Rw6G010990
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000094
Physical Location & Seq
Reverse (-)
19362164 .. 19363545
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010990.1

Sequence Viewer

Length: 975 bp
ATGAACCGTATGTTCAGTCCGTACTTGGATAAGTTCGTGGATGATATCTTGATTTATTCCAAGACGTTGGAGGATCATGATAAGCATCTGCGGATTGTGCTACAGATTTTGAGAGAAAAGAAGTTGTTTGTGAAATTCGAGAAGTGCCAATTTTGGCAATGGGAGGTCAAGTTCCTTGGTCATGTAGTTTCGAAGGATGGAGTCTCCGTGGATCCTTCTAAGGTTGAGGCAGTACGTAGTTTTCTGGGTTTGGTAGGTTATTATCGGAGATTCATTGAAGGATTTGCTAGTATTGCTTTGGCTTTGACCAAGTTGACCAGTAAGAATGTCCAGTTTGTGTGGACTGAGGAGTGTGAGCGAGCATTCAATGAGTTGAAGCCTAGATTGACCACAACCCTAGTGTTGACTATTCCCACAAGCGGTGGTGGTTTAGTCATCTATAGTGATGCGTCTCATCAGGGTTTGGGGTGTGTGTTGATGCAGCATGGCAGCGTTTTCGCTTATGGCTCTAGAAAGATCATCCAGGGTCAAACAGAGGATGAGTTCTCACGTGCGAAGTTGGCAGAGTTAACTGCGGATTCGTCCATTGGCGTTCCATCGGAGTGGTCGGTGGGAAGGGATGGTGGTTTGTGGATGAATCATAGGTTGTATGTTCCGGAACGTGTTGACCTCAAGGGAGAGATTCTTCGTGAGGGGCATCGATCGCGATATACTGTGCAATTCTGGTGGAATAGAATGAAAAGGGATGTGGCAGAGTATGTTTCCAAGTGTCTTACACAACGCGTGAAGGCTGAGCATCAGAGACCTGCAGGTATGTTGAAGCCATTACCTATTCCCGTGTGGAAATGGGAGCAGATCTCAATGGATTTTGTCACTGGACTGCCTAGGTCCAAACGAAGTCACGATGCGGTGTGGGTGATCGTGGATTGTTTGACGAAATCGGCGCACTTTGGTGTCAATGACGTATTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

324

Amino Acids

37.23

Weight (kDa)

