FvH4_4g13944

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
17494848 .. 17496680
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13944.t1

Sequence Viewer

Length: 1833 bp
ATGCCTCCTAGGTGCCCACGGCAACCCCGTGTGGCTACTTCGATCAATGCCGATGAGGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTTATGGATCGAGCTCCACACCTTTATACAGTGAAGAGGAGAGAGGTTTATGAGGCTGGAGCAAGAGAGTTCAAGGGTGCCAATGGACCCCTCGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCACAGATTTGCCAGAAGAAAGGAAGGTGAAGATGGCAGTGACTTTCCTGAATGATTCAACACATCACTGGTGGTCGCTCGCTAGCAGGAATGTAGAGGATGCGCTGAATATGTCGTGGGAACAGTTTAAGACGCTTTTCTTGGGGCAGTATTTCAGTCCTGCCCACCGCAGCAGAATTCAGTCGGATTTCCTGAATATGAAGAAGAGGGATGATGAGGGTGTTATAGAGTTCCAGGAGAGATTCACTTCCTTGAGCTATCATGTGTCATATCTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCTCTTGGTGGAGTATTTGCAGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGATGCTGTTCATGCAGCCATGACCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTTGGTGGCCCCAGTCAGGGTCCATCCAAGAAAGCTGCTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTAATTCTCGGTTCAGGGTTAGAGGACGTCACAAGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCTGGGCAGTATGGTTCGGGTGGCAGTTTCCATGGTGGGTCATCCGGTAGCCAGACTTTTTCATATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTGGTCAAGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTTCCACCCCTACTCAGCCTGTTGGTCAGTCCTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAAAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTACATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTCGATTCGCCCTCCATGCAAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTTTTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATATAAGTATGAGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCAGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCACCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGATTCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

611

Amino Acids

66.75

Weight (kDa)

