FvH4_4g05524

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
4815386 .. 4816645
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05524.t1

Sequence Viewer

Length: 1260 bp
ATGGAAGAAGCTCATAGTTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGTTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACTCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGAAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

420

Amino Acids

48.86

Weight (kDa)

9.07

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 1 - 50 4.2e-18 Integrase zinc binding domain
SH3_Tf2-1 PF24626 282 - 346 1.1e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 643
AciI CCGC 3 cut(s) 347, 809, 1163
AclWI GGATC 1 cut(s) 1040
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 3 cut(s) 431, 602, 833
AcuI CTGAAG 3 cut(s) 150, 431, 460
AcyI GRCGYC 1 cut(s) 644
AfaI GTAC 2 cut(s) 247, 463
AfiI CCNNNNNNNGG 2 cut(s) 255, 878
AgeI ACCGGT 1 cut(s) 1111
AgsI TTSAA 3 cut(s) 67, 833, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
Alw21I GWGCWC 2 cut(s) 354, 445
AlwI GGATC 1 cut(s) 1040
Ama87I CYCGRG 1 cut(s) 916
AoxI GGCC 3 cut(s) 83, 721, 928
ApeKI GCWGC 5 cut(s) 29, 107, 452, 1060, 1234
ApoI RAATTY 3 cut(s) 431, 602, 833
ArsI GACNNNNNNTTYG 4 cut(s) 404, 436, 1075, 1107
AsiGI ACCGGT 1 cut(s) 1111
Asp700I GAANNNNTTC 1 cut(s) 1113
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 4 cut(s) 208, 412, 722, 929
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 4 cut(s) 208, 283, 286, 857
AvaI CYCGRG 1 cut(s) 916
AvaII GGWCC 2 cut(s) 208, 412
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 1 cut(s) 643
BanII GRGCYC 2 cut(s) 354, 445
BarI GAAGNNNNNNTAC 2 cut(s) 1011, 1043
Bbv12I GWGCWC 2 cut(s) 354, 445
BbvI GCAGC 5 cut(s) 16, 119, 464, 1047, 1246
BccI CCATC 3 cut(s) 248, 497, 592
BceAI ACGGC 1 cut(s) 166
BciVI GTATCC 3 cut(s) 993, 1030, 1251
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 2 cut(s) 630, 996
BfoI RGCGCY 1 cut(s) 647
BfuI GTATCC 3 cut(s) 993, 1030, 1251
BglII AGATCT 1 cut(s) 826
BisI GCNGC 5 cut(s) 30, 108, 453, 1061, 1235
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 5 cut(s) 31, 109, 454, 1062, 1236
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 208, 412
BmeT110I CYCGRG 1 cut(s) 916
BmgT120I GGNCC 4 cut(s) 208, 412, 722, 929
BmiI GGNNCC 5 cut(s) 209, 413, 414, 645, 1110
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 1221
BplI GAGNNNNNCTC 2 cut(s) 759, 791
BpmI CTGGAG 1 cut(s) 969
Bpu10I CCTNAGC 1 cut(s) 1145
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 197, 761
BpuMI CCSGG 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 970
BsaHI GRCGYC 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 219, 872, 917
BsaWI WCCGGW 1 cut(s) 1111
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 878
Bse118I RCCGGY 1 cut(s) 1111
Bse1I ACTGG 2 cut(s) 194, 314
BseCI ATCGAT 1 cut(s) 970
BseDI CCNNGG 3 cut(s) 219, 872, 917
BseGI GGATG 3 cut(s) 34, 490, 817
BseLI CCNNNNNNNGG 2 cut(s) 255, 878
BseMII CTCAG 2 cut(s) 509, 800
BseNI ACTGG 2 cut(s) 194, 314
BseRI GAGGAG 1 cut(s) 1235
BseXI GCAGC 5 cut(s) 16, 119, 464, 1047, 1246
BsgI GTGCAG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 1129
BshFI GGCC 3 cut(s) 85, 723, 930
BshNI GGYRCC 1 cut(s) 643
BshTI ACCGGT 1 cut(s) 1111
BshVI ATCGAT 1 cut(s) 970
BsiEI CGRYCG 1 cut(s) 1129
BsiHKAI GWGCWC 2 cut(s) 354, 445
BsiHKCI CYCGRG 1 cut(s) 916
BsiSI CCGG 2 cut(s) 38, 1112
BslFI GGGAC 2 cut(s) 221, 425
BslI CCNNNNNNNGG 2 cut(s) 255, 878
BsmFI GGGAC 2 cut(s) 221, 425
BsnI GGCC 3 cut(s) 85, 723, 930
BsoBI CYCGRG 1 cut(s) 916
Bsp1286I GDGCHC 2 cut(s) 354, 445
Bsp143I GATC 4 cut(s) 406, 826, 1045, 1074
Bsp1720I GCTNAGC 1 cut(s) 911
