FvH4_3g18622

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Forward (+)
11922581 .. 11925564
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18622.t1

Sequence Viewer

Length: 2814 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTTATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATTAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCGGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAATCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGAGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCTGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTAGTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGAATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCTGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCATAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTACGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAAGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTTATAGATGACATTTTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTTGAGGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTATGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCAATCACAAGAGTCTTCGTATCATCCTGGAAAAGCTAATGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

938

Amino Acids

104.45

Weight (kDa)

9.02

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 343 - 473 9.1e-34 Retroviral aspartyl protease
RVT_1 PF00078 604 - 764 2.7e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 827 - 921 2.4e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 853 - 933 5.5e-25 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 715, 1024
Acc36I ACCTGC 2 cut(s) 733, 2384
AccB1I GGYRCC 6 cut(s) 12, 185, 962, 1693, 1826, 1928
AccII CGCG 3 cut(s) 533, 1035, 2075
AccIII TCCGGA 2 cut(s) 1597, 2551
AclWI GGATC 9 cut(s) 123, 685, 1130, 1907, 1975, 1988, 2094, 2309, 2322
AcoI YGGCCR 2 cut(s) 549, 581
AcsI RAATTY 2 cut(s) 333, 2036
AcuI CTGAAG 3 cut(s) 627, 856, 924
AcyI GRCGYC 4 cut(s) 13, 712, 1021, 1694
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 2 cut(s) 1072, 1096
AfiI CCNNNNNNNGG 6 cut(s) 608, 892, 1063, 1990, 2463, 2669
AgsI TTSAA 9 cut(s) 161, 181, 1397, 1723, 1732, 2427, 2507, 2515, 2659
AjiI CACGTC 1 cut(s) 2597
AjnI CCWGG 7 cut(s) 291, 449, 966, 1207, 1621, 1669, 2793
AleI CACNNNNGTG 1 cut(s) 2360
Alw21I GWGCWC 5 cut(s) 124, 248, 580, 1798, 2536
Alw26I GTCTC 6 cut(s) 715, 1206, 1230, 1788, 1828, 2725
AlwI GGATC 9 cut(s) 123, 685, 1130, 1907, 1975, 1988, 2094, 2309, 2322
Aor13HI TCCGGA 2 cut(s) 1597, 2551
AoxI GGCC 3 cut(s) 549, 581, 1772
