RchiOBHm_Chr5g0078031

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000094
Physical Location & Seq
Forward (+)
83908605 .. 83910974
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35257

Sequence Viewer

Length: 1368 bp
ATGGTGACAACCTCAGATTCTACACTGTCTTCTGGTGCTATGATCCAAAATTATGTTGCTAATGATGTTGCTAGTGAGCTAGATAAGATGATCAGTCAACCACAACAGCATTTTCAGCATCAATATTATCAACACTCTGGTTTTGGCTCTCAGCCTTTTAATCACTTTGTTGGGCCCTTCACTGCTCCTTGTTCTAGTGGTTTTCAGTCTGCATTCCATTTGGCACCTACTACACATTATAGTGACACAGATCCATTCACTATGAGCTACTCAGGGCCATACCAGCATACTCCACTCAGTTTTCCACCACAACCCCAGTTATCACTACCATTTGCAGTACCTACTTACTTGAACATGCAGAACCCCACCCATACAACACCCCCATTCTCAACTGTGGCAAATCAGACTTCTCTTGCTCATCAGCATTACACTGTGCCCCATAGACCACCACCACAGTTTGGCTTCCAACAACAACCTCTCCAAAATTTTCAGCCACCCCAGGATGTCTTTCCTCTTCAACACATGCATCAGCCTCAACATCCATTTAACCATATTCAGACCTTGCCAACTATGAAACAGATGAAGCTTGATTTCCCCACCTTTAGTGGTGGTGACCCTATAGAATGGCTCAACAAGGCTGAGCAGTTCTTTGATTTTTATCAAATACCTGAAGACAGAAAGTTGGCTATTGCAGCCATGCACTTGGCTGATAAAGCTTCTGATAGGTGGTTTATGTTCAGACATGAGTTTCCACCAACTTGGCTTGGCTTAGCTGATCTTCTGATGAGGGAGTTTAGTGGACACAACCTCAGTGATTACCAGGCTGCCTTAGCAAGAATGAGCCAAACTGGTTCTGTGGAGCAATATATGGAGCAGTTCACAAAATTATCTAGAAGAGCACCTGGATTCTCTCAGCAAGTATTACTTTCTTGTTTTTTGGGAGGTCTTAAAGATGGCATCAGGGCAAATGTTAAAGCACAGAAACCTAGATCACTCTATGATGCTTATGAGTTTGCTAGGATATATGAAGAAAAAGAGAATTCTCACAGATCTCACATGAGGGTGCAATTGGGAGTTAGAACCACCTCTGCCCTCCCTCCTAGAGTGGCACAGACCAATCAATTGGGGGCTGCCAACAATGTTCCACGAGTTCATAATCCTCCTGCTCGAGCTCCTCCTCTCAATAATGTAGCAGGCGGGGGTCAAAATGGAGGAAACAGGAGGCTTTCACAAGCTGAATACCAAGAAAGGAGAGCCAGAAACCAGTGCTTCTTCTGTGATGAGATATTCAGACCTGGTCACAACTGTAGAAGAGGCCAGCTCATGCTTCTTAGTTACCGTATTCTTCAACAGAAACATTGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

455

Amino Acids

51.92

Weight (kDa)

