Rroxscaffold_3G00273190

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000094
Physical Location & Seq
Forward (+)
65048224 .. 65065011
16788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273190.1

Sequence Viewer

Length: 1149 bp
ATGCAAGCTTCCTTACAGGAAGCCATGGCCACTTCGTTGACCAATTTCAAGTCCATGCTGATGGATGAGTTCAAGCAACAGCTCACAACCATCGTCAAGGAGCACATACCTACTCCTTCGCTGGAGCTCGTCAATCAGAGGAGCATGGCGATTCCTCAGCCGGATGGAACAGTGAGATTTGGATCTCTACCTTCGCCGGGCGCCCCATCTCCATCAGTGACCGCTTCGTGTTCATCTCCAGTGGCTCGATCTGAGGGTAACGCTTCCCGACTTAACAACTCTCAATTGGTTACTGGTGCTTTTAATGACGGTGTGGAATCTAACTCTTCTCTGCAAGTTACTAGTGGGGTGGTTGCTACCACTGTGGCTACTATTCTTGGTTTGGATAATGTTAATTTTGTTCACGGTAGTAGTAGAGATCAGACTATGGTGAATGATGTTGGATCCAAACCCTTGCATAGTTTTGGGTCAATGGGATATGTTGCTCACTCTGTTGGTAACACCTTTAACCATCAGTCTCACCATCTGAGCAACTCACAACCTAGCCCATATCATGCTGGAATGATGCAAGGAAATATGCTGAATATGCAGGGAGTTAGTCAAACAATGCAAGGTCCTGATCCTTTTACAATGACTTACTCGGGACCTTATTCCACTACCATGATCAATTTCCCATCATCAGTTGTCCAACCCTCCCTGTCATTTGCATCACCACAATTTTCACATTCAATACCACGACCACTTTACATACCACCTACTTATGCCACTACTACTACCACTCACCATGTCTCGAACACTCATCAGCATCCATTTCAGGTCGCTTCTCCTAATTATGGTTACCCACTCAACCAGGTATACCCTAATCCCTTGTTCACAACCCATGTTGATCCAAATTTACCCACAATGAAGCAGATGAGATTGGAGTTCAGTGTGTTTAGTGGGGGTGATCCTGTTGAGTGGCTTAACAAGGCAGATCAGTACTTTGAGTTTTATCAAATACCTGAGGATAGGAAGCTACCAATTGCCACCATGCATCTGTCGGATAAAGCCTCGGATAGATGGTATATGTTTCGGCATGAATTTCCAAGTACATGGCAGGGGTTGGCTGATTTGCTAATGCGGGAATTCAGTAGCTACAATAGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

382

Amino Acids

42.12

Weight (kDa)

