FvH4_4g15591

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
19368548 .. 19370010
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15591.t1

Sequence Viewer

Length: 1380 bp
ATGGAAGCGGTGTCAAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTAAAAGATTTTTCAAAGATTGCTGCTCCTCTTACAAGATTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAATGTGAGCAAAGTTTCCAAGAATTGAAGAATTACTTAACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAGCAATTGAAGCCGCATGAAGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTATCAGATTTTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGGGAGCTAAATATGAGACAGAGAAGGTGGATGGAGTTAATCAATGATTACGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATTTGGTAGCTGATGCTCTGAGTCGAAATCTCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCTGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTATCAGTAGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTGTTGTTTAAGAACCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGGTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACAGGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGGTTTGTCAGCAAGTAAAAGCTGAAAGGCAGAAGACTTCTGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGTTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGATTCACCAAGTCTGCATATTTCTTGCCAGTAGGAAAGAAGTATAAATTGGCGGAGCTTTATGTGAATGAAACTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCAAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

460

Amino Acids

53.04

Weight (kDa)

9.34

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 81 - 148 2.6e-20 RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 81 - 117 3.2e-07 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 263 - 320 1.5e-18 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
Acc65I GGTACC 1 cut(s) 1262
AccB1I GGYRCC 1 cut(s) 1262
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 6 cut(s) 8, 254, 296, 652, 714, 1148
AclWI GGATC 3 cut(s) 665, 1208, 1221
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 1 cut(s) 1232
AcuI CTGAAG 2 cut(s) 1232, 1261
AfaI GTAC 2 cut(s) 1057, 1264
AfiI CCNNNNNNNGG 3 cut(s) 138, 260, 1065
AgsI TTSAA 6 cut(s) 102, 152, 190, 250, 799, 877
AjnI CCWGG 2 cut(s) 131, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AleI CACNNNNGTG 1 cut(s) 35
Alw21I GWGCWC 2 cut(s) 211, 1246
Alw26I GTCTC 2 cut(s) 316, 403
AlwI GGATC 3 cut(s) 665, 1208, 1221
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 629, 893
ApeKI GCWGC 6 cut(s) 110, 293, 716, 839, 917, 1253
ApoI RAATTY 1 cut(s) 1232
Asp718I GGTACC 1 cut(s) 1262
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 1018
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 3 cut(s) 1018, 1093, 1096
AsuII TTCGAA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 1018
BalI TGGCCA 1 cut(s) 895
BamHI GGATCC 1 cut(s) 1213
BanI GGYRCC 1 cut(s) 1262
BanII GRGCYC 1 cut(s) 1246
BbsI GAAGAC 3 cut(s) 31, 365, 977
Bbv12I GWGCWC 2 cut(s) 211, 1246
BbvI GCAGC 6 cut(s) 97, 305, 728, 826, 929, 1265
BccI CCATC 6 cut(s) 418, 529, 685, 737, 1058, 1298
BceAI ACGGC 1 cut(s) 976
BciT130I CCWGG 2 cut(s) 133, 468
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 2 cut(s) 316, 403
BfmI CTRYAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 8 cut(s) 111, 254, 294, 714, 717, 840, 918, 1254
BlsI GCNGC 8 cut(s) 112, 255, 295, 715, 718, 841, 919, 1255
Bme1390I CCNGG 3 cut(s) 133, 468, 849
Bme18I GGWCC 1 cut(s) 1018
BmgT120I GGNCC 1 cut(s) 1018
BmiI GGNNCC 5 cut(s) 340, 712, 1019, 1215, 1264
BmrFI CCNGG 3 cut(s) 133, 468, 849
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 3 cut(s) 31, 365, 977
BpmI CTGGAG 1 cut(s) 305
Bpu14I TTCGAA 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 296, 1007
BpuMI CCSGG 1 cut(s) 849
BsaBI GATNNNNATC 1 cut(s) 1212
BsaJI CCNNGG 1 cut(s) 1029
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 1328, 1358
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 260, 1065
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 4 cut(s) 615, 632, 1004, 1124
Bse8I GATNNNNATC 1 cut(s) 1212
