FvH4_6g16342

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Forward (+)
10274341 .. 10277793
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16342.t1

Sequence Viewer

Length: 3321 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCATTGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTATGAGGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAAATGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACCTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCATGAATGTTGAGGATGCGCTGAATATGTCGTGGGAACAGTTTAAGACTCTTTTCTTGGGGCAATATTTCAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCTGTTCATGCAGCTATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGATCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCATCTAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTTTTTAGTGGCTGTGAAGTGGTAGTGGAAGGAGTTATTTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTCCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAACTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGAATTCGAGAGGGTGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGACATTTTGGTTTACTCAAGAAAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCTACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTATGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAGAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATTGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1107

Amino Acids

123.91

Weight (kDa)

8.82

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 3.1e-14 Retrotransposon gag protein
RVP_2 PF08284 372 - 502 1.3e-31 Retroviral aspartyl protease
RVT_1 PF00078 633 - 767 1.5e-25 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 812 - 906 3e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 838 - 936 8.4e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1051 - 1105 3.5e-19 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 802, 1111
Acc36I ACCTGC 2 cut(s) 820, 2339
AccB1I GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1913, 2015
AccB7I CCANNNNNTGG 1 cut(s) 2281
AccII CGCG 2 cut(s) 1122, 2162
AccIII TCCGGA 2 cut(s) 1684, 2506
AclWI GGATC 8 cut(s) 123, 680, 772, 1217, 1994, 2181, 2264, 2277
AcoI YGGCCR 3 cut(s) 636, 668, 3257
AcsI RAATTY 2 cut(s) 420, 2067
AcuI CTGAAG 3 cut(s) 714, 943, 1011
AcyI GRCGYC 4 cut(s) 13, 799, 1108, 1781
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 1159, 1183
AfiI CCNNNNNNNGG 6 cut(s) 695, 979, 1150, 2281, 2418, 2624
AgsI TTSAA 9 cut(s) 181, 1810, 1819, 2382, 2462, 2470, 2614, 3163, 3241
AjiI CACGTC 1 cut(s) 2552
AjnI CCWGG 5 cut(s) 291, 536, 1053, 1708, 2830
Alw21I GWGCWC 5 cut(s) 124, 248, 667, 1885, 2491
Alw26I GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2680, 2767
AlwI GGATC 8 cut(s) 123, 680, 772, 1217, 1994, 2181, 2264, 2277
Aor13HI TCCGGA 2 cut(s) 1684, 2506
AoxI GGCC 5 cut(s) 636, 668, 1859, 2993, 3257
ApoI RAATTY 2 cut(s) 420, 2067
Asp700I GAANNNNTTC 3 cut(s) 898, 1662, 1752
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 5 cut(s) 15, 349, 1124, 1783, 2364
AspS9I GGNCC 4 cut(s) 194, 534, 698, 990
AsuC2I CCSGG 4 cut(s) 844, 1227, 1758, 3213
AsuHPI GGTGA 6 cut(s) 283, 695, 1337, 1342, 2090, 2143