9.11

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 217 - 343 7.8e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 230 - 317 4.3e-11 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 458
AciI CCGC 1 cut(s) 1197
AclWI GGATC 2 cut(s) 37, 245
AcsI RAATTY 2 cut(s) 484, 1039
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 3 cut(s) 352, 518, 1349
AjnI CCWGG 4 cut(s) 498, 819, 901, 1294
AluBI AGCT 8 cut(s) 79, 267, 586, 716, 773, 1172, 1235, 1321
AluI AGCT 8 cut(s) 79, 267, 586, 716, 773, 1172, 1235, 1321
Alw21I GWGCWC 2 cut(s) 901, 1174
AlwI GGATC 2 cut(s) 37, 245
Ama87I CYCGRG 1 cut(s) 1167
AoxI GGCC 3 cut(s) 173, 275, 1315
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 692, 824, 1130
ApoI RAATTY 2 cut(s) 484, 1039
AspLEI GCGC 1 cut(s) 1365
AspS9I GGNCC 3 cut(s) 173, 174, 275
AsuHPI GGTGA 2 cut(s) 16, 623
AvaI CYCGRG 1 cut(s) 1167
BaeGI GKGCMC 2 cut(s) 177, 438
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 2 cut(s) 177, 1174
BauI CACGAG 1 cut(s) 1146
BbsI GAAGAC 2 cut(s) 21, 678
Bbv12I GWGCWC 2 cut(s) 901, 1174
BbvI GCAGC 3 cut(s) 704, 811, 1117
BccI CCATC 1 cut(s) 947
BciT130I CCWGG 4 cut(s) 500, 821, 903, 1296
BclI TGATCA 1 cut(s) 90
BfaI CTAG 8 cut(s) 72, 80, 195, 891, 987, 1017, 1101, 1366
BfmI CTRYAG 2 cut(s) 618, 1306
BfoI RGCGCY 1 cut(s) 1366
BglII AGATCT 1 cut(s) 1049
BisI GCNGC 3 cut(s) 693, 825, 1131
BlpI GCTNAGC 2 cut(s) 639, 769
BlsI GCNGC 3 cut(s) 694, 826, 1132
Bme1390I CCNGG 4 cut(s) 500, 821, 903, 1296
BmeT110I CYCGRG 1 cut(s) 1167
BmgT120I GGNCC 3 cut(s) 173, 174, 275
BmiI GGNNCC 2 cut(s) 175, 225
BmrFI CCNGG 4 cut(s) 500, 821, 903, 1296
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 127, 535, 966, 991
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 21, 678
BplI GAGNNNNNCTC 2 cut(s) 1305, 1337
Bpu10I CCTNAGC 1 cut(s) 829
Bpu1102I GCTNAGC 2 cut(s) 639, 769
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 3 cut(s) 316, 853, 1264
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 4 cut(s) 500, 821, 903, 1296
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 508, 538
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 7 cut(s) 27, 164, 285, 310, 630, 823, 926
BseNI ACTGG 3 cut(s) 316, 853, 1264
BseRI GAGGAG 2 cut(s) 1164, 1167
BseSI GKGCMC 2 cut(s) 177, 438
BseXI GCAGC 3 cut(s) 704, 811, 1117
BshFI GGCC 3 cut(s) 175, 277, 1317
BshNI GGYRCC 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 901, 1174
BsiHKCI CYCGRG 1 cut(s) 1167
BslI CCNNNNNNNGG 1 cut(s) 458
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 175, 277, 1317
BsoBI CYCGRG 1 cut(s) 1167
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 4 cut(s) 177, 438, 901, 1174
Bsp143I GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
Bsp1720I GCTNAGC 2 cut(s) 639, 769
BspACI CCGC 1 cut(s) 1197
BspANI GGCC 3 cut(s) 175, 277, 1317
BspCNI CTCAG 7 cut(s) 26, 163, 284, 309, 631, 822, 925
BspLI GGNNCC 2 cut(s) 175, 225
BspPI GGATC 2 cut(s) 37, 245
BspQI GCTCTTC 1 cut(s) 889
BspT107I GGYRCC 1 cut(s) 223
BsrI ACTGG 3 cut(s) 316, 853, 1264
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
BssSI CACGAG 1 cut(s) 1146
Bst2BI CACGAG 1 cut(s) 1146
Bst2UI CCWGG 4 cut(s) 500, 821, 903, 1296
Bst4CI ACNGT 6 cut(s) 27, 394, 433, 456, 1307, 1340