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 2 cut(s) 133, 468
BseDI CCNNGG 1 cut(s) 1029
BseGI GGATG 5 cut(s) 235, 429, 463, 844, 1291
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 3 cut(s) 138, 260, 1065
BseMII CTCAG 2 cut(s) 488, 1310
BseNI ACTGG 4 cut(s) 615, 632, 1004, 1124
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 6 cut(s) 97, 305, 728, 826, 929, 1265
BshFI GGCC 2 cut(s) 631, 895
BshNI GGYRCC 1 cut(s) 1262
BsiHKAI GWGCWC 2 cut(s) 211, 1246
BsiSI CCGG 3 cut(s) 227, 766, 848
BslFI GGGAC 2 cut(s) 760, 1031
BslI CCNNNNNNNGG 3 cut(s) 138, 260, 1065
BsmAI GTCTC 2 cut(s) 316, 403
BsmFI GGGAC 2 cut(s) 760, 1031
BsnI GGCC 2 cut(s) 631, 895
Bsp119I TTCGAA 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 211, 1246
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 6 cut(s) 8, 254, 296, 652, 714, 1148
BspANI GGCC 2 cut(s) 631, 895
BspCNI CTCAG 2 cut(s) 489, 1309
BspEI TCCGGA 1 cut(s) 226
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 5 cut(s) 340, 712, 1019, 1215, 1264
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 3 cut(s) 665, 1208, 1221
BspQI GCTCTTC 1 cut(s) 1251
BspT104I TTCGAA 1 cut(s) 704
BspT107I GGYRCC 1 cut(s) 1262
BsrFI RCCGGY 1 cut(s) 765
BsrI ACTGG 4 cut(s) 615, 632, 1004, 1124
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 1 cut(s) 1029
BssMI GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 2 cut(s) 133, 468
Bst4CI ACNGT 4 cut(s) 37, 663, 1076, 1171
Bst6I CTCTTC 6 cut(s) 733, 786, 794, 899, 1251, 1280
BstAPI GCANNNNNTGC 1 cut(s) 839
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 2 cut(s) 291, 567
BstDEI CTNAG 2 cut(s) 497, 1296
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 5 cut(s) 235, 429, 463, 844, 1291
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 7 cut(s) 163, 283, 364, 673, 724, 1210, 1216
BstMAI GTCTC 2 cut(s) 316, 403
BstMBI GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 250, 611, 839, 1250
BstNI CCWGG 2 cut(s) 133, 468
BstSCI CCNGG 3 cut(s) 131, 466, 847
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 6 cut(s) 97, 305, 728, 826, 929, 1265
BstV2I GAAGAC 3 cut(s) 31, 365, 977
BstX2I RGATCY 1 cut(s) 1213
BstYI RGATCY 1 cut(s) 1213
BsuRI GGCC 2 cut(s) 631, 895
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 5 cut(s) 235, 429, 463, 844, 1291
BtsI GCAGTG 1 cut(s) 1281
BtsIMutI CAGTG 3 cut(s) 33, 1011, 1281
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 2 cut(s) 291, 567
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 765
Cfr13I GGNCC 1 cut(s) 1018
Csp6I GTAC 2 cut(s) 1056, 1263
CviAII CATG 7 cut(s) 257, 278, 623, 1030, 1070, 1181, 1360
CviQI GTAC 2 cut(s) 1056, 1263
DdeI CTNAG 2 cut(s) 497, 1296
DpnI GATC 7 cut(s) 162, 282, 363, 672, 723, 1209, 1215
DpnII GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
EaeI YGGCCR 1 cut(s) 893
Eam1104I CTCTTC 6 cut(s) 733, 786, 794, 899, 1251, 1280
EarI CTCTTC 6 cut(s) 733, 786, 794, 899, 1251, 1280
EciI GGCGGA 1 cut(s) 1163
Ecl136II GAGCTC 1 cut(s) 1244
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 1 cut(s) 1246
Eco47I GGWCC 1 cut(s) 1018
Eco53kI GAGCTC 1 cut(s) 1244
Eco57I CTGAAG 2 cut(s) 1232, 1261
EcoICRI GAGCTC 1 cut(s) 1244
EcoRII CCWGG 2 cut(s) 131, 466
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 1 cut(s) 1246
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 7 cut(s) 260, 281, 626, 1033, 1073, 1184, 1363
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 760, 1031
FatI CATG 7 cut(s) 256, 277, 622, 1029, 1069, 1180, 1359
FauI CCCGC 1 cut(s) 645
FauNDI CATATG 1 cut(s) 835
Fnu4HI GCNGC 8 cut(s) 111, 254, 294, 714, 717, 840, 918, 1254
FokI GGATG 5 cut(s) 242, 436, 450, 831, 1278
FriOI GRGCYC 1 cut(s) 1246
Fsp4HI GCNGC 8 cut(s) 111, 254, 294, 714, 717, 840, 918, 1254
GlaI GCGC 1 cut(s) 83
GluI GCNGC 8 cut(s) 111, 254, 294, 714, 717, 840, 918, 1254
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 2 cut(s) 631, 895
HapII CCGG 3 cut(s) 227, 766, 848
HhaI GCGC 1 cut(s) 84
