaNI GCATC 2 cut(s) 193, 334
SfcI CTRYAG 2 cut(s) 1251, 1326
SfoI GGCGCC 2 cut(s) 14, 1365
SfuI TTCGAA 1 cut(s) 1084
SinI GGWCC 3 cut(s) 194, 534, 593
SmiMI CAYNNNNRTG 1 cut(s) 855
SphI GCATGC 1 cut(s) 719
SsiI CCGC 5 cut(s) 412, 670, 1118, 1152, 1385
SspDI GGCGCC 2 cut(s) 12, 1363
SspI AATATT 1 cut(s) 395
SspMI CTAG 6 cut(s) 9, 327, 624, 708, 834, 1446
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 7 cut(s) 291, 536, 636, 808, 877, 1291, 1339
StyI CCWWGG 3 cut(s) 8, 189, 1457
TaaI ACNGT 3 cut(s) 139, 283, 1543
TaiI ACGT 2 cut(s) 694, 770
TaqI TCGA 6 cut(s) 41, 118, 838, 972, 1084, 1572
TaqII GACCGA 1 cut(s) 640
TfiI GAWTC 5 cut(s) 299, 486, 840, 1405, 1531
Tru1I TTAA 6 cut(s) 372, 773, 800, 966, 983, 1482
Tru9I TTAA 6 cut(s) 372, 773, 800, 966, 983, 1482
TscAI CASTG 5 cut(s) 144, 317, 649, 1476, 1548
TseFI GTSAC 1 cut(s) 1537
TseI GCWGC 2 cut(s) 414, 1160
Tsp45I GTSAC 1 cut(s) 1537
TspDTI ATGAA 4 cut(s) 458, 541, 813, 817
TspGWI ACGGA 1 cut(s) 1548
TspRI CASTG 5 cut(s) 144, 317, 649, 1476, 1548
VpaK11BI GGWCC 3 cut(s) 194, 534, 593
VspI ATTAAT 1 cut(s) 773
XapI RAATTY 1 cut(s) 420
XceI RCATGY 3 cut(s) 719, 893, 1453
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 1335
XspI CTAG 6 cut(s) 9, 327, 624, 708, 834, 1446
ZraI GACGTC 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.