6.56

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 5.5e-14 Retrotransposon gag protein
RVP_2 PF08284 372 - 502 6.1e-34 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 643
AatII GACGTC 2 cut(s) 802, 1111
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 4 cut(s) 12, 185, 1049, 1780
AccII CGCG 1 cut(s) 1122
AciI CCGC 5 cut(s) 412, 726, 1087, 1569, 1802
AclWI GGATC 3 cut(s) 123, 772, 1217
AcoI YGGCCR 1 cut(s) 668
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 2 cut(s) 714, 943
AcyI GRCGYC 2 cut(s) 799, 1108
AfaI GTAC 2 cut(s) 1159, 1183
AfiI CCNNNNNNNGG 4 cut(s) 694, 695, 979, 1150
AgsI TTSAA 6 cut(s) 181, 303, 1484, 1810, 1819, 1826
AjnI CCWGG 5 cut(s) 477, 536, 1053, 1294, 1708
AluBI AGCT 7 cut(s) 122, 501, 713, 743, 1031, 1466, 1619
AluI AGCT 7 cut(s) 122, 501, 713, 743, 1031, 1466, 1619
Alw21I GWGCWC 3 cut(s) 124, 248, 667
Alw26I GTCTC 3 cut(s) 802, 1293, 1317
AlwI GGATC 3 cut(s) 123, 772, 1217
AoxI GGCC 2 cut(s) 668, 685
ApeKI GCWGC 8 cut(s) 414, 629, 713, 835, 910, 913, 916, 1577
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 1190
Asp700I GAANNNNTTC 2 cut(s) 1662, 1752
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 2 cut(s) 349, 1124
AspS9I GGNCC 5 cut(s) 194, 534, 686, 698, 990
AsuC2I CCSGG 2 cut(s) 1227, 1758
AsuHPI GGTGA 3 cut(s) 283, 1337, 1342
AsuII TTCGAA 1 cut(s) 1501
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 4 cut(s) 194, 534, 698, 990
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1698
BaeGI GKGCMC 2 cut(s) 17, 1054
BanI GGYRCC 4 cut(s) 12, 185, 1049, 1780
BanII GRGCYC 2 cut(s) 124, 562
BarI GAAGNNNNNNTAC 2 cut(s) 1482, 1514
BauI CACGAG 1 cut(s) 672
Bbv12I GWGCWC 3 cut(s) 124, 248, 667
BbvCI CCTCAGC 2 cut(s) 101, 1027
BbvI GCAGC 8 cut(s) 426, 641, 700, 847, 922, 925, 928, 1564
BccI CCATC 5 cut(s) 271, 535, 709, 1288, 1505
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 5 cut(s) 479, 538, 1055, 1296, 1710
BcnI CCSGG 2 cut(s) 1227, 1758
BcoDI GTCTC 3 cut(s) 802, 1293, 1317
BfaI CTAG 6 cut(s) 9, 327, 816, 1041, 1125, 1251
BfmI CTRYAG 2 cut(s) 1668, 1743
BfuAI ACCTGC 1 cut(s) 820
BisI GCNGC 8 cut(s) 415, 630, 714, 836, 911, 914, 917, 1578
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 8 cut(s) 416, 631, 715, 837, 912, 915, 918, 1579
Bme1390I CCNGG 7 cut(s) 479, 538, 1055, 1227, 1296, 1710, 1758
Bme18I GGWCC 4 cut(s) 194, 534, 698, 990
BmgT120I GGNCC 5 cut(s) 194, 534, 686, 698, 990
BmrFI CCNGG 7 cut(s) 479, 538, 1055, 1227, 1296, 1710, 1758
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 3 cut(s) 193, 334, 607
BmtI GCTAGC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 684
BpmI CTGGAG 4 cut(s) 186, 1053, 1149, 1782
Bpu10I CCTNAGC 2 cut(s) 101, 1027
Bpu14I TTCGAA 1 cut(s) 1501
BpuEI CTTGAG 1 cut(s) 517
BpuMI CCSGG 2 cut(s) 1227, 1758
BsaHI GRCGYC 2 cut(s) 799, 1108
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 6 cut(s) 8, 17, 871, 1053, 1054, 1531
BsaWI WCCGGW 2 cut(s) 884, 1322
Bsc4I CCNNNNNNNGG 4 cut(s) 694, 695, 979, 1150
Bse1I ACTGG 4 cut(s) 81, 317, 690, 823
Bse21I CCTNAGG 1 cut(s) 1698
