FvH4_4g15586

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
19344034 .. 19346727
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15586.t1

Sequence Viewer

Length: 2694 bp
ATGGCACCTGCAGAATTAAAAGAGTTAAAAACTCAATTGCAGGAGTTGGTGGATAAAGGTTTTATTCAGCCTAGTATGTCTCCTTGGGGTGCTCCAGTGTTAATTGTCAAGAAGAAAGATGGCACCATGAGACTATGTGTGGATTATAGGAAGTTGAACCAGGTTACGGTGAAGAATAAATATCCTTTGCCCCGCATTGATGATTTATTCGATCAGTTGAGGGGTGCCACAGTCTTTTCAAAGATTGATTTGAGATCAGGATATCATCAGTTGCGGATTCGGGAAAGTAATATAGCCAAGACTGCTTTTCGATCACGTTATGGTCATTATGAGTTTGTGGTGATGCCGTTTGGACTTACTAATGCACCCGCTGCTTTCACGGATCTCATGAATAGGGTGTTCCGTCCATATCTTGACCATTTCGTGATTGTATTCATAGATGACATCTTGGTGTATTCGAAGAATTTGAAGCAGCATGCTAAGCATTTAAAGATGGTATTGCAGACTTTGAGGGAAGCTCAGTTATATGCAAAGCTTAGTAAATGTGAGTTTTGGTTGGATAAAGTGGGGTTTCTAGGCCATGTGGTTTCGGCAGAAGGTGTTAGTGTGGATCCCCAAAAGATAGAAGCGGTGACAAATTGGAAGAGGCCTTCTAGCGTGACGGAGATCCGTAGTTTCTTGGGGTTGGCCGGTTATTATCGCCGTTTTGTCCAAGATTTCTCAAAGATTGCCGCTCCTCTTACAAGATTGACCCGGAAGGGGGTTAAGTTAGAGTGGTCTGAGAAGTGTGAGCAGAGCTTTCAGGAGCTCAAGGATCGTTTAACTAGTGCTCCAGTTTTAGCACTCCCTGATGATAGTGGGGAGTATGTGGTTTATTGCGATGCTTCTAGGCAGGGTTTGGGTGGTGTATTGATGCAGCATGAAAGAGTAATTGCTTATGCTTCTAGGCAACTGAAGCCGCATGAAGGGAATTACCCCACCCACGACCTAGAGCTTGCTGCAGTGGTTTTTGTGTTGAAATTATGGAGACATTATCTCTATGGAGCCAAGTGCCAGATCTTCACCGACCATAAGAGCCTTCGGTATGTGTTCACTCATAGAGAATTAAATATGAGGCAAAGAAGGTGGATGGAGTTGATTAAAGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTAGTAGCGGATGCTCTTAGTCGCAACCCTTCTATGTCCTTAGCTTATATGAGGACGGTTCGGGTTCCACTTCTTTATGAGTTGCGAGCTACAGGAGTGGAGTTGTCAGTGGATGAGATTGGTGCTTTGGTAGCCAGTTTCCATATGAGGCCAGTTTTGATTGATAAAGTGCATGAGGCTCAGTATAATGATCCTTCCATAGTTTGGTTGATAGAAAGAGCACTTAATGGAATGGCAAGGGATTTTTCTGTGAGGAGAGATGGAGCCTTGTTGTTTAAAAATAGGCTATGTGTTCCGAAGAGGAACTTAGAGTTGAAACAGGAGATAATGGAGGAAGCTCATAGTTCTAATTATGCTGCTCATCCTGGTAGTACAAAAATGTACAGGACCATGAAGGATTTTTATTGGTGGCCCAATATGAAAAGGGAGATTGCCGCTTATGTAAGTAAGTGTTTGATTTGTCAGCAAGTCAAAGCTGAGAGGCAGAAACCTTCTGGTCTGCTAGAGCCATTGCCTATTCCTATATGGAAGTGGGACCACATTGCCATGAATTTTGTTTTTAGCTTACCTCGTACTCGTGATGGGCATGATGGTATTTGGGTGATTGTGGATCGATTAACAAAGTCAGCACATTTTCTGCCAGTGGGGAAGAAGTATAAGTTGGCTAAATTGGCAGAACTTTATGTGAATGAAATTGTGAGACTCCATGGTGTGCCTGAGTCTATTGTTTCTGATCGGGATCCCAGATTTGTTTCTAAATTCTGGGGAGCTTTGCAGGCAGCTTTGGGCACTCGGTTGCACTTCAGCACAGCTTTTCATCCTCAAACAGACGGGCAGTCTGAGAGGACTATTCAGACCATGGAGGACATGTTGAGGTCATGTGCTATGCAATTCAGAGGGAGTTGGGATAAGAATTTGTCCTTGGTAGAATTTGCCTACAACAATAGTTTTCATTCTAGCATAGGTATGACTCCCTTTGAAGCGCTTTATGGGCGGCAGTGTCGTACACCTCTATGTTGGAATGAGGTGGGAGAAAAAGAATTTTGTGGTCCAGAGATTATCCAGGATACAAATGAGAAGATCAAGATGATTAGAGAAAGGCTTAAAGCAACTCAAAATAGGCAGAAGAGTTATGCAGATAATCGCAGAAAGGACCCTGAGTTTCAAGTGGGTGATTGGGTATTTTTGAAATTATCCCCTTGGAAGGGAGTAGTGCGTTTTGGTAAACGGGGAAAGCTTAGCCCGCGGTATATTGGTCCTTATGAGATTGTAGAGCGGGTTGGCACAGTTGCTTATCGATTGGAGCTACCTTCAGAGCTGTCCCGGATACATAATGTTTTCCATGTATCCATGCTACGCAAGTATATTGTCGATCCCTCTCATGTCTTGCAAGAGCAGCCGATAAGTTTGAAGAAAGATTTGTCATATGTAGAGGAACCGGTTCAGATTCTTGATCGAAAGGAGCAAGTGCTTAGGAACAAAACGATTCCATTGGTTAAAGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