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 3 cut(s) 347, 809, 1163
BspANI GGCC 3 cut(s) 85, 723, 930
BspCNI CTCAG 2 cut(s) 508, 799
BspDI ATCGAT 1 cut(s) 970
BspLI GGNNCC 5 cut(s) 209, 413, 414, 645, 1110
BspPI GGATC 1 cut(s) 1040
BspQI GCTCTTC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 643
BsrFI RCCGGY 1 cut(s) 1111
BsrI ACTGG 2 cut(s) 194, 314
BssAI RCCGGY 1 cut(s) 1111
BssECI CCNNGG 3 cut(s) 219, 872, 917
BssMI GATC 4 cut(s) 406, 826, 1045, 1074
BssNI GRCGYC 1 cut(s) 644
BssT1I CCWWGG 2 cut(s) 219, 872
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 5 cut(s) 89, 450, 479, 1098, 1256
BstACI GRCGYC 1 cut(s) 644
BstAPI GCANNNNNTGC 2 cut(s) 29, 1231
BstC8I GCNNGC 1 cut(s) 680
BstDEI CTNAG 4 cut(s) 495, 786, 911, 1145
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 876
BstF5I GGATG 3 cut(s) 34, 490, 817
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 4 cut(s) 409, 829, 1048, 1077
BstMBI GATC 4 cut(s) 406, 826, 1045, 1074
BstMCI CGRYCG 1 cut(s) 1129
BstMWI GCNNNNNNNGC 5 cut(s) 29, 449, 907, 1066, 1231
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 5 cut(s) 16, 119, 464, 1047, 1246
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
Bsu15I ATCGAT 1 cut(s) 970
BsuI GTATCC 3 cut(s) 993, 1030, 1251
BsuRI GGCC 3 cut(s) 85, 723, 930
BsuTUI ATCGAT 1 cut(s) 970
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 3 cut(s) 34, 490, 817
BtsI GCAGTG 2 cut(s) 480, 677
BtsIMutI CAGTG 4 cut(s) 201, 321, 480, 677
Cac8I GCNNGC 1 cut(s) 680
CfoI GCGC 1 cut(s) 646
Cfr10I RCCGGY 1 cut(s) 1111
Cfr13I GGNCC 4 cut(s) 208, 412, 722, 929
ClaI ATCGAT 1 cut(s) 970
Csp6I GTAC 2 cut(s) 246, 462
CspAI ACCGGT 1 cut(s) 1111
CviAII CATG 9 cut(s) 91, 220, 260, 380, 559, 737, 1016, 1024, 1055
CviQI GTAC 2 cut(s) 246, 462
DdeI CTNAG 4 cut(s) 495, 786, 911, 1145
DinI GGCGCC 1 cut(s) 645
DpnI GATC 4 cut(s) 408, 828, 1047, 1076
DpnII GATC 4 cut(s) 406, 826, 1045, 1074
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 5 cut(s) 89, 450, 479, 1098, 1256
EarI CTCTTC 5 cut(s) 89, 450, 479, 1098, 1256
EciI GGCGGA 1 cut(s) 362
Ecl136II GAGCTC 2 cut(s) 352, 443
Eco130I CCWWGG 2 cut(s) 219, 872
Eco24I GRGCYC 2 cut(s) 354, 445
Eco47I GGWCC 2 cut(s) 208, 412
Eco53kI GAGCTC 2 cut(s) 352, 443
Eco57I CTGAAG 3 cut(s) 150, 431, 460
Eco88I CYCGRG 1 cut(s) 916
EcoICRI GAGCTC 2 cut(s) 352, 443
EcoNI CCTNNNNNAGG 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 412
EcoT14I CCWWGG 2 cut(s) 219, 872
EcoT38I GRGCYC 2 cut(s) 354, 445
EgeI GGCGCC 1 cut(s) 645
EheI GGCGCC 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 219, 872
FaeI CATG 9 cut(s) 94, 223, 263, 383, 562, 740, 1019, 1027, 1058
FaqI GGGAC 2 cut(s) 221, 425
FatI CATG 9 cut(s) 90, 219, 259, 379, 558, 736, 1015, 1023, 1054
FauI CCCGC 1 cut(s) 1170
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 30, 108, 453, 1061, 1235
FokI GGATG 3 cut(s) 21, 477, 824
FriOI GRGCYC 2 cut(s) 354, 445
Fsp4HI GCNGC 5 cut(s) 30, 108, 453, 1061, 1235
FspBI CTAG 2 cut(s) 630, 996
GlaI GCGC 1 cut(s) 645
GluI GCNGC 5 cut(s) 30, 108, 453, 1061, 1235
GsuI CTGGAG 1 cut(s) 969
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 3 cut(s) 85, 723, 930
HapII CCGG 2 cut(s) 38, 1112
HhaI GCGC 1 cut(s) 646
Hin1I GRCGYC 1 cut(s) 644
Hin1II CATG 9 cut(s) 94, 223, 263, 383, 562, 740, 1019, 1027, 1058
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 5 cut(s) 288, 392, 774, 1120, 1214
HpaII CCGG 2 cut(s) 38, 1112
HphI GGTGA 4 cut(s) 208, 283, 286, 857
Hpy166II GTNNAC 1 cut(s) 239
Hpy188III TCNNGA 8 cut(s) 168, 389, 410, 778, 830, 859, 986, 1124
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 61, 174, 660, 1059