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 5 cut(s) 479, 538, 1055, 1296, 1710
BseDI CCNNGG 6 cut(s) 8, 17, 871, 1053, 1054, 1531
BseGI GGATG 7 cut(s) 112, 349, 460, 546, 701, 722, 881
BseLI CCNNNNNNNGG 4 cut(s) 694, 695, 979, 1150
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 7 cut(s) 92, 998, 1022, 1041, 1097, 1689, 1790
BseNI ACTGG 4 cut(s) 81, 317, 690, 823
BseRI GAGGAG 2 cut(s) 160, 1715
BseSI GKGCMC 2 cut(s) 17, 1054
BseXI GCAGC 8 cut(s) 426, 641, 700, 847, 922, 925, 928, 1564
BseYI CCCAGC 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 1122
BshFI GGCC 2 cut(s) 670, 687
BshNI GGYRCC 4 cut(s) 12, 185, 1049, 1780
BsiHKAI GWGCWC 3 cut(s) 124, 248, 667
BsiSI CCGG 4 cut(s) 885, 1227, 1323, 1758
BslFI GGGAC 2 cut(s) 87, 1095
BslI CCNNNNNNNGG 4 cut(s) 694, 695, 979, 1150
BsmAI GTCTC 3 cut(s) 802, 1293, 1317
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 2 cut(s) 87, 1095
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 2 cut(s) 670, 687
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 1501
Bsp1286I GDGCHC 6 cut(s) 17, 124, 248, 562, 667, 1054
Bsp143I GATC 5 cut(s) 42, 115, 764, 1222, 1431
Bsp19I CCATGG 1 cut(s) 871
BspACI CCGC 5 cut(s) 412, 726, 1087, 1569, 1802
BspANI GGCC 2 cut(s) 670, 687
BspCNI CTCAG 7 cut(s) 93, 997, 1021, 1040, 1096, 1690, 1789
BspFNI CGCG 1 cut(s) 1122
BspMI ACCTGC 1 cut(s) 820
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 3 cut(s) 123, 772, 1217
BspT104I TTCGAA 1 cut(s) 1501
BspT107I GGYRCC 4 cut(s) 12, 185, 1049, 1780
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 4 cut(s) 81, 317, 690, 823
BssECI CCNNGG 6 cut(s) 8, 17, 871, 1053, 1054, 1531
BssMI GATC 5 cut(s) 42, 115, 764, 1222, 1431
BssNI GRCGYC 2 cut(s) 799, 1108
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 3 cut(s) 8, 871, 1531
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 5 cut(s) 479, 538, 1055, 1296, 1710
Bst4CI ACNGT 2 cut(s) 139, 369
Bst6I CTCTTC 3 cut(s) 137, 443, 1296
BstACI GRCGYC 2 cut(s) 799, 1108
BstBI TTCGAA 1 cut(s) 1501
BstC8I GCNNGC 4 cut(s) 244, 324, 328, 1206
BstDEI CTNAG 7 cut(s) 101, 984, 1008, 1027, 1083, 1698, 1776
BstDSI CCRYGG 2 cut(s) 17, 871
BstF5I GGATG 7 cut(s) 112, 349, 460, 546, 701, 722, 881
BstFNI CGCG 1 cut(s) 1122
BstHHI GCGC 2 cut(s) 349, 1124
BstKTI GATC 5 cut(s) 45, 118, 767, 1225, 1434
BstMAI GTCTC 3 cut(s) 802, 1293, 1317
BstMBI GATC 5 cut(s) 42, 115, 764, 1222, 1431
BstMWI GCNNNNNNNGC 8 cut(s) 626, 844, 916, 1268, 1463, 1577, 1616, 1714
BstNI CCWGG 5 cut(s) 479, 538, 1055, 1296, 1710
BstNSI RCATGY 2 cut(s) 1136, 1310
BstSCI CCNGG 7 cut(s) 477, 536, 1053, 1225, 1294, 1708, 1756
BstSFI CTRYAG 2 cut(s) 1668, 1743
BstSLI GKGCMC 2 cut(s) 17, 1054
BstUI CGCG 1 cut(s) 1122
BstV1I GCAGC 8 cut(s) 426, 641, 700, 847, 922, 925, 928, 1564
BstXI CCANNNNNNTGG 1 cut(s) 1302
Bsu36I CCTNAGG 1 cut(s) 1698
BsuRI GGCC 2 cut(s) 670, 687
BtgI CCRYGG 2 cut(s) 17, 871
BtsCI GGATG 7 cut(s) 112, 349, 460, 546, 701, 722, 881
BtsI GCAGTG 2 cut(s) 288, 1066
BtsIMutI CAGTG 4 cut(s) 144, 288, 310, 1066
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 4 cut(s) 244, 324, 328, 1206
CfoI GCGC 2 cut(s) 349, 1124