898

Amino Acids

103.87

Weight (kDa)

9.45

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 36 - 195 4.4e-37 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 259 - 353 1.6e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 285 - 383 2e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 499 - 554 7e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 786 - 850 1.4e-28 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 16
AccB1I GGYRCC 3 cut(s) 4, 122, 224
AccB7I CCANNNNNTGG 1 cut(s) 1389
AccBSI CCGCTC 2 cut(s) 734, 2461
AccII CGCG 1 cut(s) 2431
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 6 cut(s) 463, 1735, 1943, 2098, 2114, 2225
AcuI CTGAAG 3 cut(s) 974, 1972, 2481
AfaI GTAC 4 cut(s) 1558, 1568, 1759, 2191
AfeI AGCGCT 1 cut(s) 2169
AfiI CCNNNNNNNGG 7 cut(s) 166, 759, 760, 965, 1389, 2389, 2390
AflIII ACRYGT 1 cut(s) 2052
AgeI ACCGGT 1 cut(s) 2623
AgsI TTSAA 9 cut(s) 157, 240, 469, 1018, 1501, 2165, 2351, 2374, 2596
AhdI GACNNNNNGTC 1 cut(s) 2020
AhlI ACTAGT 1 cut(s) 824
AjnI CCWGG 4 cut(s) 159, 1171, 1549, 2247
AjuI GAANNNNNNNTTGG 4 cut(s) 1829, 1861, 2090, 2122
Alw21I GWGCWC 4 cut(s) 94, 810, 832, 1408
Alw26I GTCTC 4 cut(s) 84, 124, 1021, 1879
Aor51HI AGCGCT 1 cut(s) 2169
AoxI GGCC 5 cut(s) 577, 647, 687, 1334, 1595
ApeKI GCWGC 7 cut(s) 371, 472, 916, 998, 1541, 1964, 2581
ApoI RAATTY 6 cut(s) 463, 1735, 1943, 2098, 2114, 2225
AsiGI ACCGGT 1 cut(s) 2623
Asp700I GAANNNNTTC 1 cut(s) 2625
AspLEI GCGC 1 cut(s) 2170
AspS9I GGNCC 6 cut(s) 1572, 1596, 1720, 2234, 2338, 2441
AsuC2I CCSGG 2 cut(s) 754, 2509
AsuHPI GGTGA 6 cut(s) 181, 352, 643, 1054, 1798, 2369
AsuII TTCGAA 1 cut(s) 458
AvaII GGWCC 5 cut(s) 1572, 1720, 2234, 2338, 2441
BaeGI GKGCMC 1 cut(s) 1976
BamHI GGATCC 2 cut(s) 610, 1924
BanI GGYRCC 3 cut(s) 4, 122, 224
BanII GRGCYC 1 cut(s) 810
BauI CACGAG 1 cut(s) 1761
Bbv12I GWGCWC 4 cut(s) 94, 810, 832, 1408
BbvI GCAGC 7 cut(s) 358, 484, 928, 985, 1528, 1976, 2593
BccI CCATC 6 cut(s) 113, 487, 1123, 1439, 1760, 1769
BceAI ACGGC 2 cut(s) 331, 687
BciT130I CCWGG 4 cut(s) 161, 1173, 1551, 2249
BciVI GTATCC 3 cut(s) 2245, 2505, 2542
BcnI CCSGG 2 cut(s) 754, 2509
BcoDI GTCTC 4 cut(s) 84, 124, 1021, 1879