ApeKI GCWGC 9 cut(s) 327, 542, 748, 823, 826, 829, 1490, 2620, 2702
ApoI RAATTY 2 cut(s) 333, 2036
Asp700I GAANNNNTTC 3 cut(s) 811, 1575, 1665
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 4 cut(s) 15, 1037, 1696, 2409
AspS9I GGNCC 5 cut(s) 194, 447, 599, 611, 903
AsuC2I CCSGG 2 cut(s) 757, 1140
AsuHPI GGTGA 4 cut(s) 283, 1250, 1255, 2056
AsuII TTCGAA 1 cut(s) 1414
AvaII GGWCC 5 cut(s) 194, 447, 599, 611, 903
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1611
BaeGI GKGCMC 2 cut(s) 475, 967
BalI TGGCCA 1 cut(s) 551
BamHI GGATCC 2 cut(s) 1980, 2314
BanI GGYRCC 6 cut(s) 12, 185, 962, 1693, 1826, 1928
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 1395, 1427
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 4 cut(s) 930, 1739, 2356, 2774
Bbv12I GWGCWC 5 cut(s) 124, 248, 580, 1798, 2536
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 9 cut(s) 339, 554, 760, 835, 838, 841, 1477, 2632, 2714
BccI CCATC 7 cut(s) 271, 330, 448, 622, 1201, 1418, 1817
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 4 cut(s) 1049, 1083, 2609, 2643
BciT130I CCWGG 7 cut(s) 293, 451, 968, 1209, 1623, 1671, 2795
BciVI GTATCC 1 cut(s) 1537
BclI TGATCA 1 cut(s) 1915
BcnI CCSGG 2 cut(s) 757, 1140
BcoDI GTCTC 6 cut(s) 715, 1206, 1230, 1788, 1828, 2725
BfmI CTRYAG 2 cut(s) 1581, 1656
BfoI RGCGCY 3 cut(s) 16, 1697, 2410
BfuAI ACCTGC 2 cut(s) 733, 2384
BfuI GTATCC 1 cut(s) 1537
BglI GCCNNNNNGGC 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 8
Bme1390I CCNGG 9 cut(s) 293, 451, 757, 968, 1140, 1209, 1623, 1671, 2795
Bme18I GGWCC 5 cut(s) 194, 447, 599, 611, 903
BmgBI CACGTC 1 cut(s) 2597
BmgT120I GGNCC 5 cut(s) 194, 447, 599, 611, 903
BmrFI CCNGG 9 cut(s) 293, 451, 757, 968, 1140, 1209, 1623, 1671, 2795
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 5 cut(s) 193, 2037, 2197, 2575, 2607
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 4 cut(s) 930, 1739, 2356, 2774
BplI GAGNNNNNCTC 2 cut(s) 892, 924
BpmI CTGGAG 5 cut(s) 186, 966, 1062, 1695, 2714
Bpu10I CCTNAGC 2 cut(s) 101, 410
Bpu14I TTCGAA 1 cut(s) 1414
BpuEI CTTGAG 2 cut(s) 2146, 2705
BpuMI CCSGG 2 cut(s) 757, 1140
Bsa29I ATCGAT 1 cut(s) 1902
BsaHI GRCGYC 4 cut(s) 13, 712, 1021, 1694
BsaI GGTCTC 1 cut(s) 715
BsaWI WCCGGW 3 cut(s) 1597, 1798, 2551
BsaXI ACNNNNNCTCC 6 cut(s) 2295, 2325, 2518, 2548, 2556, 2586
Bsc4I CCNNNNNNNGG 6 cut(s) 608, 892, 1063, 1990, 2463, 2669
Bse1I ACTGG 3 cut(s) 81, 603, 736
Bse21I CCTNAGG 1 cut(s) 1611
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1597, 2551
BseBI CCWGG 7 cut(s) 293, 451, 968, 1209, 1623, 1671, 2795
