transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVP_2 | PF08284 | 20 - 57 | 1.4e-07 | Retroviral aspartyl protease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 90 |
| AciI | CCGC | 1 cut(s) | 65 |
| AclWI | GGATC | 3 cut(s) | 29, 75, 92 |
| AfaI | GTAC | 1 cut(s) | 75 |
| AjnI | CCWGG | 1 cut(s) | 178 |
| AluBI | AGCT | 1 cut(s) | 55 |
| AluI | AGCT | 1 cut(s) | 55 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| Alw26I | GTCTC | 2 cut(s) | 121, 248 |
| AlwI | GGATC | 3 cut(s) | 29, 75, 92 |
| AoxI | GGCC | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| AsuII | TTCGAA | 1 cut(s) | 108 |
| BanII | GRGCYC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BccI | CCATC | 1 cut(s) | 110 |
| BciT130I | CCWGG | 1 cut(s) | 180 |
| BcoDI | GTCTC | 2 cut(s) | 121, 248 |
| Bme1390I | CCNGG | 1 cut(s) | 180 |
| BmrFI | CCNGG | 1 cut(s) | 180 |
| BmsI | GCATC | 1 cut(s) | 124 |
| Bpu14I | TTCGAA | 1 cut(s) | 108 |
| Bsa29I | ATCGAT | 1 cut(s) | 144 |
| BsaAI | YACGTR | 1 cut(s) | 83 |
| BsaBI | GATNNNNATC | 2 cut(s) | 33, 150 |
| Bse8I | GATNNNNATC | 2 cut(s) | 33, 150 |
| BseBI | CCWGG | 1 cut(s) | 180 |
| BseCI | ATCGAT | 1 cut(s) | 144 |
| BseJI | GATNNNNATC | 2 cut(s) | 33, 150 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BshFI | GGCC | 1 cut(s) | 187 |
| BshVI | ATCGAT | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsmAI | GTCTC | 2 cut(s) | 121, 248 |
| BsnI | GGCC | 1 cut(s) | 187 |
| Bsp119I | TTCGAA | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 1 cut(s) | 57 |
| Bsp143I | GATC | 3 cut(s) | 34, 67, 97 |
| BspACI | CCGC | 1 cut(s) | 65 |
| BspANI | GGCC | 1 cut(s) | 187 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspDI | ATCGAT | 1 cut(s) | 144 |
| BspPI | GGATC | 3 cut(s) | 29, 75, 92 |
| BspT104I | TTCGAA | 1 cut(s) | 108 |
| BssMI | GATC | 3 cut(s) | 34, 67, 97 |
| Bst2UI | CCWGG | 1 cut(s) | 180 |
| BstBAI | YACGTR | 1 cut(s) | 83 |
| BstBI | TTCGAA | 1 cut(s) | 108 |
| BstC8I | GCNNGC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 1 cut(s) | 51 |
| BstKTI | GATC | 3 cut(s) | 37, 70, 100 |
| BstMAI | GTCTC | 2 cut(s) | 121, 248 |
| BstMBI | GATC | 3 cut(s) | 34, 67, 97 |
| BstNI | CCWGG | 1 cut(s) | 180 |
| BstSCI | CCNGG | 1 cut(s) | 178 |
| BstSNI | TACGTA | 1 cut(s) | 83 |
| BstX2I | RGATCY | 2 cut(s) | 34, 67 |
| BstYI | RGATCY | 2 cut(s) | 34, 67 |
| Bsu15I | ATCGAT | 1 cut(s) | 144 |
| BsuRI | GGCC | 1 cut(s) | 187 |
| BsuTUI | ATCGAT | 1 cut(s) | 144 |
| BtsIMutI | CAGTG | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 1 cut(s) | 24 |
| ClaI | ATCGAT | 1 cut(s) | 144 |
| Csp6I | GTAC | 1 cut(s) | 74 |
| CviAII | CATG | 2 cut(s) | 58, 131 |
| CviJI | RGCY | 5 cut(s) | 26, 55, 121, 187, 251 |
| CviKI_1 | RGCY | 5 cut(s) | 26, 55, 121, 187, 251 |
| CviQI | GTAC | 1 cut(s) | 74 |
| DdeI | CTNAG | 1 cut(s) | 51 |