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 9 cut(s) 72, 575, 654, 825, 888, 945, 989, 1688, 2142
BfmI CTRYAG 3 cut(s) 9, 999, 1275
BfoI RGCGCY 1 cut(s) 2171
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 3 cut(s) 2245, 2505, 2542
BglII AGATCT 1 cut(s) 1056
BlpI GCTNAGC 2 cut(s) 480, 2423
Bme1390I CCNGG 6 cut(s) 161, 754, 1173, 1551, 2249, 2509
Bme18I GGWCC 5 cut(s) 1572, 1720, 2234, 2338, 2441
BmeRI GACNNNNNGTC 1 cut(s) 2020
BmgT120I GGNCC 6 cut(s) 1572, 1596, 1720, 2234, 2338, 2441
BmrFI CCNGG 6 cut(s) 161, 754, 1173, 1551, 2249, 2509
BmsI GCATC 4 cut(s) 333, 871, 903, 1186
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 2 cut(s) 78, 816
Bpu10I CCTNAGC 2 cut(s) 1225, 2657
Bpu1102I GCTNAGC 2 cut(s) 480, 2423
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 2 cut(s) 754, 2509
Bsa29I ATCGAT 2 cut(s) 1798, 2482
BsaBI GATNNNNATC 1 cut(s) 1923
BsaJI CCNNGG 6 cut(s) 83, 1891, 2043, 2106, 2384, 2429
BsaWI WCCGGW 1 cut(s) 2623
BsaXI ACNNNNNCTCC 4 cut(s) 814, 844, 2039, 2069
Bsc4I CCNNNNNNNGG 7 cut(s) 166, 759, 760, 965, 1389, 2389, 2390
Bse118I RCCGGY 2 cut(s) 689, 2623
Bse1I ACTGG 5 cut(s) 95, 833, 1320, 1337, 1826
Bse3DI GCAATG 2 cut(s) 1694, 1725
Bse8I GATNNNNATC 1 cut(s) 1923
BseBI CCWGG 4 cut(s) 161, 1173, 1551, 2249
BseCI ATCGAT 2 cut(s) 1798, 2482
BseDI CCNNGG 6 cut(s) 83, 1891, 2043, 2106, 2384, 2429
BseGI GGATG 6 cut(s) 1134, 1168, 1201, 1303, 1546, 2002
BseJI GATNNNNATC 1 cut(s) 1923
BseLI CCNNNNNNNGG 7 cut(s) 166, 759, 760, 965, 1389, 2389, 2390
BseMI GCAATG 2 cut(s) 1694, 1725
BseMII CTCAG 7 cut(s) 533, 771, 1379, 1653, 1893, 2016, 2334
BseNI ACTGG 5 cut(s) 95, 833, 1320, 1337, 1826
BseRI GAGGAG 2 cut(s) 726, 1453
BseSI GKGCMC 1 cut(s) 1976
BseXI GCAGC 7 cut(s) 358, 484, 928, 985, 1528, 1976, 2593
Bsh1236I CGCG 1 cut(s) 2431
BshFI GGCC 5 cut(s) 579, 649, 689, 1336, 1597
BshNI GGYRCC 3 cut(s) 4, 122, 224
BshTI ACCGGT 1 cut(s) 2623
BshVI ATCGAT 2 cut(s) 1798, 2482
BsiHKAI GWGCWC 4 cut(s) 94, 810, 832, 1408
BsiSI CCGG 4 cut(s) 690, 754, 2509, 2624
BslFI GGGAC 2 cut(s) 1733, 2491
BslI CCNNNNNNNGG 7 cut(s) 166, 759, 760, 965, 1389, 2389, 2390
BsmAI GTCTC 4 cut(s) 84, 124, 1021, 1879
BsmFI GGGAC 2 cut(s) 1733, 2491
BsnI GGCC 5 cut(s) 579, 649, 689, 1336, 1597
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 5 cut(s) 94, 810, 832, 1408, 1976
Bsp1407I TGTACA 1 cut(s) 1566
Bsp1720I GCTNAGC 2 cut(s) 480, 2423
Bsp19I CCATGG 2 cut(s) 1891, 2043
BspANI GGCC 5 cut(s) 579, 649, 689, 1336, 1597
BspCNI CTCAG 7 cut(s) 532, 772, 1378, 1654, 1894, 2017, 2335
BspDI ATCGAT 2 cut(s) 1798, 2482
BspFNI CGCG 1 cut(s) 2431
BspHI TCATGA 1 cut(s) 387