BseCI ATCGAT 1 cut(s) 1902
BseLI CCNNNNNNNGG 6 cut(s) 608, 892, 1063, 1990, 2463, 2669
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 7 cut(s) 92, 401, 911, 935, 1010, 1602, 1703
BseNI ACTGG 3 cut(s) 81, 603, 736
BseRI GAGGAG 2 cut(s) 1628, 2430
BseSI GKGCMC 2 cut(s) 475, 967
BseXI GCAGC 9 cut(s) 339, 554, 760, 835, 838, 841, 1477, 2632, 2714
BseYI CCCAGC 1 cut(s) 1056
Bsh1236I CGCG 3 cut(s) 533, 1035, 2075
BshFI GGCC 3 cut(s) 551, 583, 1774
BshNI GGYRCC 6 cut(s) 12, 185, 962, 1693, 1826, 1928
BshVI ATCGAT 1 cut(s) 1902
BsiHKAI GWGCWC 5 cut(s) 124, 248, 580, 1798, 2536
BsiSI CCGG 5 cut(s) 756, 1140, 1598, 1799, 2552
BslFI GGGAC 6 cut(s) 87, 207, 585, 805, 1008, 2006
BslI CCNNNNNNNGG 6 cut(s) 608, 892, 1063, 1990, 2463, 2669
BsmAI GTCTC 6 cut(s) 715, 1206, 1230, 1788, 1828, 2725
BsmBI CGTCTC 1 cut(s) 1206
BsmFI GGGAC 6 cut(s) 87, 207, 585, 805, 1008, 2006
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 3 cut(s) 551, 583, 1774
Bso31I GGTCTC 1 cut(s) 715
Bsp119I TTCGAA 1 cut(s) 1414
Bsp1286I GDGCHC 7 cut(s) 124, 248, 475, 580, 967, 1798, 2536
Bsp13I TCCGGA 2 cut(s) 1597, 2551
Bsp19I CCATGG 3 cut(s) 546, 784, 1787
BspANI GGCC 3 cut(s) 551, 583, 1774
BspCNI CTCAG 7 cut(s) 93, 402, 910, 934, 1009, 1603, 1702
BspDI ATCGAT 1 cut(s) 1902
BspEI TCCGGA 2 cut(s) 1597, 2551
BspFNI CGCG 3 cut(s) 533, 1035, 2075
BspHI TCATGA 3 cut(s) 862, 2091, 2686
BspMI ACCTGC 2 cut(s) 733, 2384
BspPI GGATC 9 cut(s) 123, 685, 1130, 1907, 1975, 1988, 2094, 2309, 2322
BspT104I TTCGAA 1 cut(s) 1414
BspT107I GGYRCC 6 cut(s) 12, 185, 962, 1693, 1826, 1928
BspTNI GGTCTC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 3 cut(s) 81, 603, 736
BssNI GRCGYC 4 cut(s) 13, 712, 1021, 1694
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 6 cut(s) 8, 189, 546, 784, 1444, 1787
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 7 cut(s) 293, 451, 968, 1209, 1623, 1671, 2795
Bst4CI ACNGT 2 cut(s) 314, 2362
Bst6I CTCTTC 2 cut(s) 356, 1209
BstACI GRCGYC 4 cut(s) 13, 712, 1021, 1694
BstBI TTCGAA 1 cut(s) 1414
BstC8I GCNNGC 5 cut(s) 1047, 1119, 2181, 2495, 2700
BstDEI CTNAG 9 cut(s) 101, 410, 897, 921, 996, 1611, 1689, 2192, 2235
BstDSI CCRYGG 5 cut(s) 17, 546, 784, 1787, 2073
BstFNI CGCG 3 cut(s) 533, 1035, 2075
BstH2I RGCGCY 3 cut(s) 16, 1697, 2410
BstHHI GCGC 4 cut(s) 15, 1037, 1696, 2409
BstMAI GTCTC 6 cut(s) 715, 1206, 1230, 1788, 1828, 2725
BstNI CCWGG 7 cut(s) 293, 451, 968, 1209, 1623, 1671, 2795
BstNSI RCATGY 4 cut(s) 1049, 1223, 1783, 2183
BstSCI CCNGG 9 cut(s) 291, 449, 755, 966, 1138, 1207, 1621, 1669, 2793