| DpnI | GATC | 3 cut(s) | 36, 69, 99 |
| DpnII | GATC | 3 cut(s) | 34, 67, 97 |
| Ecl136II | GAGCTC | 1 cut(s) | 55 |
| Eco105I | TACGTA | 1 cut(s) | 83 |
| Eco24I | GRGCYC | 1 cut(s) | 57 |
| Eco53kI | GAGCTC | 1 cut(s) | 55 |
| EcoICRI | GAGCTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 178 |
| EcoT38I | GRGCYC | 1 cut(s) | 57 |
| FaeI | CATG | 2 cut(s) | 61, 134 |
| FaiI | YATR | 4 cut(s) | 59, 132, 141, 221 |
| FatI | CATG | 2 cut(s) | 57, 130 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| FriOI | GRGCYC | 1 cut(s) | 57 |
| HaeIII | GGCC | 1 cut(s) | 187 |
| Hin1II | CATG | 2 cut(s) | 61, 134 |
| HinfI | GANTC | 2 cut(s) | 13, 216 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 3 cut(s) | 91, 176, 209 |
| Hpy188I | TCNGA | 1 cut(s) | 248 |
| Hpy188III | TCNNGA | 1 cut(s) | 126 |
| Hpy8I | GTNNAC | 3 cut(s) | 91, 176, 209 |
| HpyAV | CCTTC | 1 cut(s) | 177 |
| HpyCH4IV | ACGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 1 cut(s) | 202 |
| HpyF3I | CTNAG | 1 cut(s) | 51 |
| HpySE526I | ACGT | 1 cut(s) | 82 |
| Hsp92II | CATG | 2 cut(s) | 61, 134 |
| Kzo9I | GATC | 3 cut(s) | 34, 67, 97 |
| LpnPI | CCDG | 3 cut(s) | 8, 165, 192 |
| LweI | GCATC | 1 cut(s) | 124 |
| MaeII | ACGT | 1 cut(s) | 82 |
| MalI | GATC | 3 cut(s) | 36, 69, 99 |
| MboI | GATC | 3 cut(s) | 34, 67, 97 |
| MboII | GAAGA | 2 cut(s) | 44, 97 |
| MflI | RGATCY | 2 cut(s) | 34, 67 |
| MhlI | GDGCHC | 1 cut(s) | 57 |
| MluCI | AATT | 2 cut(s) | 115, 197 |
| MspR9I | CCNGG | 1 cut(s) | 180 |
| MvaI | CCWGG | 1 cut(s) | 180 |
| NdeII | GATC | 3 cut(s) | 34, 67, 97 |
| NlaIII | CATG | 2 cut(s) | 61, 134 |
| NspV | TTCGAA | 1 cut(s) | 108 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 93 |
| PfeI | GAWTC | 2 cut(s) | 13, 216 |
| Ppu21I | YACGTR | 1 cut(s) | 83 |
| Psp124BI | GAGCTC | 1 cut(s) | 57 |
| Psp6I | CCWGG | 1 cut(s) | 178 |
| PspGI | CCWGG | 1 cut(s) | 178 |
| PsuI | RGATCY | 2 cut(s) | 34, 67 |
| RsaI | GTAC | 1 cut(s) | 75 |
| RsaNI | GTAC | 1 cut(s) | 74 |
| SacI | GAGCTC | 1 cut(s) | 57 |
| Sau3AI | GATC | 3 cut(s) | 34, 67, 97 |
| ScrFI | CCNGG | 1 cut(s) | 180 |
| SduI | GDGCHC | 1 cut(s) | 57 |
| SetI | ASST | 5 cut(s) | 57, 85, 181, 208, 226 |
| SfaNI | GCATC | 1 cut(s) | 124 |
| SfuI | TTCGAA | 1 cut(s) | 108 |
| SgeI | CNNG | 9 cut(s) | 35, 70, 83, 138, 143, 191, 192, 203, 215 |
| SnaBI | TACGTA | 1 cut(s) | 83 |
| Sse9I | AATT | 2 cut(s) | 115, 197 |
| SsiI | CCGC | 1 cut(s) | 65 |
| SstI | GAGCTC | 1 cut(s) | 57 |
| StyD4I | CCNGG | 1 cut(s) | 178 |
| TaiI | ACGT | 1 cut(s) | 85 |
| TaqI | TCGA | 5 cut(s) | 96, 108, 125, 144, 154 |
| TasI | AATT | 2 cut(s) | 115, 197 |
| TfiI | GAWTC | 2 cut(s) | 13, 216 |
| TscAI | CASTG | 1 cut(s) | 55 |
| TspDTI | ATGAA | 3 cut(s) | 26, 45, 128 |
| TspGWI | ACGGA | 1 cut(s) | 226 |
| TspRI | CASTG | 1 cut(s) | 55 |
| XmiI | GTMKAC | 1 cut(s) | 90 |