6.22

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 855
AciI CCGC 2 cut(s) 222, 1120
AclWI GGATC 6 cut(s) 190, 438, 451, 614, 881, 941
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 892, 1079, 1124
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 980, 1090
AfiI CCNNNNNNNGG 2 cut(s) 197, 833
AgsI TTSAA 3 cut(s) 49, 73, 729
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 849
AluBI AGCT 5 cut(s) 8, 82, 127, 1015, 1134
AluI AGCT 5 cut(s) 8, 82, 127, 1015, 1134
Alw21I GWGCWC 2 cut(s) 105, 129
Alw26I GTCTC 2 cut(s) 522, 793
AlwI GGATC 6 cut(s) 190, 438, 451, 614, 881, 941
Ama87I CYCGRG 1 cut(s) 640
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 3 cut(s) 892, 1079, 1124
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 614, 644, 1143
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 5 cut(s) 442, 512, 702, 773, 956
AvaI CYCGRG 1 cut(s) 640
AvaII GGWCC 3 cut(s) 614, 644, 1143
AxyI CCTNAGG 1 cut(s) 1002
BalI TGGCCA 1 cut(s) 29
BamHI GGATCC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 105, 129
BbvCI CCTCAGC 1 cut(s) 156
BccI CCATC 9 cut(s) 55, 98, 158, 214, 220, 519, 531, 682, 1053
BciT130I CCWGG 1 cut(s) 851
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 522, 793
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 2 cut(s) 342, 543
BfoI RGCGCY 1 cut(s) 204
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 2 cut(s) 198, 851
Bme18I GGWCC 3 cut(s) 614, 644, 1143
BmeT110I CYCGRG 1 cut(s) 640
BmgT120I GGNCC 3 cut(s) 614, 644, 1143
BmiI GGNNCC 3 cut(s) 202, 445, 645
BmrFI CCNGG 2 cut(s) 198, 851
BmsI GCATC 4 cut(s) 555, 716, 814, 1042
BpmI CTGGAG 2 cut(s) 143, 222
Bpu10I CCTNAGC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 24, 1050
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 833
Bse1I ACTGG 2 cut(s) 239, 298
Bse21I CCTNAGG 1 cut(s) 1002
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 2 cut(s) 24, 1050
BseGI GGATG 3 cut(s) 70, 169, 805
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 197, 833
BseMII CTCAG 4 cut(s) 170, 243, 518, 993
BseNI ACTGG 2 cut(s) 239, 298
BseRI GAGGAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 105, 129
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 2 cut(s) 161, 197
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 197, 833
BsmAI GTCTC 2 cut(s) 522, 793
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 105, 129
Bsp143I GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 2 cut(s) 222, 1120
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 4 cut(s) 169, 244, 519, 994
BspLI GGNNCC 3 cut(s) 202, 445, 645
BspPI GGATC 6 cut(s) 190, 438, 451, 614, 881, 941
BspT107I GGYRCC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 239, 298
BssECI CCNNGG 2 cut(s) 24, 1050
BssMI GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
BssNAI GTATAC 1 cut(s) 856
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 24
Bst1107I GTATAC 1 cut(s) 856
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 4 cut(s) 172, 311, 364, 407
Bst6I CTCTTC 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 156, 252, 527, 1002
BstDSI CCRYGG 1 cut(s) 24
BstEII GGTNACC 1 cut(s) 836
BstF5I GGATG 3 cut(s) 70, 169, 805
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 9 cut(s) 185, 251, 421, 446, 622, 666, 889, 949, 976
BstMAI GTCTC 2 cut(s) 522, 793
BstMBI GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 1 cut(s) 851
BstPI GGTNACC 1 cut(s) 836
BstSCI CCNGG 2 cut(s) 196, 849
BstX2I RGATCY 2 cut(s) 182, 443
BstXI CCANNNNNNTGG 2 cut(s) 61, 1092
BstYI RGATCY 2 cut(s) 182, 443
BstZ17I GTATAC 1 cut(s) 856
Bsu36I CCTNAGG 1 cut(s) 1002
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 70, 169, 805
BtsIMutI CAGTG 5 cut(s) 177, 222, 246, 360, 934
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 614, 644, 1143
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 2 cut(s) 979, 1089
CviQI GTAC 2 cut(s) 979, 1089
DdeI CTNAG 4 cut(s) 156, 252, 527, 1002
DinI GGCGCC 1 cut(s) 202
DpnI GATC 9 cut(s) 184, 250, 420, 445, 621, 665, 888, 948, 975
DpnII GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 614, 644, 1143
Eco53kI GAGCTC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 640