BstSFI CTRYAG 2 cut(s) 1581, 1656
BstSLI GKGCMC 2 cut(s) 475, 967
BstUI CGCG 3 cut(s) 533, 1035, 2075
BstV1I GCAGC 9 cut(s) 339, 554, 760, 835, 838, 841, 1477, 2632, 2714
BstV2I GAAGAC 4 cut(s) 930, 1739, 2356, 2774
BstX2I RGATCY 3 cut(s) 1980, 2086, 2314
BstXI CCANNNNNNTGG 1 cut(s) 1215
BstYI RGATCY 3 cut(s) 1980, 2086, 2314
Bsu15I ATCGAT 1 cut(s) 1902
Bsu36I CCTNAGG 1 cut(s) 1611
BsuI GTATCC 1 cut(s) 1537
BsuRI GGCC 3 cut(s) 551, 583, 1774
BsuTUI ATCGAT 1 cut(s) 1902
BtgI CCRYGG 5 cut(s) 17, 546, 784, 1787, 2073
BtgZI GCGATG 1 cut(s) 308
BtrI CACGTC 1 cut(s) 2597
BtsI GCAGTG 2 cut(s) 979, 2340
BtsIMutI CAGTG 5 cut(s) 310, 979, 2340, 2358, 2495
BveI ACCTGC 2 cut(s) 733, 2384
Cac8I GCNNGC 5 cut(s) 1047, 1119, 2181, 2495, 2700
CciI TCATGA 3 cut(s) 862, 2091, 2686
CfoI GCGC 4 cut(s) 15, 1037, 1696, 2409
Cfr13I GGNCC 5 cut(s) 194, 447, 599, 611, 903
Cfr42I CCGCGG 1 cut(s) 2076
ClaI ATCGAT 1 cut(s) 1902
CseI GACGC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 1071, 1095
CviQI GTAC 2 cut(s) 1071, 1095
DdeI CTNAG 9 cut(s) 101, 410, 897, 921, 996, 1611, 1689, 2192, 2235
DinI GGCGCC 2 cut(s) 14, 1695
DraIII CACNNNGTG 1 cut(s) 479
EaeI YGGCCR 2 cut(s) 549, 581
Eam1104I CTCTTC 2 cut(s) 356, 1209
EarI CTCTTC 2 cut(s) 356, 1209
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 6 cut(s) 8, 189, 546, 784, 1444, 1787
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 715
Eco47I GGWCC 5 cut(s) 194, 447, 599, 611, 903
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 3 cut(s) 627, 856, 924
Eco81I CCTNAGG 1 cut(s) 1611
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 7 cut(s) 291, 449, 966, 1207, 1621, 1669, 2793
EcoT14I CCWWGG 6 cut(s) 8, 189, 546, 784, 1444, 1787
EcoT22I ATGCAT 1 cut(s) 1844
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 2 cut(s) 14, 1695
EheI GGCGCC 2 cut(s) 14, 1695
ErhI CCWWGG 6 cut(s) 8, 189, 546, 784, 1444, 1787
Esp3I CGTCTC 1 cut(s) 1206
FalI AAGNNNNNCTT 2 cut(s) 2507, 2539
FaqI GGGAC 6 cut(s) 87, 207, 585, 805, 1008, 2006
FauI CCCGC 2 cut(s) 993, 2080
FbaI TGATCA 1 cut(s) 1915
FriOI GRGCYC 1 cut(s) 124
GlaI GCGC 4 cut(s) 14, 1036, 1695, 2408
GsaI CCCAGC 1 cut(s) 1060
GsuI CTGGAG 5 cut(s) 186, 966, 1062, 1695, 2714
HaeII RGCGCY 3 cut(s) 16, 1697, 2410
HaeIII GGCC 3 cut(s) 551, 583, 1774
HapII CCGG 5 cut(s) 756, 1140, 1598, 1799, 2552
HgaI GACGC 1 cut(s) 539
HhaI GCGC 4 cut(s) 15, 1037, 1696, 2409
Hin1I GRCGYC 4 cut(s) 13, 712, 1021, 1694
Hin6I GCGC 4 cut(s) 13, 1035, 1694, 2407
HinP1I GCGC 4 cut(s) 13, 1035, 1694, 2407
HincII GTYRAC 1 cut(s) 2454
HindII GTYRAC 1 cut(s) 2454