BspMAI CTGCAG 2 cut(s) 13, 1003
BspMI ACCTGC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 3 cut(s) 4, 122, 224
BsrBI CCGCTC 2 cut(s) 734, 2461
BsrDI GCAATG 2 cut(s) 1694, 1725
BsrFI RCCGGY 2 cut(s) 689, 2623
BsrGI TGTACA 1 cut(s) 1566
BsrI ACTGG 5 cut(s) 95, 833, 1320, 1337, 1826
BssAI RCCGGY 2 cut(s) 689, 2623
BssECI CCNNGG 6 cut(s) 83, 1891, 2043, 2106, 2384, 2429
BssSI CACGAG 1 cut(s) 1761
BssT1I CCWWGG 5 cut(s) 83, 1891, 2043, 2106, 2384
Bst2BI CACGAG 1 cut(s) 1761
Bst2UI CCWGG 4 cut(s) 161, 1173, 1551, 2249
Bst4CI ACNGT 4 cut(s) 169, 232, 1243, 2473
Bst6I CTCTTC 3 cut(s) 638, 1478, 2306
BstAPI GCANNNNNTGC 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 1566
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 5 cut(s) 477, 996, 1272, 1962, 2429
BstDSI CCRYGG 3 cut(s) 1891, 2043, 2429
BstF5I GGATG 6 cut(s) 1134, 1168, 1201, 1303, 1546, 2002
BstFNI CGCG 1 cut(s) 2431
BstH2I RGCGCY 1 cut(s) 2171
BstHHI GCGC 1 cut(s) 2170
BstMAI GTCTC 4 cut(s) 84, 124, 1021, 1879
BstNI CCWGG 4 cut(s) 161, 1173, 1551, 2249
BstNSI RCATGY 2 cut(s) 479, 2056
BstSCI CCNGG 6 cut(s) 159, 752, 1171, 1549, 2247, 2507
BstSFI CTRYAG 3 cut(s) 9, 999, 1275
BstSLI GKGCMC 1 cut(s) 1976
BstUI CGCG 1 cut(s) 2431
BstV1I GCAGC 7 cut(s) 358, 484, 928, 985, 1528, 1976, 2593
BstX2I RGATCY 5 cut(s) 382, 610, 666, 1056, 1924
BstYI RGATCY 5 cut(s) 382, 610, 666, 1056, 1924
Bsu15I ATCGAT 2 cut(s) 1798, 2482
BsuI GTATCC 3 cut(s) 2245, 2505, 2542
BsuRI GGCC 5 cut(s) 579, 649, 689, 1336, 1597
BsuTUI ATCGAT 2 cut(s) 1798, 2482
BtgI CCRYGG 3 cut(s) 1891, 2043, 2429
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 6 cut(s) 1134, 1168, 1201, 1303, 1546, 2002
BtsI GCAGTG 2 cut(s) 1008, 2189
BtsIMutI CAGTG 5 cut(s) 102, 1008, 1299, 1833, 2189
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 5 cut(s) 477, 996, 1272, 1962, 2429
CciI TCATGA 1 cut(s) 387
CfoI GCGC 1 cut(s) 2170
Cfr10I RCCGGY 2 cut(s) 689, 2623
Cfr13I GGNCC 6 cut(s) 1572, 1596, 1720, 2234, 2338, 2441
Cfr42I CCGCGG 1 cut(s) 2432
ClaI ATCGAT 2 cut(s) 1798, 2482
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 4 cut(s) 1557, 1567, 1758, 2190
CspAI ACCGGT 1 cut(s) 2623
CspCI CAANNNNNGTGG 2 cut(s) 1106, 1141
CviQI GTAC 4 cut(s) 1557, 1567, 1758, 2190
DraI TTTAAA 2 cut(s) 489, 1462
DriI GACNNNNNGTC 1 cut(s) 2020
EaeI YGGCCR 1 cut(s) 687
Eam1104I CTCTTC 3 cut(s) 638, 1478, 2306
Eam1105I GACNNNNNGTC 1 cut(s) 2020
EarI CTCTTC 3 cut(s) 638, 1478, 2306
Ecl136II GAGCTC 1 cut(s) 808
Eco130I CCWWGG 5 cut(s) 83, 1891, 2043, 2106, 2384
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 810