AsuII TTCGAA 2 cut(s) 1501, 3068
AvaII GGWCC 4 cut(s) 194, 534, 698, 990
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1698
BaeGI GKGCMC 2 cut(s) 562, 1054
BalI TGGCCA 2 cut(s) 638, 3259
BamHI GGATCC 1 cut(s) 2269
BanI GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1913, 2015
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 1482, 1514
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 4 cut(s) 1017, 1826, 2311, 2729
Bbv12I GWGCWC 5 cut(s) 124, 248, 667, 1885, 2491
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 4 cut(s) 1136, 1170, 2564, 2598
BciT130I CCWGG 5 cut(s) 293, 538, 1055, 1710, 2832
BciVI GTATCC 1 cut(s) 1624
BclI TGATCA 1 cut(s) 2002
BcnI CCSGG 4 cut(s) 844, 1227, 1758, 3213
BcoDI GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2680, 2767
BfmI CTRYAG 4 cut(s) 1668, 1743, 1829, 2934
BfoI RGCGCY 3 cut(s) 16, 1784, 2365
BfuAI ACCTGC 2 cut(s) 820, 2339
BfuI GTATCC 1 cut(s) 1624
BglI GCCNNNNNGGC 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 8
Bme1390I CCNGG 9 cut(s) 293, 538, 844, 1055, 1227, 1710, 1758, 2832, 3213
Bme18I GGWCC 4 cut(s) 194, 534, 698, 990
BmgBI CACGTC 1 cut(s) 2552
BmgT120I GGNCC 4 cut(s) 194, 534, 698, 990
BmrFI CCNGG 9 cut(s) 293, 538, 844, 1055, 1227, 1710, 1758, 2832, 3213
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 6 cut(s) 193, 334, 2124, 2530, 2562, 2845
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 4 cut(s) 1017, 1826, 2311, 2729
BplI GAGNNNNNCTC 2 cut(s) 979, 1011
BpmI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 1869, 2669
Bpu10I CCTNAGC 2 cut(s) 101, 497
Bpu14I TTCGAA 2 cut(s) 1501, 3068
BpuEI CTTGAG 2 cut(s) 2233, 2660
BpuMI CCSGG 4 cut(s) 844, 1227, 1758, 3213
Bsa29I ATCGAT 1 cut(s) 1989
BsaHI GRCGYC 4 cut(s) 13, 799, 1108, 1781
BsaI GGTCTC 1 cut(s) 802
BsaWI WCCGGW 3 cut(s) 1322, 1684, 2506
BsaXI ACNNNNNCTCC 6 cut(s) 2250, 2280, 2473, 2503, 2511, 2541
Bsc4I CCNNNNNNNGG 6 cut(s) 695, 979, 1150, 2281, 2418, 2624
Bse1I ACTGG 7 cut(s) 81, 317, 690, 823, 1886, 2979, 2996
Bse21I CCTNAGG 1 cut(s) 1698
BseAI TCCGGA 2 cut(s) 1684, 2506
BseBI CCWGG 5 cut(s) 293, 538, 1055, 1710, 2832
BseCI ATCGAT 1 cut(s) 1989
BseLI CCNNNNNNNGG 6 cut(s) 695, 979, 1150, 2281, 2418, 2624
BseMII CTCAG 8 cut(s) 92, 488, 998, 1022, 1097, 1689, 1790, 2768
BseNI ACTGG 7 cut(s) 81, 317, 690, 823, 1886, 2979, 2996
BseRI GAGGAG 2 cut(s) 1715, 2385
BseSI GKGCMC 2 cut(s) 562, 1054
BseYI CCCAGC 1 cut(s) 1143
Bsh1236I CGCG 2 cut(s) 1122, 2162
BshFI GGCC 5 cut(s) 638, 670, 1861, 2995, 3259
BshNI GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1913, 2015
BshVI ATCGAT 1 cut(s) 1989
BsiHKAI GWGCWC 5 cut(s) 124, 248, 667, 1885, 2491
BsiSI CCGG 7 cut(s) 843, 1227, 1323, 1685, 1758, 2507, 3212
BslFI GGGAC 5 cut(s) 87, 207, 892, 1095, 3124
BslI CCNNNNNNNGG 6 cut(s) 695, 979, 1150, 2281, 2418, 2624
BsmAI GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2680, 2767
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 5 cut(s) 87, 207, 892, 1095, 3124
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 5 cut(s) 638, 670, 1861, 2995, 3259
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 2 cut(s) 1501, 3068