9.16

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 11 - 62 2.3e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 114 - 176 1.8e-12 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 800, 814
AccII CGCG 2 cut(s) 706, 783
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 4 cut(s) 91, 420, 575, 908
AclWI GGATC 3 cut(s) 81, 206, 219
AcsI RAATTY 1 cut(s) 134
AcvI CACGTG 1 cut(s) 551
AfaI GTAC 2 cut(s) 23, 234
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 2 cut(s) 661, 781
AgsI TTSAA 4 cut(s) 278, 367, 376, 820
AjnI CCWGG 1 cut(s) 522
AleI CACNNNNGTG 1 cut(s) 951
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
Alw26I GTCTC 3 cut(s) 208, 456, 796
AlwI GGATC 3 cut(s) 81, 206, 219
Aor13HI TCCGGA 1 cut(s) 655
ApeKI GCWGC 2 cut(s) 481, 489
ApoI RAATTY 1 cut(s) 134
AspA2I CCTAGG 1 cut(s) 884
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 1 cut(s) 888
AsuHPI GGTGA 1 cut(s) 928
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 888
AvrII CCTAGG 1 cut(s) 884
BamHI GGATCC 1 cut(s) 211
BbrPI CACGTG 1 cut(s) 551
BbvI GCAGC 2 cut(s) 493, 501
BccI CCATC 3 cut(s) 191, 604, 614
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 1 cut(s) 524
BcoDI GTCTC 3 cut(s) 208, 456, 796
BfaI CTAG 5 cut(s) 288, 381, 398, 510, 885
BfmI CTRYAG 3 cut(s) 101, 439, 807
BfuAI ACCTGC 2 cut(s) 800, 814
BglII AGATCT 1 cut(s) 855
BisI GCNGC 2 cut(s) 482, 490
BlnI CCTAGG 1 cut(s) 884
BlpI GCTNAGC 1 cut(s) 792
BlsI GCNGC 2 cut(s) 483, 491
Bme1390I CCNGG 1 cut(s) 524
Bme18I GGWCC 1 cut(s) 888
BmgT120I GGNCC 1 cut(s) 888
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 6 cut(s) 94, 436, 468, 706, 805, 895
BplI GAGNNNNNCTC 2 cut(s) 842, 874
Bpu1102I GCTNAGC 1 cut(s) 792
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 656
Bsa29I ATCGAT 1 cut(s) 700
BsaAI YACGTR 2 cut(s) 236, 551
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 4 cut(s) 175, 207, 523, 884
BsaWI WCCGGW 1 cut(s) 655
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 3 cut(s) 318, 331, 880
Bse3DI GCAATG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 84
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 700
BseDI CCNNGG 4 cut(s) 175, 207, 523, 884
BseGI GGATG 7 cut(s) 46, 202, 519, 544, 625, 639, 751
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 2 cut(s) 336, 783
BseNI ACTGG 3 cut(s) 318, 331, 880
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 2 cut(s) 493, 501
Bsh1236I CGCG 2 cut(s) 706, 783
Bsh1285I CGRYCG 1 cut(s) 704
BshVI ATCGAT 1 cut(s) 700
BsiEI CGRYCG 1 cut(s) 704
BsiSI CCGG 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 3 cut(s) 208, 456, 796
BsmBI CGTCTC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 796
Bsp119I TTCGAA 1 cut(s) 191
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 6 cut(s) 73, 211, 516, 701, 855, 918
Bsp1720I GCTNAGC 1 cut(s) 792
Bsp68I TCGCGA 1 cut(s) 706
BspACI CCGC 4 cut(s) 91, 420, 575, 908
BspCNI CTCAG 2 cut(s) 337, 784
BspDI ATCGAT 1 cut(s) 700
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 2 cut(s) 706, 783
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 2 cut(s) 800, 814
BspPI GGATC 3 cut(s) 81, 206, 219
BspT104I TTCGAA 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 164
BsrI ACTGG 3 cut(s) 318, 331, 880
BssECI CCNNGG 4 cut(s) 175, 207, 523, 884
BssMI GATC 6 cut(s) 73, 211, 516, 701, 855, 918
BssT1I CCWWGG 2 cut(s) 175, 884
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 2 cut(s) 8, 715
BstBAI YACGTR 2 cut(s) 236, 551
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 219, 345, 792
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 7 cut(s) 46, 202, 519, 544, 625, 639, 751
BstFNI CGCG 2 cut(s) 706, 783
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 6 cut(s) 76, 214, 519, 704, 858, 921
BstMAI GTCTC 3 cut(s) 208, 456, 796
BstMBI GATC 6 cut(s) 73, 211, 516, 701, 855, 918
BstMCI CGRYCG 1 cut(s) 704
BstMWI GCNNNNNNNGC 4 cut(s) 97, 293, 560, 703
BstNI CCWGG 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 522
BstSFI CTRYAG 3 cut(s) 101, 439, 807
BstSNI TACGTA 1 cut(s) 236
BstUI CGCG 2 cut(s) 706, 783
BstV1I GCAGC 2 cut(s) 493, 501
BstX2I RGATCY 2 cut(s) 211, 855
BstXI CCANNNNNNTGG 2 cut(s) 67, 603
BstYI RGATCY 2 cut(s) 211, 855
Bsu15I ATCGAT 1 cut(s) 700
BsuTUI ATCGAT 1 cut(s) 700
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 7 cut(s) 46, 202, 519, 544, 625, 639, 751
BtsIMutI CAGTG 1 cut(s) 873
BtuMI TCGCGA 1 cut(s) 706
BveI ACCTGC 2 cut(s) 800, 814
Cac8I GCNNGC 1 cut(s) 360
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 946
Cfr13I GGNCC 1 cut(s) 888
ClaI ATCGAT 1 cut(s) 700
CseI GACGC 1 cut(s) 438
Csp6I GTAC 2 cut(s) 22, 233
CspCI CAANNNNNGTGG 2 cut(s) 707, 742
CviAII CATG 3 cut(s) 77, 182, 485
CviJI RGCY 5 cut(s) 302, 379, 507, 791, 823
CviKI_1 RGCY 5 cut(s) 302, 379, 507, 791, 823