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 8 cut(s) 299, 399, 557, 1030, 1735, 1861, 2371, 2779
HpaII CCGG 5 cut(s) 756, 1140, 1598, 1799, 2552
HphI GGTGA 4 cut(s) 283, 1250, 1255, 2056
Hpy166II GTNNAC 4 cut(s) 220, 1019, 2158, 2454
Hpy188I TCNGA 8 cut(s) 343, 529, 900, 986, 1899, 1985, 2485, 2760
Hpy8I GTNNAC 4 cut(s) 220, 1019, 2158, 2454
HpyAV CCTTC 7 cut(s) 50, 262, 368, 699, 1283, 2167, 2294
HpyCH4III ACNGT 2 cut(s) 314, 2362
HpyCH4IV ACGT 4 cut(s) 712, 1021, 1097, 2596
HpyF3I CTNAG 9 cut(s) 101, 410, 897, 921, 996, 1611, 1689, 2192, 2235
HpySE526I ACGT 4 cut(s) 712, 1021, 1097, 2596
Hsp92I GRCGYC 4 cut(s) 13, 712, 1021, 1694
HspAI GCGC 4 cut(s) 13, 1035, 1694, 2407
KasI GGCGCC 2 cut(s) 12, 1693
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 2 cut(s) 1597, 2551
Ksp22I TGATCA 1 cut(s) 1915
KspI CCGCGG 1 cut(s) 2076
Lsp1109I GCAGC 9 cut(s) 339, 554, 760, 835, 838, 841, 1477, 2632, 2714
LweI GCATC 5 cut(s) 193, 2037, 2197, 2575, 2607
MaeII ACGT 4 cut(s) 712, 1021, 1097, 2596
MaeIII GTNAC 5 cut(s) 283, 713, 1974, 2016, 2362
MfeI CAATTG 2 cut(s) 1739, 2654
MflI RGATCY 3 cut(s) 1980, 2086, 2314
MhlI GDGCHC 7 cut(s) 124, 248, 475, 580, 967, 1798, 2536
MlsI TGGCCA 1 cut(s) 551
MluNI TGGCCA 1 cut(s) 551
Mly113I GGCGCC 2 cut(s) 13, 1694
MlyI GAGTC 4 cut(s) 566, 1024, 1729, 2788
Mox20I TGGCCA 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 1844
MroI TCCGGA 2 cut(s) 1597, 2551
MroXI GAANNNNTTC 3 cut(s) 811, 1575, 1665
MscI TGGCCA 1 cut(s) 551
MseI TTAA 6 cut(s) 357, 1130, 1296, 1313, 1812, 2469
MslI CAYNNNNRTG 2 cut(s) 1185, 2360
Msp20I TGGCCA 1 cut(s) 551
MspA1I CMGCKG 6 cut(s) 656, 944, 1000, 1484, 1715, 2075
MspI CCGG 5 cut(s) 756, 1140, 1598, 1799, 2552
MspR9I CCNGG 9 cut(s) 293, 451, 757, 968, 1140, 1209, 1623, 1671, 2795
MunI CAATTG 2 cut(s) 1739, 2654
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 7 cut(s) 293, 451, 968, 1209, 1623, 1671, 2795
MvnI CGCG 3 cut(s) 533, 1035, 2075
NarI GGCGCC 2 cut(s) 13, 1694
NciI CCSGG 2 cut(s) 757, 1140
NcoI CCATGG 3 cut(s) 546, 784, 1787
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 713, 2016, 2362
NsiI ATGCAT 1 cut(s) 1844
NspI RCATGY 4 cut(s) 1049, 1223, 1783, 2183
NspV TTCGAA 1 cut(s) 1414
OliI CACNNNNGTG 1 cut(s) 2360
PaeI GCATGC 2 cut(s) 1049, 2183
PagI TCATGA 3 cut(s) 862, 2091, 2686
PasI CCCWGGG 1 cut(s) 967
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 1150
PdmI GAANNNNTTC 3 cut(s) 811, 1575, 1665
PfeI GAWTC 4 cut(s) 299, 399, 1861, 2371
PflFI GACNNNGTC 1 cut(s) 2598
PfoI TCCNGGA 4 cut(s) 291, 1138, 1669, 2793