Hin1II CATG 7 cut(s) 260, 281, 626, 1033, 1073, 1184, 1363
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 6 cut(s) 46, 370, 499, 748, 1098, 1193
HpaII CCGG 3 cut(s) 227, 766, 848
HphI GGTGA 3 cut(s) 1018, 1093, 1096
Hpy166II GTNNAC 2 cut(s) 387, 1049
Hpy188I TCNGA 8 cut(s) 160, 351, 498, 870, 1207, 1299, 1329, 1370
Hpy188III TCNNGA 6 cut(s) 227, 278, 284, 978, 1190, 1211
Hpy8I GTNNAC 2 cut(s) 387, 1049
HpyAV CCTTC 5 cut(s) 130, 254, 411, 684, 871
HpyCH4III ACNGT 4 cut(s) 37, 663, 1076, 1171
HpyCH4V TGCA 6 cut(s) 293, 450, 833, 917, 1112, 1363
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 611, 839, 1250
HpyF3I CTNAG 2 cut(s) 497, 1296
Hsp92II CATG 7 cut(s) 260, 281, 626, 1033, 1073, 1184, 1363
HspAI GCGC 1 cut(s) 82
Kpn2I TCCGGA 1 cut(s) 226
KpnI GGTACC 1 cut(s) 1266
Kzo9I GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
LguI GCTCTTC 1 cut(s) 1251
LmnI GCTCC 8 cut(s) 118, 214, 286, 338, 397, 710, 1150, 1241
Lsp1109I GCAGC 6 cut(s) 97, 305, 728, 826, 929, 1265
LweI GCATC 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 37
MalI GATC 7 cut(s) 162, 282, 363, 672, 723, 1209, 1215
MboI GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 1213
MhlI GDGCHC 2 cut(s) 211, 1246
MlsI TGGCCA 1 cut(s) 895
MluNI TGGCCA 1 cut(s) 895
MlyI GAGTC 3 cut(s) 379, 508, 742
Mox20I TGGCCA 1 cut(s) 895
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 895
MseI TTAA 4 cut(s) 144, 200, 431, 759
MslI CAYNNNNRTG 3 cut(s) 35, 860, 1028
Msp20I TGGCCA 1 cut(s) 895
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 227, 766, 848
MspR9I CCNGG 3 cut(s) 133, 468, 849
MunI CAATTG 1 cut(s) 245
MvaI CCWGG 2 cut(s) 133, 468
MwoI GCNNNNNNNGC 4 cut(s) 250, 611, 839, 1250
NciI CCSGG 1 cut(s) 849
NcoI CCATGG 1 cut(s) 1029
NdeI CATATG 1 cut(s) 835
NdeII GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
NlaIII CATG 7 cut(s) 260, 281, 626, 1033, 1073, 1184, 1363
NlaIV GGNNCC 5 cut(s) 340, 712, 1019, 1215, 1264
NmuCI GTSAC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 704
OliI CACNNNNGTG 1 cut(s) 35
PagI TCATGA 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 1251
PcsI WCGNNNNNNNCGW 1 cut(s) 1216
PfeI GAWTC 3 cut(s) 46, 1098, 1193
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 8 cut(s) 112, 255, 295, 715, 718, 841, 919, 1255
PleI GAGTC 3 cut(s) 378, 507, 742
PpsI GAGTC 3 cut(s) 378, 507, 742
Psp124BI GAGCTC 1 cut(s) 1246
Psp6I CCWGG 2 cut(s) 131, 466
PspGI CCWGG 2 cut(s) 131, 466
PspN4I GGNNCC 5 cut(s) 340, 712, 1019, 1215, 1264
PspPI GGNCC 1 cut(s) 1018
PsuI RGATCY 1 cut(s) 1213
RsaI GTAC 2 cut(s) 1057, 1264
RsaNI GTAC 2 cut(s) 1056, 1263
RseI CAYNNNNRTG 3 cut(s) 35, 860, 1028
SacI GAGCTC 1 cut(s) 1246
SapI GCTCTTC 1 cut(s) 1251
SaqAI TTAA 4 cut(s) 144, 200, 431, 759
SatI GCNGC 8 cut(s) 111, 254, 294, 714, 717, 840, 918, 1254
Sau3AI GATC 7 cut(s) 160, 280, 361, 670, 721, 1207, 1213
Sau96I GGNCC 1 cut(s) 1018
SchI GAGTC 3 cut(s) 379, 508, 742
ScrFI CCNGG 3 cut(s) 133, 468, 849
SduI GDGCHC 2 cut(s) 211, 1246
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 704
SinI GGWCC 1 cut(s) 1018
SmiMI CAYNNNNRTG 3 cut(s) 35, 860, 1028
SmlI CTYRAG 2 cut(s) 311, 986
SmoI CTYRAG 2 cut(s) 311, 986
SsiI CCGC 6 cut(s) 8, 254, 296, 652, 714, 1148
SstI GAGCTC 1 cut(s) 1246
StyD4I CCNGG 3 cut(s) 131, 466, 847
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 4 cut(s) 37, 663, 1076, 1171
TaqI TCGA 4 cut(s) 502, 685, 704, 1219
TauI GCSGC 2 cut(s) 256, 716
TfiI GAWTC 3 cut(s) 46, 1098, 1193
Tru1I TTAA 4 cut(s) 144, 200, 431, 759
Tru9I TTAA 4 cut(s) 144, 200, 431, 759
TscAI CASTG 3 cut(s) 40, 1011, 1288
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 6 cut(s) 110, 293, 716, 839, 917, 1253
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 6 cut(s) 273, 611, 804, 1169, 1179, 1280
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 40, 1011, 1288
VpaK11BI GGWCC 1 cut(s) 1018
XapI RAATTY 1 cut(s) 1232
XcmI CCANNNNNNNNNTGG 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.