Eco32I GATATC 1 cut(s) 263
Eco47I GGWCC 5 cut(s) 1572, 1720, 2234, 2338, 2441
Eco47III AGCGCT 1 cut(s) 2169
Eco53kI GAGCTC 1 cut(s) 808
Eco57I CTGAAG 3 cut(s) 974, 1972, 2481
EcoICRI GAGCTC 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 2338
EcoRII CCWGG 4 cut(s) 159, 1171, 1549, 2247
EcoRV GATATC 1 cut(s) 263
EcoT14I CCWWGG 5 cut(s) 83, 1891, 2043, 2106, 2384
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 5 cut(s) 83, 1891, 2043, 2106, 2384
FalI AAGNNNNNCTT 2 cut(s) 1475, 1507
FaqI GGGAC 2 cut(s) 1733, 2491
FauI CCCGC 4 cut(s) 200, 376, 2436, 2454
FauNDI CATATG 2 cut(s) 1329, 2611
FokI GGATG 6 cut(s) 1141, 1155, 1208, 1310, 1533, 1989
FriOI GRGCYC 1 cut(s) 810
FspBI CTAG 9 cut(s) 72, 575, 654, 825, 888, 945, 989, 1688, 2142
GlaI GCGC 1 cut(s) 2169
GsuI CTGGAG 2 cut(s) 78, 816
HaeII RGCGCY 1 cut(s) 2171
HaeIII GGCC 5 cut(s) 579, 649, 689, 1336, 1597
HapII CCGG 4 cut(s) 690, 754, 2509, 2624
HhaI GCGC 1 cut(s) 2170
Hin6I GCGC 1 cut(s) 2168
HinP1I GCGC 1 cut(s) 2168
HindIII AAGCTT 2 cut(s) 533, 2420
HinfI GANTC 6 cut(s) 277, 1887, 1904, 2155, 2632, 2671
HpaII CCGG 4 cut(s) 690, 754, 2509, 2624
HphI GGTGA 6 cut(s) 181, 352, 643, 1054, 1798, 2369
Hpy166II GTNNAC 3 cut(s) 1092, 2192, 2411
Hpy188I TCNGA 8 cut(s) 781, 1482, 1918, 2026, 2040, 2081, 2500, 2631
Hpy8I GTNNAC 3 cut(s) 1092, 2192, 2411
HpyCH4III ACNGT 4 cut(s) 169, 232, 1243, 2473
HpyCH4IV ACGT 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 316
HspAI GCGC 1 cut(s) 2168
KspI CCGCGG 1 cut(s) 2432
LmnI GCTCC 9 cut(s) 97, 739, 805, 835, 1043, 1448, 1952, 2488, 2647
Lsp1109I GCAGC 7 cut(s) 358, 484, 928, 985, 1528, 1976, 2593
LweI GCATC 4 cut(s) 333, 871, 903, 1186
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 9 cut(s) 72, 575, 654, 825, 888, 945, 989, 1688, 2142
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 163, 631, 658
MbiI CCGCTC 2 cut(s) 734, 2461
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 5 cut(s) 382, 610, 666, 1056, 1924
MhlI GDGCHC 5 cut(s) 94, 810, 832, 1408, 1976
MlyI GAGTC 3 cut(s) 1881, 1913, 2149
MmeI TCCRAC 2 cut(s) 537, 2183
MroXI GAANNNNTTC 1 cut(s) 2625
MslI CAYNNNNRTG 4 cut(s) 449, 1730, 2150, 2197
MspA1I CMGCKG 2 cut(s) 371, 2431
MspI CCGG 4 cut(s) 690, 754, 2509, 2624
MspR9I CCNGG 6 cut(s) 161, 754, 1173, 1551, 2249, 2509
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 4 cut(s) 161, 1173, 1551, 2249
MvnI CGCG 1 cut(s) 2431
NciI CCSGG 2 cut(s) 754, 2509
NcoI CCATGG 2 cut(s) 1891, 2043
NdeI CATATG 2 cut(s) 1329, 2611
NmuCI GTSAC 2 cut(s) 631, 658
NspI RCATGY 2 cut(s) 479, 2056
NspV TTCGAA 1 cut(s) 458