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 6 cut(s) 23, 107, 302, 562, 1063, 1234
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 449, 907, 1066, 1231
HpyF3I CTNAG 4 cut(s) 495, 786, 911, 1145
Hsp92I GRCGYC 1 cut(s) 644
Hsp92II CATG 9 cut(s) 94, 223, 263, 383, 562, 740, 1019, 1027, 1058
HspAI GCGC 1 cut(s) 644
KasI GGCGCC 1 cut(s) 643
KflI GGGWCCC 1 cut(s) 412
Kzo9I GATC 4 cut(s) 406, 826, 1045, 1074
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 4 cut(s) 349, 440, 1135, 1222
Lsp1109I GCAGC 5 cut(s) 16, 119, 464, 1047, 1246
LweI GCATC 1 cut(s) 1221
MaeI CTAG 2 cut(s) 630, 996
MaeIII GTNAC 1 cut(s) 739
MalI GATC 4 cut(s) 408, 828, 1047, 1076
MboI GATC 4 cut(s) 406, 826, 1045, 1074
MboII GAAGA 8 cut(s) 17, 106, 437, 466, 763, 1115, 1211, 1243
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 2 cut(s) 354, 445
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 9 cut(s) 102, 332, 341, 366, 431, 467, 602, 833, 863
MluNI TGGCCA 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 644
MlyI GAGTC 2 cut(s) 282, 768
MmeI TCCRAC 1 cut(s) 671
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 1113
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 731, 756
MslI CAYNNNNRTG 3 cut(s) 50, 218, 638
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 2 cut(s) 38, 1112
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 29, 449, 907, 1066, 1231
NarI GGCGCC 1 cut(s) 644
NciI CCSGG 1 cut(s) 39
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 25
NdeII GATC 4 cut(s) 406, 826, 1045, 1074
NlaIII CATG 9 cut(s) 94, 223, 263, 383, 562, 740, 1019, 1027, 1058
NlaIV GGNNCC 5 cut(s) 209, 413, 414, 645, 1110
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 1113
PfeI GAWTC 3 cut(s) 392, 1120, 1214
PinAI ACCGGT 1 cut(s) 1111
PkrI GCNGC 5 cut(s) 31, 109, 454, 1062, 1236
PleI GAGTC 2 cut(s) 282, 768
PluTI GGCGCC 1 cut(s) 647
PpsI GAGTC 2 cut(s) 282, 768
PpuMI RGGWCCY 1 cut(s) 412
Psp124BI GAGCTC 2 cut(s) 354, 445
Psp5II RGGWCCY 1 cut(s) 412
PspN4I GGNNCC 5 cut(s) 209, 413, 414, 645, 1110
PspPI GGNCC 4 cut(s) 208, 412, 722, 929
PspPPI RGGWCCY 1 cut(s) 412
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 2 cut(s) 247, 463
RsaNI GTAC 2 cut(s) 246, 462
RseI CAYNNNNRTG 3 cut(s) 50, 218, 638
SacI GAGCTC 2 cut(s) 354, 445
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 731, 756
SatI GCNGC 5 cut(s) 30, 108, 453, 1061, 1235
Sau3AI GATC 4 cut(s) 406, 826, 1045, 1074
Sau96I GGNCC 4 cut(s) 208, 412, 722, 929
SchI GAGTC 2 cut(s) 282, 768
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 2 cut(s) 354, 445
SfaNI GCATC 1 cut(s) 1221
SfoI GGCGCC 1 cut(s) 645
SinI GGWCC 2 cut(s) 208, 412
SmiMI CAYNNNNRTG 3 cut(s) 50, 218, 638
SmlI CTYRAG 2 cut(s) 176, 776
SmoI CTYRAG 2 cut(s) 176, 776
Sse9I AATT 9 cut(s) 102, 332, 341, 366, 431, 467, 602, 833, 863
SsiI CCGC 3 cut(s) 347, 809, 1163
SspDI GGCGCC 1 cut(s) 643
SspMI CTAG 2 cut(s) 630, 996
SstI GAGCTC 2 cut(s) 354, 445
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 2 cut(s) 219, 872
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 3 cut(s) 418, 970, 1125
TaqII GACCGA 1 cut(s) 1143
TasI AATT 9 cut(s) 102, 332, 341, 366, 431, 467, 602, 833, 863
TfiI GAWTC 3 cut(s) 392, 1120, 1214
Tru1I TTAA 2 cut(s) 731, 756
Tru9I TTAA 2 cut(s) 731, 756
TscAI CASTG 4 cut(s) 201, 321, 487, 677
TseI GCWGC 5 cut(s) 29, 107, 452, 1060, 1234
TspDTI ATGAA 7 cut(s) 107, 368, 378, 479, 711, 1004, 1116
TspGWI ACGGA 2 cut(s) 806, 1233
TspRI CASTG 4 cut(s) 201, 321, 487, 677
VpaK11BI GGWCC 2 cut(s) 208, 412
XagI CCTNNNNNAGG 1 cut(s) 876
XapI RAATTY 3 cut(s) 431, 602, 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 1113
XspI CTAG 2 cut(s) 630, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.