Bsp1286I GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 1885, 2491
Bsp13I TCCGGA 2 cut(s) 1684, 2506
Bsp19I CCATGG 2 cut(s) 871, 1874
BspANI GGCC 5 cut(s) 638, 670, 1861, 2995, 3259
BspCNI CTCAG 8 cut(s) 93, 489, 997, 1021, 1096, 1690, 1789, 2767
BspDI ATCGAT 1 cut(s) 1989
BspEI TCCGGA 2 cut(s) 1684, 2506
BspFNI CGCG 2 cut(s) 1122, 2162
BspHI TCATGA 3 cut(s) 949, 2178, 2641
BspMAI CTGCAG 1 cut(s) 1833
BspMI ACCTGC 2 cut(s) 820, 2339
BspPI GGATC 8 cut(s) 123, 680, 772, 1217, 1994, 2181, 2264, 2277
BspT104I TTCGAA 2 cut(s) 1501, 3068
BspT107I GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1913, 2015
BspTNI GGTCTC 1 cut(s) 802
BsrI ACTGG 7 cut(s) 81, 317, 690, 823, 1886, 2979, 2996
BssNI GRCGYC 4 cut(s) 13, 799, 1108, 1781
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 5 cut(s) 8, 189, 871, 1531, 1874
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 5 cut(s) 293, 538, 1055, 1710, 2832
Bst4CI ACNGT 4 cut(s) 369, 1960, 2317, 3027
Bst6I CTCTTC 5 cut(s) 443, 3097, 3150, 3158, 3263
BstACI GRCGYC 4 cut(s) 13, 799, 1108, 1781
BstAPI GCANNNNNTGC 1 cut(s) 3203
BstBI TTCGAA 2 cut(s) 1501, 3068
BstC8I GCNNGC 7 cut(s) 324, 328, 1134, 1206, 2450, 2655, 2931
BstDEI CTNAG 9 cut(s) 101, 497, 984, 1008, 1083, 1698, 1776, 2754, 2861
BstDSI CCRYGG 4 cut(s) 17, 871, 1874, 2160
BstFNI CGCG 2 cut(s) 1122, 2162
BstH2I RGCGCY 3 cut(s) 16, 1784, 2365
BstHHI GCGC 5 cut(s) 15, 349, 1124, 1783, 2364
BstMAI GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2680, 2767
BstNI CCWGG 5 cut(s) 293, 538, 1055, 1710, 2832
BstNSI RCATGY 3 cut(s) 1136, 1310, 1870
BstSCI CCNGG 9 cut(s) 291, 536, 842, 1053, 1225, 1708, 1756, 2830, 3211
BstSFI CTRYAG 4 cut(s) 1668, 1743, 1829, 2934
BstSLI GKGCMC 2 cut(s) 562, 1054
BstUI CGCG 2 cut(s) 1122, 2162
BstV2I GAAGAC 4 cut(s) 1017, 1826, 2311, 2729
BstX2I RGATCY 2 cut(s) 2173, 2269
BstYI RGATCY 2 cut(s) 2173, 2269
Bsu15I ATCGAT 1 cut(s) 1989
Bsu36I CCTNAGG 1 cut(s) 1698
BsuI GTATCC 1 cut(s) 1624
BsuRI GGCC 5 cut(s) 638, 670, 1861, 2995, 3259
BsuTUI ATCGAT 1 cut(s) 1989
BtgI CCRYGG 4 cut(s) 17, 871, 1874, 2160
BtgZI GCGATG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 2552
BtsI GCAGTG 2 cut(s) 1066, 2295
BtsIMutI CAGTG 9 cut(s) 310, 1066, 1893, 1965, 2295, 2313, 2450, 2806, 2958
BveI ACCTGC 2 cut(s) 820, 2339
Cac8I GCNNGC 7 cut(s) 324, 328, 1134, 1206, 2450, 2655, 2931
CciI TCATGA 3 cut(s) 949, 2178, 2641
CfoI GCGC 5 cut(s) 15, 349, 1124, 1783, 2364
Cfr13I GGNCC 4 cut(s) 194, 534, 698, 990
Cfr42I CCGCGG 1 cut(s) 2163
ClaI ATCGAT 1 cut(s) 1989
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 1158, 1182
CviQI GTAC 2 cut(s) 1158, 1182
DdeI CTNAG 9 cut(s) 101, 497, 984, 1008, 1083, 1698, 1776, 2754, 2861
DinI GGCGCC 2 cut(s) 14, 1782
DraI TTTAAA 1 cut(s) 3124
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 3 cut(s) 636, 668, 3257
Eam1104I CTCTTC 5 cut(s) 443, 3097, 3150, 3158, 3263
EarI CTCTTC 5 cut(s) 443, 3097, 3150, 3158, 3263
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 5 cut(s) 8, 189, 871, 1531, 1874
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 4 cut(s) 194, 534, 698, 990