CviQI GTAC 2 cut(s) 22, 233
DdeI CTNAG 3 cut(s) 219, 345, 792
DpnI GATC 6 cut(s) 75, 213, 518, 703, 857, 920
DpnII GATC 6 cut(s) 73, 211, 516, 701, 855, 918
Eco105I TACGTA 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 175, 884
Eco31I GGTCTC 1 cut(s) 796
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 888
Eco72I CACGTG 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 522
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 175, 884
ErhI CCWWGG 2 cut(s) 175, 884
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 3 cut(s) 80, 185, 488
FatI CATG 3 cut(s) 76, 181, 484
Fnu4HI GCNGC 2 cut(s) 482, 490
FokI GGATG 7 cut(s) 53, 209, 506, 551, 632, 646, 758
Fsp4HI GCNGC 2 cut(s) 482, 490
FspBI CTAG 5 cut(s) 288, 381, 398, 510, 885
GlaI GCGC 1 cut(s) 945
GluI GCNGC 2 cut(s) 482, 490
HapII CCGG 1 cut(s) 656
HgaI GACGC 1 cut(s) 438
HhaI GCGC 1 cut(s) 946
Hin1II CATG 3 cut(s) 80, 185, 488
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 4 cut(s) 315, 405, 570, 667
HindII GTYRAC 4 cut(s) 315, 405, 570, 667
HinfI GANTC 5 cut(s) 201, 270, 578, 637, 682
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 1 cut(s) 656
HphI GGTGA 1 cut(s) 928
Hpy166II GTNNAC 5 cut(s) 315, 342, 405, 570, 667
Hpy188I TCNGA 3 cut(s) 267, 601, 801
Hpy188III TCNNGA 8 cut(s) 49, 77, 139, 510, 656, 689, 705, 902
Hpy8I GTNNAC 5 cut(s) 315, 342, 405, 570, 667
HpyAV CCTTC 5 cut(s) 187, 225, 272, 609, 781
HpyCH4III ACNGT 2 cut(s) 8, 715
HpyCH4IV ACGT 5 cut(s) 65, 235, 550, 661, 963
HpyCH4V TGCA 3 cut(s) 481, 718, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 293, 560, 703
HpyF3I CTNAG 3 cut(s) 219, 345, 792
HpySE526I ACGT 5 cut(s) 65, 235, 550, 661, 963
Hsp92II CATG 3 cut(s) 80, 185, 488
HspAI GCGC 1 cut(s) 944
Kpn2I TCCGGA 1 cut(s) 655
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 6 cut(s) 73, 211, 516, 701, 855, 918
LmnI GCTCC 1 cut(s) 850
Lsp1109I GCAGC 2 cut(s) 493, 501
LweI GCATC 6 cut(s) 94, 436, 468, 706, 805, 895
MaeI CTAG 5 cut(s) 288, 381, 398, 510, 885
MaeII ACGT 5 cut(s) 65, 235, 550, 661, 963
MaeIII GTNAC 2 cut(s) 871, 899
MalI GATC 6 cut(s) 75, 213, 518, 703, 857, 920
MboI GATC 6 cut(s) 73, 211, 516, 701, 855, 918
MboII GAAGA 1 cut(s) 677
MflI RGATCY 2 cut(s) 211, 855
MluCI AATT 3 cut(s) 134, 149, 719
MluI ACGCGT 1 cut(s) 781
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 64, 157, 220, 340, 529, 680, 685
MroI TCCGGA 1 cut(s) 655
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 2 cut(s) 601, 951
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 2 cut(s) 706, 783
MwoI GCNNNNNNNGC 4 cut(s) 97, 293, 560, 703
NdeII GATC 6 cut(s) 73, 211, 516, 701, 855, 918
NlaIII CATG 3 cut(s) 80, 185, 488
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 871, 899
NruI TCGCGA 1 cut(s) 706
NspV TTCGAA 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 951
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 362
PfeI GAWTC 4 cut(s) 270, 578, 637, 682
PkrI GCNGC 2 cut(s) 483, 491
Ple19I CGATCG 1 cut(s) 704
PleI GAGTC 1 cut(s) 209
PmaCI CACGTG 1 cut(s) 551
PmlI CACGTG 1 cut(s) 551
PpsI GAGTC 1 cut(s) 209
Ppu21I YACGTR 2 cut(s) 236, 551
Psp6I CCWGG 1 cut(s) 522
PspCI CACGTG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 888
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 2 cut(s) 211, 855
PvuI CGATCG 1 cut(s) 704
RruI TCGCGA 1 cut(s) 706
RsaI GTAC 2 cut(s) 23, 234
RsaNI GTAC 2 cut(s) 22, 233
RseI CAYNNNNRTG 2 cut(s) 601, 951
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 2 cut(s) 482, 490
Sau3AI GATC 6 cut(s) 73, 211, 516, 701, 855, 918
Sau96I GGNCC 1 cut(s) 888
SbfI CCTGCAGG 1 cut(s) 811
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 524
SdaI CCTGCAGG 1 cut(s) 811
SfaNI GCATC 6 cut(s) 94, 436, 468, 706, 805, 895
SfcI CTRYAG 3 cut(s) 101, 439, 807
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 888
SmiMI CAYNNNNRTG 2 cut(s) 601, 951
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SnaBI TACGTA 1 cut(s) 236
Sse8387I CCTGCAGG 1 cut(s) 811
Sse9I AATT 3 cut(s) 134, 149, 719
SsiI CCGC 4 cut(s) 91, 420, 575, 908
SspMI CTAG 5 cut(s) 288, 381, 398, 510, 885
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 2 cut(s) 175, 884
TaaI ACNGT 2 cut(s) 8, 715
TaiI ACGT 5 cut(s) 68, 238, 553, 664, 966
TaqI TCGA 3 cut(s) 138, 191, 700
TasI AATT 3 cut(s) 134, 149, 719
TfiI GAWTC 4 cut(s) 270, 578, 637, 682
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 2 cut(s) 871, 899
TseI GCWGC 2 cut(s) 481, 489
Tsp45I GTSAC 2 cut(s) 871, 899
TspDTI ATGAA 4 cut(s) 17, 262, 650, 752
TspGWI ACGGA 2 cut(s) 9, 196
TspRI CASTG 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 888
XapI RAATTY 1 cut(s) 134
XbaI TCTAGA 1 cut(s) 509
XmaJI CCTAGG 1 cut(s) 884
XspI CTAG 5 cut(s) 288, 381, 398, 510, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.