PleI GAGTC 4 cut(s) 565, 1024, 1729, 2787
PluTI GGCGCC 2 cut(s) 16, 1697
PpsI GAGTC 4 cut(s) 565, 1024, 1729, 2787
PpuMI RGGWCCY 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 7 cut(s) 291, 449, 966, 1207, 1621, 1669, 2793
PspFI CCCAGC 1 cut(s) 1056
PspGI CCWGG 7 cut(s) 291, 449, 966, 1207, 1621, 1669, 2793
PspPI GGNCC 5 cut(s) 194, 447, 599, 611, 903
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 3 cut(s) 1980, 2086, 2314
PsyI GACNNNGTC 1 cut(s) 2598
PvuII CAGCTG 2 cut(s) 656, 944
RsaI GTAC 2 cut(s) 1072, 1096
RsaNI GTAC 2 cut(s) 1071, 1095
RseI CAYNNNNRTG 2 cut(s) 1185, 2360
SacI GAGCTC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 2076
SaqAI TTAA 6 cut(s) 357, 1130, 1296, 1313, 1812, 2469
Sau96I GGNCC 5 cut(s) 194, 447, 599, 611, 903
SchI GAGTC 4 cut(s) 566, 1024, 1729, 2788
ScrFI CCNGG 9 cut(s) 293, 451, 757, 968, 1140, 1209, 1623, 1671, 2795
SduI GDGCHC 7 cut(s) 124, 248, 475, 580, 967, 1798, 2536
SfaNI GCATC 5 cut(s) 193, 2037, 2197, 2575, 2607
SfcI CTRYAG 2 cut(s) 1581, 1656
SfoI GGCGCC 2 cut(s) 14, 1695
Sfr303I CCGCGG 1 cut(s) 2076
SfuI TTCGAA 1 cut(s) 1414
SgrBI CCGCGG 1 cut(s) 2076
SinI GGWCC 5 cut(s) 194, 447, 599, 611, 903
SmiMI CAYNNNNRTG 2 cut(s) 1185, 2360
SmlI CTYRAG 2 cut(s) 2161, 2720
SmoI CTYRAG 2 cut(s) 2161, 2720
SphI GCATGC 2 cut(s) 1049, 2183
SspDI GGCGCC 2 cut(s) 12, 1693
SspI AATATT 2 cut(s) 355, 2202
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 9 cut(s) 291, 449, 755, 966, 1138, 1207, 1621, 1669, 2793
StyI CCWWGG 6 cut(s) 8, 189, 546, 784, 1444, 1787
TaaI ACNGT 2 cut(s) 314, 2362
TaiI ACGT 4 cut(s) 715, 1024, 1100, 2599
TaqI TCGA 7 cut(s) 41, 118, 1302, 1414, 1902, 2339, 2629
TaqII GACCGA 2 cut(s) 970, 2004
TauI GCSGC 2 cut(s) 2078, 2665
TfiI GAWTC 4 cut(s) 299, 399, 1861, 2371
Tru1I TTAA 6 cut(s) 357, 1130, 1296, 1313, 1812, 2469
Tru9I TTAA 6 cut(s) 357, 1130, 1296, 1313, 1812, 2469
TscAI CASTG 5 cut(s) 317, 979, 2340, 2365, 2495
TseFI GTSAC 3 cut(s) 713, 2016, 2362
TseI GCWGC 9 cut(s) 327, 542, 748, 823, 826, 829, 1490, 2620, 2702
Tsp45I GTSAC 3 cut(s) 713, 2016, 2362
TspGWI ACGGA 3 cut(s) 1878, 1993, 2381
TspRI CASTG 5 cut(s) 317, 979, 2340, 2365, 2495
Tth111I GACNNNGTC 1 cut(s) 2598
VpaK11BI GGWCC 5 cut(s) 194, 447, 599, 611, 903
XapI RAATTY 2 cut(s) 333, 2036
XbaI TCTAGA 1 cut(s) 2591
XceI RCATGY 4 cut(s) 1049, 1223, 1783, 2183
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 3 cut(s) 811, 1575, 1665
ZraI GACGTC 2 cut(s) 713, 1022
Zsp2I ATGCAT 1 cut(s) 1844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.