transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 3 - 69 | 5.9e-13 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 71 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 35 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AcsI | RAATTY | 1 cut(s) | 389 |
| AcuI | CTGAAG | 1 cut(s) | 237 |
| AfaI | GTAC | 1 cut(s) | 333 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 35, 328 |
| AflIII | ACRYGT | 1 cut(s) | 202 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 206 |
| AjnI | CCWGG | 1 cut(s) | 423 |
| AluBI | AGCT | 2 cut(s) | 297, 420 |
| AluI | AGCT | 2 cut(s) | 297, 420 |
| Alw26I | GTCTC | 2 cut(s) | 106, 214 |
| ApeKI | GCWGC | 1 cut(s) | 257 |
| ApoI | RAATTY | 1 cut(s) | 389 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 1 cut(s) | 432 |
| AvaII | GGWCC | 1 cut(s) | 232 |
| BauI | CACGAG | 1 cut(s) | 116 |
| BbsI | GAAGAC | 1 cut(s) | 411 |
| BbvI | GCAGC | 1 cut(s) | 269 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 373, 407 |
| BciT130I | CCWGG | 1 cut(s) | 425 |
| BcoDI | GTCTC | 2 cut(s) | 106, 214 |
| BisI | GCNGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 1 cut(s) | 259 |
| Bme1390I | CCNGG | 1 cut(s) | 425 |
| Bme18I | GGWCC | 1 cut(s) | 232 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 1 cut(s) | 234 |
| BmrFI | CCNGG | 1 cut(s) | 425 |
| BpiI | GAAGAC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 35, 328 |
| BseBI | CCWGG | 1 cut(s) | 425 |
| BseDI | CCNNGG | 1 cut(s) | 34 |
| BseGI | GGATG | 1 cut(s) | 406 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 35, 328 |
| BseMII | CTCAG | 1 cut(s) | 122 |
| BseXI | GCAGC | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 35, 328 |
| BsmAI | GTCTC | 2 cut(s) | 106, 214 |
| BspCNI | CTCAG | 1 cut(s) | 123 |
| BspLI | GGNNCC | 1 cut(s) | 234 |
| BssECI | CCNNGG | 1 cut(s) | 34 |
| BssSI | CACGAG | 1 cut(s) | 116 |
| BssT1I | CCWWGG | 1 cut(s) | 34 |
| Bst2BI | CACGAG | 1 cut(s) | 116 |
| Bst2UI | CCWGG | 1 cut(s) | 425 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 3 cut(s) | 81, 131, 307 |
| BstF5I | GGATG | 1 cut(s) | 406 |
| BstMAI | GTCTC | 2 cut(s) | 106, 214 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 98, 257, 303 |
| BstNI | CCWGG | 1 cut(s) | 425 |
| BstNSI | RCATGY | 2 cut(s) | 101, 206 |
| BstSCI | CCNGG | 1 cut(s) | 423 |
| BstV1I | GCAGC | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 1 cut(s) | 411 |
| BtsCI | GGATG | 1 cut(s) | 406 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| Csp6I | GTAC | 1 cut(s) | 332 |
| CviAII | CATG | 4 cut(s) | 98, 203, 385, 450 |
| CviJI | RGCY | 5 cut(s) | 39, 178, 297, 306, 420 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 178, 297, 306, 420 |
| CviQI | GTAC | 1 cut(s) | 332 |
| DdeI | CTNAG | 3 cut(s) | 81, 131, 307 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 71 |
| DriI | GACNNNNNGTC | 1 cut(s) | 206 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 71 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 1 cut(s) | 34 |
| Eco32I | GATATC | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 1 cut(s) | 237 |
| EcoRII | CCWGG | 1 cut(s) | 423 |
| EcoRV | GATATC | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 34 |
| ErhI | CCWWGG | 1 cut(s) | 34 |
| FaeI | CATG | 4 cut(s) | 101, 206, 388, 453 |
| FaiI | YATR | 6 cut(s) | 31, 99, 148, 204, 386, 451 |
| FatI | CATG | 4 cut(s) | 97, 202, 384, 449 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 1 cut(s) | 258 |
| FokI | GGATG | 1 cut(s) | 413 |
| Fsp4HI | GCNGC | 1 cut(s) | 258 |
