FvH4_4g10182

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
13229307 .. 13233490
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10182.t1

Sequence Viewer

Length: 561 bp
ATGGAGCGACACGGCGACACAACATGGAGCGACACGGCGACACGGCTCACAAGGCTGCTGTGTTCGTCAGTGCTGGCGCATCGAGCCAATGCAACTTTGAATCTTGAACTCGCCGCTCTACCCGATGACTTGATCTGGCAAGGACCTAAGCTCAGCTGTGGTAGATTGTTTTCGAAAAGTAGTGGTGCTTCGAAGTCCAAATGGATTGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCTTGTAAGGGAGATAGACTTCTCTATTGAATTACTTCTCGGAACAATGCCTATCTCACAAGCACCTTACAGAATGAATCCAACAGAATTGAAGGAATTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAACATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTAAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTAAATCAAGTCACGGTGAAGAATAAATATCCTTTGCCCTGCATTGATGATTTATTTGATCAGTTGAGGGGTGCTTCTGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

187

Amino Acids

21.02

Weight (kDa)

8.34

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccBSI CCGCTC 1 cut(s) 116
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 5 cut(s) 100, 107, 278, 340, 349
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 3 cut(s) 151, 156, 475
AluI AGCT 3 cut(s) 151, 156, 475
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 405, 445
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 502
AsuII TTCGAA 2 cut(s) 173, 191
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 443
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 434
BceAI ACGGC 3 cut(s) 28, 51, 59
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 405, 445
BisI GCNGC 2 cut(s) 56, 114
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 2 cut(s) 57, 115
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 152
Bpu14I TTCGAA 2 cut(s) 173, 191
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 2 cut(s) 214, 415
Bse21I CCTNAGG 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 166, 219
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 391
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 2 cut(s) 215, 416
BsmAI GTCTC 2 cut(s) 405, 445
BsnI GGCC 1 cut(s) 391
Bsp119I TTCGAA 2 cut(s) 173, 191
Bsp1286I GDGCHC 1 cut(s) 415
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 2 cut(s) 132, 532
Bsp1720I GCTNAGC 1 cut(s) 152
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 2 cut(s) 165, 220
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 445
BspT104I TTCGAA 2 cut(s) 173, 191
BspT107I GGYRCC 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 2 cut(s) 132, 532
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 490
BstBI TTCGAA 2 cut(s) 173, 191
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 147, 152, 228
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 223
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 135, 535
BstMAI GTCTC 2 cut(s) 405, 445
BstMBI GATC 2 cut(s) 132, 532
BstMWI GCNNNNNNNGC 3 cut(s) 52, 83, 244
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 356
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 4 cut(s) 24, 397, 405, 448
CviJI RGCY 7 cut(s) 46, 55, 86, 151, 156, 391, 475
CviKI_1 RGCY 7 cut(s) 46, 55, 86, 151, 156, 391, 475
DdeI CTNAG 3 cut(s) 147, 152, 228
DpnI GATC 2 cut(s) 134, 534
DpnII GATC 2 cut(s) 132, 532
Eco130I CCWWGG 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 4 cut(s) 27, 400, 408, 451
FaiI YATR 6 cut(s) 25, 398, 406, 449, 457, 468
FatI CATG 4 cut(s) 23, 396, 404, 447
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 56, 114
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 56, 114
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 56, 114
HaeIII GGCC 1 cut(s) 391
HapII CCGG 2 cut(s) 215, 416
HhaI GCGC 1 cut(s) 79
Hin1II CATG 4 cut(s) 27, 400, 408, 451
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 3 cut(s) 100, 325, 352
HpaII CCGG 2 cut(s) 215, 416
HphI GGTGA 1 cut(s) 502
Hpy188I TCNGA 2 cut(s) 290, 560
Hpy188III TCNNGA 3 cut(s) 104, 215, 227
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 4 cut(s) 92, 361, 459, 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 83, 244
HpyF3I CTNAG 3 cut(s) 147, 152, 228
Hsp92II CATG 4 cut(s) 27, 400, 408, 451
HspAI GCGC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 2 cut(s) 132, 532
LmnI GCTCC 3 cut(s) 4, 27, 418
LpnPI CCDG 9 cut(s) 59, 121, 225, 228, 240, 252, 347, 429, 526
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 134, 534
MbiI CCGCTC 1 cut(s) 116
MboI GATC 2 cut(s) 132, 532
MboII GAAGA 3 cut(s) 361, 445, 505
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 4 cut(s) 278, 335, 344, 356
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 223, 258, 534
Mph1103I ATGCAT 1 cut(s) 461
MroI TCCGGA 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 2 cut(s) 215, 416
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 52, 83, 244
NcoI CCATGG 1 cut(s) 404
NdeII GATC 2 cut(s) 132, 532
NlaIII CATG 4 cut(s) 27, 400, 408, 451
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 484
NsiI ATGCAT 1 cut(s) 461
NspI RCATGY 1 cut(s) 400
NspV TTCGAA 2 cut(s) 173, 191
PciI ACATGT 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 100, 325
PkrI GCNGC 2 cut(s) 57, 115
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 143
PscI ACATGT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 143
PspPPI RGGWCCY 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 156
SatI GCNGC 2 cut(s) 56, 114
Sau3AI GATC 2 cut(s) 132, 532
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 415
SetI ASST 5 cut(s) 148, 153, 158, 316, 477
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 2 cut(s) 173, 191
SinI GGWCC 1 cut(s) 143
Sse9I AATT 4 cut(s) 278, 335, 344, 356
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 3 cut(s) 82, 173, 191
TasI AATT 4 cut(s) 278, 335, 344, 356
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 100, 325
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 1 cut(s) 338
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 143
XceI RCATGY 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.