Bst6I CTCTTC 3 cut(s) 519, 889, 1306
BstC8I GCNNGC 2 cut(s) 1195, 1319
BstEII GGTNACC 1 cut(s) 611
BstF5I GGATG 2 cut(s) 508, 538
BstH2I RGCGCY 1 cut(s) 1366
BstHHI GCGC 1 cut(s) 1365
BstKTI GATC 6 cut(s) 45, 93, 253, 778, 992, 1052
BstMBI GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
BstMWI GCNNNNNNNGC 5 cut(s) 115, 283, 692, 713, 830
BstNI CCWGG 4 cut(s) 500, 821, 903, 1296
BstNSI RCATGY 2 cut(s) 358, 526
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 4 cut(s) 498, 819, 901, 1294
BstSFI CTRYAG 2 cut(s) 618, 1306
BstSLI GKGCMC 2 cut(s) 177, 438
BstV1I GCAGC 3 cut(s) 704, 811, 1117
BstV2I GAAGAC 2 cut(s) 21, 678
BstX2I RGATCY 2 cut(s) 250, 1049
BstXI CCANNNNNNTGG 3 cut(s) 703, 759, 1123
BstYI RGATCY 2 cut(s) 250, 1049
BsuRI GGCC 3 cut(s) 175, 277, 1317
BtsCI GGATG 2 cut(s) 508, 538
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 5 cut(s) 23, 180, 429, 817, 1271
Cac8I GCNNGC 2 cut(s) 1195, 1319
CfoI GCGC 1 cut(s) 1365
Cfr13I GGNCC 3 cut(s) 173, 174, 275
CsiI ACCWGGT 1 cut(s) 1294
Csp6I GTAC 1 cut(s) 338
CviAII CATG 6 cut(s) 355, 523, 697, 743, 1057, 1324
CviQI GTAC 1 cut(s) 338
DpnI GATC 6 cut(s) 44, 92, 252, 777, 991, 1051
DpnII GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
Eam1104I CTCTTC 3 cut(s) 519, 889, 1306
EarI CTCTTC 3 cut(s) 519, 889, 1306
Ecl136II GAGCTC 1 cut(s) 1172
Eco24I GRGCYC 2 cut(s) 177, 1174
Eco53kI GAGCTC 1 cut(s) 1172
Eco57I CTGAAG 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 1167
Eco91I GGTNACC 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 1172
EcoO109I RGGNCCY 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 611
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 4 cut(s) 498, 819, 901, 1294
EcoT22I ATGCAT 1 cut(s) 528
EcoT38I GRGCYC 2 cut(s) 177, 1174
FaeI CATG 6 cut(s) 358, 526, 700, 746, 1060, 1327
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FatI CATG 6 cut(s) 354, 522, 696, 742, 1056, 1323
FauI CCCGC 1 cut(s) 1190
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 693, 825, 1131
FokI GGATG 2 cut(s) 515, 525
FriOI GRGCYC 2 cut(s) 177, 1174
Fsp4HI GCNGC 3 cut(s) 693, 825, 1131
FspBI CTAG 8 cut(s) 72, 80, 195, 891, 987, 1017, 1101, 1366
GlaI GCGC 1 cut(s) 1364
GluI GCNGC 3 cut(s) 693, 825, 1131
HaeII RGCGCY 1 cut(s) 1366
HaeIII GGCC 3 cut(s) 175, 277, 1317
HhaI GCGC 1 cut(s) 1365
Hin1II CATG 6 cut(s) 358, 526, 700, 746, 1060, 1327
Hin6I GCGC 1 cut(s) 1363
HinP1I GCGC 1 cut(s) 1363
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HindIII AAGCTT 2 cut(s) 584, 714
HinfI GANTC 2 cut(s) 17, 906
HphI GGTGA 2 cut(s) 16, 623
Hpy166II GTNNAC 3 cut(s) 98, 800, 879
Hpy188I TCNGA 7 cut(s) 16, 405, 558, 721, 740, 783, 1292
Hpy188III TCNNGA 1 cut(s) 891
Hpy8I GTNNAC 3 cut(s) 98, 800, 879
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 6 cut(s) 27, 394, 433, 456, 1307, 1340
HpyCH4V TGCA 7 cut(s) 212, 335, 358, 526, 692, 700, 1066
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 283, 692, 713, 830
Hsp92II CATG 6 cut(s) 358, 526, 700, 746, 1060, 1327
HspAI GCGC 1 cut(s) 1363
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
LguI GCTCTTC 1 cut(s) 889
LmnI GCTCC 4 cut(s) 190, 859, 871, 1177
Lsp1109I GCAGC 3 cut(s) 704, 811, 1117
LweI GCATC 4 cut(s) 127, 535, 966, 991