| GluI | GCNGC | 1 cut(s) | 258 |
| Hin1II | CATG | 4 cut(s) | 101, 206, 388, 453 |
| HincII | GTYRAC | 1 cut(s) | 372 |
| HindII | GTYRAC | 1 cut(s) | 372 |
| HindIII | AAGCTT | 1 cut(s) | 295 |
| HinfI | GANTC | 1 cut(s) | 114 |
| HpaI | GTTAAC | 1 cut(s) | 372 |
| HphI | GGTGA | 1 cut(s) | 432 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 232, 372 |
| Hpy188I | TCNGA | 2 cut(s) | 26, 200 |
| Hpy188III | TCNNGA | 1 cut(s) | 471 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 232, 372 |
| Hpy99I | CGWCG | 1 cut(s) | 327 |
| HpyAV | CCTTC | 2 cut(s) | 212, 477 |
| HpyCH4IV | ACGT | 2 cut(s) | 279, 325 |
| HpyCH4V | TGCA | 1 cut(s) | 257 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 98, 257, 303 |
| HpyF3I | CTNAG | 3 cut(s) | 81, 131, 307 |
| HpySE526I | ACGT | 2 cut(s) | 279, 325 |
| Hsp92II | CATG | 4 cut(s) | 101, 206, 388, 453 |
| KspAI | GTTAAC | 1 cut(s) | 372 |
| LmnI | GCTCC | 1 cut(s) | 265 |
| LpnPI | CCDG | 4 cut(s) | 25, 287, 410, 437 |
| Lsp1109I | GCAGC | 1 cut(s) | 269 |
| MaeII | ACGT | 2 cut(s) | 279, 325 |
| MaeIII | GTNAC | 1 cut(s) | 280 |
| MboII | GAAGA | 1 cut(s) | 416 |
| MfeI | CAATTG | 1 cut(s) | 252 |
| MluCI | AATT | 6 cut(s) | 48, 170, 186, 252, 288, 389 |
| MlyI | GAGTC | 1 cut(s) | 108 |
| MmeI | TCCRAC | 1 cut(s) | 102 |
| MnlI | CCTC | 3 cut(s) | 82, 246, 360 |
| MseI | TTAA | 5 cut(s) | 8, 159, 291, 371, 431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 227 |
| MspR9I | CCNGG | 1 cut(s) | 425 |
| MunI | CAATTG | 1 cut(s) | 252 |
| MvaI | CCWGG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 98, 257, 303 |
| NlaIII | CATG | 4 cut(s) | 101, 206, 388, 453 |
| NlaIV | GGNNCC | 1 cut(s) | 234 |
| NmuCI | GTSAC | 1 cut(s) | 280 |
| NspI | RCATGY | 2 cut(s) | 101, 206 |
| PaeI | GCATGC | 1 cut(s) | 101 |
| PciI | ACATGT | 1 cut(s) | 202 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 35 |
| PfoI | TCCNGGA | 1 cut(s) | 423 |
| PkrI | GCNGC | 1 cut(s) | 259 |
| PleI | GAGTC | 1 cut(s) | 108 |
| PpsI | GAGTC | 1 cut(s) | 108 |
| PscI | ACATGT | 1 cut(s) | 202 |
| Psp6I | CCWGG | 1 cut(s) | 423 |
| PspGI | CCWGG | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 1 cut(s) | 234 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| RsaI | GTAC | 1 cut(s) | 333 |
| RsaNI | GTAC | 1 cut(s) | 332 |
| RseI | CAYNNNNRTG | 1 cut(s) | 227 |
| SaqAI | TTAA | 5 cut(s) | 8, 159, 291, 371, 431 |
| SatI | GCNGC | 1 cut(s) | 258 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SchI | GAGTC | 1 cut(s) | 108 |
| ScrFI | CCNGG | 1 cut(s) | 425 |
| SetI | ASST | 8 cut(s) | 36, 282, 299, 316, 328, 371, 422, 445 |
| SinI | GGWCC | 1 cut(s) | 232 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 227 |
| SphI | GCATGC | 1 cut(s) | 101 |
| Sse9I | AATT | 6 cut(s) | 48, 170, 186, 252, 288, 389 |
| StyD4I | CCNGG | 1 cut(s) | 423 |
| StyI | CCWWGG | 1 cut(s) | 34 |
| TaiI | ACGT | 2 cut(s) | 282, 328 |
| TaqI | TCGA | 1 cut(s) | 393 |
| TaqII | GACCGA | 1 cut(s) | 198 |
| TasI | AATT | 6 cut(s) | 48, 170, 186, 252, 288, 389 |
| Tru1I | TTAA | 5 cut(s) | 8, 159, 291, 371, 431 |
| Tru9I | TTAA | 5 cut(s) | 8, 159, 291, 371, 431 |
| TseFI | GTSAC | 1 cut(s) | 280 |
| TseI | GCWGC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 4 cut(s) | 26, 46, 401, 417 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 1 cut(s) | 232 |
| XapI | RAATTY | 1 cut(s) | 389 |
| XceI | RCATGY | 2 cut(s) | 101, 206 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 36 |
| XmiI | GTMKAC | 1 cut(s) | 75 |