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 3 cut(s) 714, 943, 1011
Eco81I CCTNAGG 1 cut(s) 1698
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 2 cut(s) 420, 2067
EcoRII CCWGG 5 cut(s) 291, 536, 1053, 1708, 2830
EcoT14I CCWWGG 5 cut(s) 8, 189, 871, 1531, 1874
EcoT22I ATGCAT 1 cut(s) 1931
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 2 cut(s) 14, 1782
EheI GGCGCC 2 cut(s) 14, 1782
ErhI CCWWGG 5 cut(s) 8, 189, 871, 1531, 1874
Esp3I CGTCTC 1 cut(s) 1293
FalI AAGNNNNNCTT 2 cut(s) 2462, 2494
FaqI GGGAC 5 cut(s) 87, 207, 892, 1095, 3124
FauI CCCGC 3 cut(s) 1080, 2167, 3009
FauNDI CATATG 1 cut(s) 3199
FbaI TGATCA 1 cut(s) 2002
FriOI GRGCYC 1 cut(s) 124
GlaI GCGC 5 cut(s) 14, 348, 1123, 1782, 2363
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 1869, 2669
HaeII RGCGCY 3 cut(s) 16, 1784, 2365
HaeIII GGCC 5 cut(s) 638, 670, 1861, 2995, 3259
HapII CCGG 7 cut(s) 843, 1227, 1323, 1685, 1758, 2507, 3212
HgaI GACGC 1 cut(s) 626
HhaI GCGC 5 cut(s) 15, 349, 1124, 1783, 2364
Hin1I GRCGYC 4 cut(s) 13, 799, 1108, 1781
Hin6I GCGC 5 cut(s) 13, 347, 1122, 1781, 2362
HinP1I GCGC 5 cut(s) 13, 347, 1122, 1781, 2362
HincII GTYRAC 1 cut(s) 2409
HindII GTYRAC 1 cut(s) 2409
HindIII AAGCTT 1 cut(s) 234
HpaII CCGG 7 cut(s) 843, 1227, 1323, 1685, 1758, 2507, 3212
HphI GGTGA 6 cut(s) 283, 695, 1337, 1342, 2090, 2143
Hpy166II GTNNAC 5 cut(s) 220, 1106, 2245, 2409, 2751
Hpy8I GTNNAC 5 cut(s) 220, 1106, 2245, 2409, 2751
HpyAV CCTTC 7 cut(s) 50, 262, 298, 455, 786, 1370, 3235
HpyCH4III ACNGT 4 cut(s) 369, 1960, 2317, 3027
HpyCH4IV ACGT 4 cut(s) 799, 1108, 1184, 2551
HpyF3I CTNAG 9 cut(s) 101, 497, 984, 1008, 1083, 1698, 1776, 2754, 2861
HpySE526I ACGT 4 cut(s) 799, 1108, 1184, 2551
Hsp92I GRCGYC 4 cut(s) 13, 799, 1108, 1781
HspAI GCGC 5 cut(s) 13, 347, 1122, 1781, 2362
KasI GGCGCC 2 cut(s) 12, 1780
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 2 cut(s) 1684, 2506
Ksp22I TGATCA 1 cut(s) 2002
KspI CCGCGG 1 cut(s) 2163
LweI GCATC 6 cut(s) 193, 334, 2124, 2530, 2562, 2845
MaeII ACGT 4 cut(s) 799, 1108, 1184, 2551
MaeIII GTNAC 6 cut(s) 283, 800, 1954, 2078, 2103, 2317
MfeI CAATTG 1 cut(s) 2609
MflI RGATCY 2 cut(s) 2173, 2269
MhlI GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 1885, 2491
MlsI TGGCCA 2 cut(s) 638, 3259
MluNI TGGCCA 2 cut(s) 638, 3259
Mly113I GGCGCC 2 cut(s) 13, 1781
MlyI GAGTC 6 cut(s) 370, 653, 1111, 1816, 2743, 3106
Mox20I TGGCCA 2 cut(s) 638, 3259
Mph1103I ATGCAT 1 cut(s) 1931
MroI TCCGGA 2 cut(s) 1684, 2506
MroXI GAANNNNTTC 3 cut(s) 898, 1662, 1752
MscI TGGCCA 2 cut(s) 638, 3259
MseI TTAA 8 cut(s) 372, 1217, 1400, 1899, 2424, 2766, 2795, 3123
MslI CAYNNNNRTG 2 cut(s) 1272, 3224
Msp20I TGGCCA 2 cut(s) 638, 3259
MspA1I CMGCKG 6 cut(s) 743, 1031, 1087, 1571, 1802, 2162
MspI CCGG 7 cut(s) 843, 1227, 1323, 1685, 1758, 2507, 3212
MspR9I CCNGG 9 cut(s) 293, 538, 844, 1055, 1227, 1710, 1758, 2832, 3213
MunI CAATTG 1 cut(s) 2609
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 5 cut(s) 293, 538, 1055, 1710, 2832
MvnI CGCG 2 cut(s) 1122, 2162
NarI GGCGCC 2 cut(s) 13, 1781
NciI CCSGG 4 cut(s) 844, 1227, 1758, 3213
NcoI CCATGG 2 cut(s) 871, 1874