MabI ACCWGGT 1 cut(s) 1294
MaeI CTAG 8 cut(s) 72, 80, 195, 891, 987, 1017, 1101, 1366
MaeIII GTNAC 5 cut(s) 4, 242, 611, 1298, 1334
MalI GATC 6 cut(s) 44, 92, 252, 777, 991, 1051
MboI GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
MboII GAAGA 9 cut(s) 21, 506, 683, 770, 906, 1040, 1264, 1323, 1337
MfeI CAATTG 2 cut(s) 1067, 1121
MflI RGATCY 2 cut(s) 250, 1049
MhlI GDGCHC 4 cut(s) 177, 438, 901, 1174
MluCI AATT 6 cut(s) 49, 484, 884, 1039, 1067, 1121
MmeI TCCRAC 1 cut(s) 490
Mph1103I ATGCAT 1 cut(s) 528
MseI TTAA 4 cut(s) 159, 546, 948, 972
MslI CAYNNNNRTG 2 cut(s) 240, 1061
MspR9I CCNGG 4 cut(s) 500, 821, 903, 1296
MunI CAATTG 2 cut(s) 1067, 1121
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 4 cut(s) 500, 821, 903, 1296
MwoI GCNNNNNNNGC 5 cut(s) 115, 283, 692, 713, 830
NdeII GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
NlaIII CATG 6 cut(s) 358, 526, 700, 746, 1060, 1327
NlaIV GGNNCC 2 cut(s) 175, 225
NmuCI GTSAC 4 cut(s) 4, 242, 611, 1298
NsiI ATGCAT 1 cut(s) 528
NspI RCATGY 2 cut(s) 358, 526
PaeR7I CTCGAG 1 cut(s) 1167
PciSI GCTCTTC 1 cut(s) 889
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 17, 906
PflFI GACNNNGTC 1 cut(s) 1296
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 3 cut(s) 694, 826, 1132
Psp124BI GAGCTC 1 cut(s) 1174
Psp6I CCWGG 4 cut(s) 498, 819, 901, 1294
PspEI GGTNACC 1 cut(s) 611
PspGI CCWGG 4 cut(s) 498, 819, 901, 1294
PspN4I GGNNCC 2 cut(s) 175, 225
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 3 cut(s) 173, 174, 275
PspXI VCTCGAGB 1 cut(s) 1167
PsuI RGATCY 2 cut(s) 250, 1049
PsyI GACNNNGTC 1 cut(s) 1296
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 2 cut(s) 240, 1061
SacI GAGCTC 1 cut(s) 1174
SapI GCTCTTC 1 cut(s) 889
SaqAI TTAA 4 cut(s) 159, 546, 948, 972
SatI GCNGC 3 cut(s) 693, 825, 1131
Sau3AI GATC 6 cut(s) 42, 90, 250, 775, 989, 1049
Sau96I GGNCC 3 cut(s) 173, 174, 275
ScrFI CCNGG 4 cut(s) 500, 821, 903, 1296
SduI GDGCHC 4 cut(s) 177, 438, 901, 1174
SexAI ACCWGGT 1 cut(s) 1294
SfaNI GCATC 4 cut(s) 127, 535, 966, 991
SfcI CTRYAG 2 cut(s) 618, 1306
Sfr274I CTCGAG 1 cut(s) 1167
SlaI CTCGAG 1 cut(s) 1167
SmiMI CAYNNNNRTG 2 cut(s) 240, 1061
SmlI CTYRAG 1 cut(s) 1167
SmoI CTYRAG 1 cut(s) 1167
Sse9I AATT 6 cut(s) 49, 484, 884, 1039, 1067, 1121
SsiI CCGC 1 cut(s) 1197
SspI AATATT 1 cut(s) 125
SspMI CTAG 8 cut(s) 72, 80, 195, 891, 987, 1017, 1101, 1366
SstI GAGCTC 1 cut(s) 1174
StyD4I CCNGG 4 cut(s) 498, 819, 901, 1294
TaaI ACNGT 6 cut(s) 27, 394, 433, 456, 1307, 1340
TaqI TCGA 1 cut(s) 1168
TasI AATT 6 cut(s) 49, 484, 884, 1039, 1067, 1121
TfiI GAWTC 2 cut(s) 17, 906
Tru1I TTAA 4 cut(s) 159, 546, 948, 972
Tru9I TTAA 4 cut(s) 159, 546, 948, 972
TscAI CASTG 5 cut(s) 30, 187, 436, 817, 1271
TseFI GTSAC 4 cut(s) 4, 242, 611, 1298
TseI GCWGC 3 cut(s) 692, 824, 1130
Tsp45I GTSAC 4 cut(s) 4, 242, 611, 1298
TspDTI ATGAA 4 cut(s) 587, 596, 1041, 1142
TspRI CASTG 5 cut(s) 30, 187, 436, 817, 1271
Tth111I GACNNNGTC 1 cut(s) 1296
Van91I CCANNNNNTGG 1 cut(s) 458
XapI RAATTY 2 cut(s) 484, 1039
XbaI TCTAGA 1 cut(s) 890
XceI RCATGY 2 cut(s) 358, 526
XhoI CTCGAG 1 cut(s) 1167
XspI CTAG 8 cut(s) 72, 80, 195, 891, 987, 1017, 1101, 1366
Zsp2I ATGCAT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.