Cfr13I GGNCC 5 cut(s) 194, 534, 686, 698, 990
CseI GACGC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 1158, 1182
CviQI GTAC 2 cut(s) 1158, 1182
DdeI CTNAG 7 cut(s) 101, 984, 1008, 1027, 1083, 1698, 1776
DpnI GATC 5 cut(s) 44, 117, 766, 1224, 1433
DpnII GATC 5 cut(s) 42, 115, 764, 1222, 1431
DrdI GACNNNNNNGTC 1 cut(s) 643
DseDI GACNNNNNNGTC 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 668
Eam1104I CTCTTC 3 cut(s) 137, 443, 1296
EarI CTCTTC 3 cut(s) 137, 443, 1296
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 3 cut(s) 8, 871, 1531
Eco24I GRGCYC 2 cut(s) 124, 562
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 4 cut(s) 194, 534, 698, 990
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 714, 943
Eco81I CCTNAGG 1 cut(s) 1698
EcoICRI GAGCTC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 5 cut(s) 477, 536, 1053, 1294, 1708
EcoT14I CCWWGG 3 cut(s) 8, 871, 1531
EcoT38I GRGCYC 2 cut(s) 124, 562
ErhI CCWWGG 3 cut(s) 8, 871, 1531
Esp3I CGTCTC 1 cut(s) 1293
FaqI GGGAC 2 cut(s) 87, 1095
FauI CCCGC 1 cut(s) 1080
FauNDI CATATG 1 cut(s) 904
Fnu4HI GCNGC 8 cut(s) 415, 630, 714, 836, 911, 914, 917, 1578
FokI GGATG 7 cut(s) 119, 356, 467, 553, 688, 709, 868
FriOI GRGCYC 2 cut(s) 124, 562
Fsp4HI GCNGC 8 cut(s) 415, 630, 714, 836, 911, 914, 917, 1578
FspBI CTAG 6 cut(s) 9, 327, 816, 1041, 1125, 1251
GlaI GCGC 2 cut(s) 348, 1123
GluI GCNGC 8 cut(s) 415, 630, 714, 836, 911, 914, 917, 1578
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 4 cut(s) 186, 1053, 1149, 1782
HaeIII GGCC 2 cut(s) 670, 687
HapII CCGG 4 cut(s) 885, 1227, 1323, 1758
HgaI GACGC 1 cut(s) 385
HhaI GCGC 2 cut(s) 349, 1124
Hin1I GRCGYC 2 cut(s) 799, 1108
Hin6I GCGC 2 cut(s) 347, 1122
HinP1I GCGC 2 cut(s) 347, 1122
HinfI GANTC 6 cut(s) 299, 486, 644, 1117, 1257, 1822
HpaII CCGG 4 cut(s) 885, 1227, 1323, 1758
HphI GGTGA 3 cut(s) 283, 1337, 1342
Hpy166II GTNNAC 2 cut(s) 220, 1106
Hpy188I TCNGA 3 cut(s) 430, 616, 987
Hpy188III TCNNGA 9 cut(s) 292, 436, 524, 950, 961, 1166, 1508, 1685, 1697
Hpy8I GTNNAC 2 cut(s) 220, 1106
HpyAV CCTTC 2 cut(s) 262, 1370
HpyCH4III ACNGT 2 cut(s) 139, 369
HpyCH4IV ACGT 3 cut(s) 799, 1108, 1184
HpyCH4V TGCA 6 cut(s) 578, 629, 1271, 1560, 1580, 1724
HpyF10VI GCNNNNNNNGC 8 cut(s) 626, 844, 916, 1268, 1463, 1577, 1616, 1714
HpyF3I CTNAG 7 cut(s) 101, 984, 1008, 1027, 1083, 1698, 1776
HpySE526I ACGT 3 cut(s) 799, 1108, 1184
Hsp92I GRCGYC 2 cut(s) 799, 1108
HspAI GCGC 2 cut(s) 347, 1122
Kzo9I GATC 5 cut(s) 42, 115, 764, 1222, 1431
LmnI GCTCC 5 cut(s) 127, 167, 819, 1229, 1801
Lsp1109I GCAGC 8 cut(s) 426, 641, 700, 847, 922, 925, 928, 1564
LweI GCATC 3 cut(s) 193, 334, 607
MaeI CTAG 6 cut(s) 9, 327, 816, 1041, 1125, 1251
MaeII ACGT 3 cut(s) 799, 1108, 1184
MaeIII GTNAC 2 cut(s) 283, 800
MalI GATC 5 cut(s) 44, 117, 766, 1224, 1433
MboI GATC 5 cut(s) 42, 115, 764, 1222, 1431
MboII GAAGA 8 cut(s) 154, 272, 286, 457, 460, 1283, 1670, 1831
MfeI CAATTG 1 cut(s) 1826
MhlI GDGCHC 6 cut(s) 17, 124, 248, 562, 667, 1054
MlyI GAGTC 2 cut(s) 653, 1111
MmeI TCCRAC 1 cut(s) 408
MroXI GAANNNNTTC 2 cut(s) 1662, 1752