Eco91I GGTNACC 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 3 cut(s) 614, 644, 1143
EcoO65I GGTNACC 1 cut(s) 836
EcoRI GAATTC 1 cut(s) 1124
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 1035
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 24
FaqI GGGAC 1 cut(s) 657
FauI CCCGC 1 cut(s) 1113
FbaI TGATCA 1 cut(s) 663
FblI GTMKAC 1 cut(s) 855
FokI GGATG 3 cut(s) 77, 176, 792
FriOI GRGCYC 1 cut(s) 129
FspBI CTAG 2 cut(s) 342, 543
GlaI GCGC 1 cut(s) 202
GsuI CTGGAG 2 cut(s) 143, 222
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 161, 197
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 201
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 151, 317
HpaII CCGG 2 cut(s) 161, 197
HphI GGTGA 5 cut(s) 442, 512, 702, 773, 956
Hpy166II GTNNAC 4 cut(s) 39, 403, 856, 873
Hpy188I TCNGA 6 cut(s) 138, 253, 423, 528, 1042, 1054
Hpy188III TCNNGA 5 cut(s) 267, 617, 642, 790, 1146
Hpy8I GTNNAC 4 cut(s) 39, 403, 856, 873
HpyAV CCTTC 2 cut(s) 126, 201
HpyCH4III ACNGT 4 cut(s) 172, 311, 364, 407
HpyCH4V TGCA 8 cut(s) 4, 334, 457, 568, 589, 610, 707, 1033
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
HpyF3I CTNAG 4 cut(s) 156, 252, 527, 1002
Hsp92I GRCGYC 1 cut(s) 201
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
LmnI GCTCC 3 cut(s) 100, 124, 141
LweI GCATC 4 cut(s) 555, 716, 814, 1042
MabI ACCWGGT 1 cut(s) 849
MaeI CTAG 2 cut(s) 342, 543
MaeIII GTNAC 6 cut(s) 217, 257, 289, 337, 497, 836
MalI GATC 9 cut(s) 184, 250, 420, 445, 621, 665, 888, 948, 975
MboI GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
MboII GAAGA 1 cut(s) 318
MfeI CAATTG 2 cut(s) 284, 1020
MflI RGATCY 2 cut(s) 182, 443
MhlI GDGCHC 2 cut(s) 105, 129
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
Mly113I GGCGCC 1 cut(s) 201
MmeI TCCRAC 3 cut(s) 421, 712, 1020
MnlI CCTC 6 cut(s) 132, 165, 247, 703, 997, 1060
Mox20I TGGCCA 1 cut(s) 29
Mph1103I ATGCAT 1 cut(s) 1035
MscI TGGCCA 1 cut(s) 29
MseI TTAA 5 cut(s) 273, 303, 393, 507, 963
MslI CAYNNNNRTG 2 cut(s) 59, 659
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 2 cut(s) 161, 197
MspR9I CCNGG 2 cut(s) 198, 851
MunI CAATTG 2 cut(s) 284, 1020
MvaI CCWGG 1 cut(s) 851
MwoI GCNNNNNNNGC 1 cut(s) 586
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 1 cut(s) 198
NcoI CCATGG 1 cut(s) 24
NdeII GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
NlaIV GGNNCC 3 cut(s) 202, 445, 645
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 151, 317
PluTI GGCGCC 1 cut(s) 204
PpuMI RGGWCCY 3 cut(s) 614, 644, 1143
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 3 cut(s) 614, 644, 1143
Psp6I CCWGG 1 cut(s) 849
PspEI GGTNACC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 3 cut(s) 202, 445, 645
PspPI GGNCC 3 cut(s) 614, 644, 1143
PspPPI RGGWCCY 3 cut(s) 614, 644, 1143
PsuI RGATCY 2 cut(s) 182, 443
RsaI GTAC 2 cut(s) 980, 1090
RsaNI GTAC 2 cut(s) 979, 1089
RseI CAYNNNNRTG 2 cut(s) 59, 659
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 5 cut(s) 273, 303, 393, 507, 963
Sau3AI GATC 9 cut(s) 182, 248, 418, 443, 619, 663, 886, 946, 973
Sau96I GGNCC 3 cut(s) 614, 644, 1143
ScaI AGTACT 1 cut(s) 980
ScrFI CCNGG 2 cut(s) 198, 851
SduI GDGCHC 2 cut(s) 105, 129
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 4 cut(s) 555, 716, 814, 1042
SfoI GGCGCC 1 cut(s) 202
SinI GGWCC 3 cut(s) 614, 644, 1143
SmiMI CAYNNNNRTG 2 cut(s) 59, 659
SpeI ACTAGT 1 cut(s) 341
SsiI CCGC 2 cut(s) 222, 1120
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 2 cut(s) 342, 543
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 196, 849
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 4 cut(s) 172, 311, 364, 407
TaqI TCGA 2 cut(s) 247, 791
TatI WGTACW 2 cut(s) 978, 1088
TfiI GAWTC 2 cut(s) 151, 317
Tru1I TTAA 5 cut(s) 273, 303, 393, 507, 963
Tru9I TTAA 5 cut(s) 273, 303, 393, 507, 963
TscAI CASTG 5 cut(s) 177, 222, 246, 367, 934
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 222, 920, 1092
TspRI CASTG 5 cut(s) 177, 222, 246, 367, 934
VpaK11BI GGWCC 3 cut(s) 614, 644, 1143
XapI RAATTY 3 cut(s) 892, 1079, 1124
XmiI GTMKAC 1 cut(s) 855
XspI CTAG 2 cut(s) 342, 543
ZrmI AGTACT 1 cut(s) 980
Zsp2I ATGCAT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.