NdeI CATATG 1 cut(s) 3199
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 5 cut(s) 800, 1954, 2078, 2103, 2317
NsiI ATGCAT 1 cut(s) 1931
NspI RCATGY 3 cut(s) 1136, 1310, 1870
NspV TTCGAA 2 cut(s) 1501, 3068
PaeI GCATGC 1 cut(s) 1136
PagI TCATGA 3 cut(s) 949, 2178, 2641
PasI CCCWGGG 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 3 cut(s) 898, 1662, 1752
PfeI GAWTC 5 cut(s) 299, 486, 1948, 2326, 3035
PflFI GACNNNGTC 1 cut(s) 2553
PflMI CCANNNNNTGG 1 cut(s) 2281
PfoI TCCNGGA 4 cut(s) 291, 1225, 1756, 2830
PleI GAGTC 6 cut(s) 370, 652, 1111, 1816, 2742, 3106
PluTI GGCGCC 2 cut(s) 16, 1784
PpsI GAGTC 6 cut(s) 370, 652, 1111, 1816, 2742, 3106
PpuMI RGGWCCY 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 5 cut(s) 291, 536, 1053, 1708, 2830
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 5 cut(s) 291, 536, 1053, 1708, 2830
PspPI GGNCC 4 cut(s) 194, 534, 698, 990
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 1833
PsuI RGATCY 2 cut(s) 2173, 2269
PsyI GACNNNGTC 1 cut(s) 2553
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 2 cut(s) 1159, 1183
RsaNI GTAC 2 cut(s) 1158, 1182
RseI CAYNNNNRTG 2 cut(s) 1272, 3224
SacI GAGCTC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 2163
SaqAI TTAA 8 cut(s) 372, 1217, 1400, 1899, 2424, 2766, 2795, 3123
Sau96I GGNCC 4 cut(s) 194, 534, 698, 990
SchI GAGTC 6 cut(s) 370, 653, 1111, 1816, 2743, 3106
ScrFI CCNGG 9 cut(s) 293, 538, 844, 1055, 1227, 1710, 1758, 2832, 3213
SduI GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 1885, 2491
SfaNI GCATC 6 cut(s) 193, 334, 2124, 2530, 2562, 2845
SfcI CTRYAG 4 cut(s) 1668, 1743, 1829, 2934
SfoI GGCGCC 2 cut(s) 14, 1782
Sfr303I CCGCGG 1 cut(s) 2163
SfuI TTCGAA 2 cut(s) 1501, 3068
SgrBI CCGCGG 1 cut(s) 2163
SinI GGWCC 4 cut(s) 194, 534, 698, 990
SmiMI CAYNNNNRTG 2 cut(s) 1272, 3224
SmlI CTYRAG 2 cut(s) 2248, 2675
SmoI CTYRAG 2 cut(s) 2248, 2675
SphI GCATGC 1 cut(s) 1136
SspDI GGCGCC 2 cut(s) 12, 1780
SspI AATATT 1 cut(s) 395
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 9 cut(s) 291, 536, 842, 1053, 1225, 1708, 1756, 2830, 3211
StyI CCWWGG 5 cut(s) 8, 189, 871, 1531, 1874
TaaI ACNGT 4 cut(s) 369, 1960, 2317, 3027
TaiI ACGT 4 cut(s) 802, 1111, 1187, 2554
TaqII GACCGA 2 cut(s) 1057, 2091
TauI GCSGC 3 cut(s) 2165, 2620, 3080
TfiI GAWTC 5 cut(s) 299, 486, 1948, 2326, 3035
Tru1I TTAA 8 cut(s) 372, 1217, 1400, 1899, 2424, 2766, 2795, 3123
Tru9I TTAA 8 cut(s) 372, 1217, 1400, 1899, 2424, 2766, 2795, 3123
TscAI CASTG 9 cut(s) 317, 1066, 1893, 1965, 2295, 2320, 2450, 2806, 2958
TseFI GTSAC 5 cut(s) 800, 1954, 2078, 2103, 2317
Tsp45I GTSAC 5 cut(s) 800, 1954, 2078, 2103, 2317
TspGWI ACGGA 2 cut(s) 1965, 2336
TspRI CASTG 9 cut(s) 317, 1066, 1893, 1965, 2295, 2320, 2450, 2806, 2958
Tth111I GACNNNGTC 1 cut(s) 2553
Van91I CCANNNNNTGG 1 cut(s) 2281
VpaK11BI GGWCC 4 cut(s) 194, 534, 698, 990
XapI RAATTY 2 cut(s) 420, 2067
XbaI TCTAGA 1 cut(s) 2546
XceI RCATGY 3 cut(s) 1136, 1310, 1870
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 3 cut(s) 898, 1662, 1752
ZraI GACGTC 2 cut(s) 800, 1109
Zsp2I ATGCAT 1 cut(s) 1931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.