MseI TTAA 5 cut(s) 372, 1190, 1217, 1383, 1400
MslI CAYNNNNRTG 1 cut(s) 1272
MspA1I CMGCKG 5 cut(s) 743, 1031, 1087, 1571, 1802
MspI CCGG 4 cut(s) 885, 1227, 1323, 1758
MspR9I CCNGG 7 cut(s) 479, 538, 1055, 1227, 1296, 1710, 1758
MunI CAATTG 1 cut(s) 1826
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 5 cut(s) 479, 538, 1055, 1296, 1710
MvnI CGCG 1 cut(s) 1122
MwoI GCNNNNNNNGC 8 cut(s) 626, 844, 916, 1268, 1463, 1577, 1616, 1714
NciI CCSGG 2 cut(s) 1227, 1758
NcoI CCATGG 1 cut(s) 871
NdeI CATATG 1 cut(s) 904
NdeII GATC 5 cut(s) 42, 115, 764, 1222, 1431
NheI GCTAGC 1 cut(s) 326
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 2 cut(s) 283, 800
NspI RCATGY 2 cut(s) 1136, 1310
NspV TTCGAA 1 cut(s) 1501
PasI CCCWGGG 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 2 cut(s) 1662, 1752
PfeI GAWTC 4 cut(s) 299, 486, 1257, 1822
PfoI TCCNGGA 3 cut(s) 477, 1225, 1756
PkrI GCNGC 8 cut(s) 416, 631, 715, 837, 912, 915, 918, 1579
PleI GAGTC 2 cut(s) 652, 1111
PpsI GAGTC 2 cut(s) 652, 1111
PshBI ATTAAT 1 cut(s) 1190
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 5 cut(s) 477, 536, 1053, 1294, 1708
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 5 cut(s) 477, 536, 1053, 1294, 1708
PspPI GGNCC 5 cut(s) 194, 534, 686, 698, 990
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 2 cut(s) 1159, 1183
RsaNI GTAC 2 cut(s) 1158, 1182
RseI CAYNNNNRTG 1 cut(s) 1272
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 5 cut(s) 372, 1190, 1217, 1383, 1400
SatI GCNGC 8 cut(s) 415, 630, 714, 836, 911, 914, 917, 1578
Sau3AI GATC 5 cut(s) 42, 115, 764, 1222, 1431
Sau96I GGNCC 5 cut(s) 194, 534, 686, 698, 990
SchI GAGTC 2 cut(s) 653, 1111
ScrFI CCNGG 7 cut(s) 479, 538, 1055, 1227, 1296, 1710, 1758
SduI GDGCHC 6 cut(s) 17, 124, 248, 562, 667, 1054
SfaNI GCATC 3 cut(s) 193, 334, 607
SfcI CTRYAG 2 cut(s) 1668, 1743
SfuI TTCGAA 1 cut(s) 1501
SinI GGWCC 4 cut(s) 194, 534, 698, 990
SmiMI CAYNNNNRTG 1 cut(s) 1272
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
SsiI CCGC 5 cut(s) 412, 726, 1087, 1569, 1802
SspMI CTAG 6 cut(s) 9, 327, 816, 1041, 1125, 1251
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 7 cut(s) 477, 536, 1053, 1225, 1294, 1708, 1756
StyI CCWWGG 3 cut(s) 8, 871, 1531
TaaI ACNGT 2 cut(s) 139, 369
TaiI ACGT 3 cut(s) 802, 1111, 1187
TaqI TCGA 6 cut(s) 41, 118, 201, 1255, 1389, 1501
TaqII GACCGA 1 cut(s) 1057
TfiI GAWTC 4 cut(s) 299, 486, 1257, 1822
Tru1I TTAA 5 cut(s) 372, 1190, 1217, 1383, 1400
Tru9I TTAA 5 cut(s) 372, 1190, 1217, 1383, 1400
TscAI CASTG 4 cut(s) 144, 288, 317, 1066
TseFI GTSAC 2 cut(s) 283, 800
TseI GCWGC 8 cut(s) 414, 629, 713, 835, 910, 913, 916, 1577
Tsp45I GTSAC 2 cut(s) 283, 800
TspDTI ATGAA 8 cut(s) 458, 541, 614, 708, 726, 891, 1230, 1234
TspRI CASTG 4 cut(s) 144, 288, 317, 1066
VpaK11BI GGWCC 4 cut(s) 194, 534, 698, 990
VspI ATTAAT 1 cut(s) 1190
XapI RAATTY 1 cut(s) 420
XceI RCATGY 2 cut(s) 1136, 1310
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 1662, 1752
XspI CTAG 6 cut(s) 9, 327, 816, 1041, 1125, 1251
ZraI GACGTC 2 cut(s) 800, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.