PaeI GCATGC 1 cut(s) 479
PagI TCATGA 1 cut(s) 387
PaqCI CACCTGC 1 cut(s) 16
PceI AGGCCT 1 cut(s) 649
PciI ACATGT 1 cut(s) 2052
PdmI GAANNNNTTC 1 cut(s) 2625
PfeI GAWTC 3 cut(s) 277, 2632, 2671
PflMI CCANNNNNTGG 1 cut(s) 1389
PfoI TCCNGGA 3 cut(s) 1171, 2247, 2507
PinAI ACCGGT 1 cut(s) 2623
PleI GAGTC 3 cut(s) 1881, 1912, 2149
PpsI GAGTC 3 cut(s) 1881, 1912, 2149
PpuMI RGGWCCY 1 cut(s) 2338
PscI ACATGT 1 cut(s) 2052
Psp124BI GAGCTC 1 cut(s) 810
Psp5II RGGWCCY 1 cut(s) 2338
Psp6I CCWGG 4 cut(s) 159, 1171, 1549, 2247
PspGI CCWGG 4 cut(s) 159, 1171, 1549, 2247
PspPI GGNCC 6 cut(s) 1572, 1596, 1720, 2234, 2338, 2441
PspPPI RGGWCCY 1 cut(s) 2338
PstI CTGCAG 2 cut(s) 13, 1003
PsuI RGATCY 5 cut(s) 382, 610, 666, 1056, 1924
RsaI GTAC 4 cut(s) 1558, 1568, 1759, 2191
RsaNI GTAC 4 cut(s) 1557, 1567, 1758, 2190
RseI CAYNNNNRTG 4 cut(s) 449, 1730, 2150, 2197
SacI GAGCTC 1 cut(s) 810
SacII CCGCGG 1 cut(s) 2432
Sau96I GGNCC 6 cut(s) 1572, 1596, 1720, 2234, 2338, 2441
SchI GAGTC 3 cut(s) 1881, 1913, 2149
ScrFI CCNGG 6 cut(s) 161, 754, 1173, 1551, 2249, 2509
SduI GDGCHC 5 cut(s) 94, 810, 832, 1408, 1976
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 4 cut(s) 333, 871, 903, 1186
SfcI CTRYAG 3 cut(s) 9, 999, 1275
Sfr303I CCGCGG 1 cut(s) 2432
SfuI TTCGAA 1 cut(s) 458
SgrBI CCGCGG 1 cut(s) 2432
SinI GGWCC 5 cut(s) 1572, 1720, 2234, 2338, 2441
SmiMI CAYNNNNRTG 4 cut(s) 449, 1730, 2150, 2197
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SpeI ACTAGT 1 cut(s) 824
SphI GCATGC 1 cut(s) 479
SseBI AGGCCT 1 cut(s) 649
SspMI CTAG 9 cut(s) 72, 575, 654, 825, 888, 945, 989, 1688, 2142
SstI GAGCTC 1 cut(s) 810
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 6 cut(s) 159, 752, 1171, 1549, 2247, 2507
StyI CCWWGG 5 cut(s) 83, 1891, 2043, 2106, 2384
TaaI ACNGT 4 cut(s) 169, 232, 1243, 2473
TaiI ACGT 1 cut(s) 319
TaqI TCGA 7 cut(s) 210, 310, 458, 1798, 2482, 2556, 2641
TatI WGTACW 2 cut(s) 1556, 1566
TauI GCSGC 4 cut(s) 734, 961, 1622, 2182
TfiI GAWTC 3 cut(s) 277, 2632, 2671
TscAI CASTG 5 cut(s) 102, 1008, 1299, 1833, 2189
TseFI GTSAC 2 cut(s) 631, 658
TseI GCWGC 7 cut(s) 371, 472, 916, 998, 1541, 1964, 2581
Tsp45I GTSAC 2 cut(s) 631, 658
TspGWI ACGGA 4 cut(s) 392, 395, 659, 677
TspRI CASTG 5 cut(s) 102, 1008, 1299, 1833, 2189
Van91I CCANNNNNTGG 1 cut(s) 1389
VpaK11BI GGWCC 5 cut(s) 1572, 1720, 2234, 2338, 2441
XapI RAATTY 6 cut(s) 463, 1735, 1943, 2098, 2114, 2225
XceI RCATGY 2 cut(s) 479, 2056
XmnI GAANNNNTTC 1 cut(s) 2625
XspI CTAG 9 cut(s) 72, 575, 654, 825, 888, 945, 989, 1688, 2142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.