transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 310, 532 |
| AciI | CCGC | 5 cut(s) | 30, 128, 308, 347, 587 |
| AcsI | RAATTY | 1 cut(s) | 425 |
| AfaI | GTAC | 3 cut(s) | 353, 508, 658 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 277, 343, 640 |
| AflIII | ACRYGT | 1 cut(s) | 503 |
| AgsI | TTSAA | 2 cut(s) | 160, 469 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 592, 624 |
| AleI | CACNNNNGTG | 1 cut(s) | 323 |
| AluBI | AGCT | 2 cut(s) | 181, 287 |
| AluI | AGCT | 2 cut(s) | 181, 287 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| Ama87I | CYCGRG | 1 cut(s) | 511 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| ApoI | RAATTY | 1 cut(s) | 425 |
| AsuC2I | CCSGG | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 5 cut(s) | 310, 337, 394, 511, 623 |
| AvaI | CYCGRG | 1 cut(s) | 511 |
| BaeGI | GKGCMC | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 82 |
| BbvI | GCAGC | 1 cut(s) | 296 |
| BceAI | ACGGC | 2 cut(s) | 379, 566 |
| BcnI | CCSGG | 1 cut(s) | 53 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfaI | CTAG | 1 cut(s) | 570 |
| BfmI | CTRYAG | 2 cut(s) | 288, 686 |
| BisI | GCNGC | 2 cut(s) | 30, 285 |
| BlpI | GCTNAGC | 1 cut(s) | 577 |
| BlsI | GCNGC | 2 cut(s) | 31, 286 |
| Bme1390I | CCNGG | 1 cut(s) | 53 |
| BmeT110I | CYCGRG | 1 cut(s) | 511 |
| BmrFI | CCNGG | 1 cut(s) | 53 |
| BpiI | GAAGAC | 1 cut(s) | 82 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 577 |
| BpuMI | CCSGG | 1 cut(s) | 53 |
| BsaAI | YACGTR | 2 cut(s) | 506, 560 |
| BsaJI | CCNNGG | 3 cut(s) | 321, 337, 512 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 277, 343, 640 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| BseDI | CCNNGG | 3 cut(s) | 321, 337, 512 |
| BseGI | GGATG | 1 cut(s) | 442 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 277, 343, 640 |
| BseMII | CTCAG | 2 cut(s) | 266, 287 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BseSI | GKGCMC | 1 cut(s) | 240 |
| BseXI | GCAGC | 1 cut(s) | 296 |
| Bsh1236I | CGCG | 2 cut(s) | 310, 532 |
| BsiHKCI | CYCGRG | 1 cut(s) | 511 |
| BsiSI | CCGG | 1 cut(s) | 52 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 277, 343, 640 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsoBI | CYCGRG | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 577 |
| BspACI | CCGC | 5 cut(s) | 30, 128, 308, 347, 587 |
| BspCNI | CTCAG | 2 cut(s) | 265, 286 |
| BspFNI | CGCG | 2 cut(s) | 310, 532 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 3 cut(s) | 321, 337, 512 |
| BssMI | GATC | 1 cut(s) | 217 |
| BssT1I | CCWWGG | 1 cut(s) | 337 |
| Bst4CI | ACNGT | 1 cut(s) | 316 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstBAI | YACGTR | 2 cut(s) | 506, 560 |
| BstDEI | CTNAG | 5 cut(s) | 117, 189, 252, 273, 577 |
| BstF5I | GGATG | 1 cut(s) | 442 |
| BstFNI | CGCG | 2 cut(s) | 310, 532 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 29, 469 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstSCI | CCNGG | 1 cut(s) | 51 |
| BstSFI | CTRYAG | 2 cut(s) | 288, 686 |
| BstSLI | GKGCMC | 1 cut(s) | 240 |
| BstUI | CGCG | 2 cut(s) | 310, 532 |
| BstV1I | GCAGC | 1 cut(s) | 296 |
| BstV2I | GAAGAC | 1 cut(s) | 82 |
| BtsCI | GGATG | 1 cut(s) | 442 |
| Csp6I | GTAC | 3 cut(s) | 352, 507, 657 |
| CviAII | CATG | 2 cut(s) | 134, 485 |
| CviJI | RGCY | 6 cut(s) | 29, 181, 287, 545, 581, 606 |
| CviKI_1 | RGCY | 6 cut(s) | 29, 181, 287, 545, 581, 606 |
| CviQI | GTAC | 3 cut(s) | 352, 507, 657 |
| DdeI | CTNAG | 5 cut(s) | 117, 189, 252, 273, 577 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 1 cut(s) | 337 |
| Eco88I | CYCGRG | 1 cut(s) | 511 |
| EcoT14I | CCWWGG | 1 cut(s) | 337 |
| ErhI | CCWWGG | 1 cut(s) | 337 |
| FaeI | CATG | 2 cut(s) | 137, 488 |
| FaiI | YATR | 6 cut(s) | 38, 135, 184, 186, 486, 688 |
| FatI | CATG | 2 cut(s) | 133, 484 |
| FauI | CCCGC | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 285 |
| FokI | GGATG | 1 cut(s) | 449 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 285 |
| FspBI | CTAG | 1 cut(s) | 570 |
| GluI | GCNGC | 2 cut(s) | 30, 285 |
| HapII | CCGG | 1 cut(s) | 52 |
| Hin1II | CATG | 2 cut(s) | 137, 488 |
| HincII | GTYRAC | 3 cut(s) | 268, 399, 408 |
| HindII | GTYRAC | 3 cut(s) | 268, 399, 408 |
| HpaI | GTTAAC | 1 cut(s) | 408 |
| HpaII | CCGG | 1 cut(s) | 52 |
| HphI | GGTGA | 5 cut(s) | 310, 337, 394, 511, 623 |
| Hpy166II | GTNNAC | 3 cut(s) | 268, 399, 408 |
| Hpy188I | TCNGA | 3 cut(s) | 276, 360, 621 |
| Hpy8I | GTNNAC | 3 cut(s) | 268, 399, 408 |
| HpyAV | CCTTC | 4 cut(s) | 271, 409, 563, 658 |
| HpyCH4III | ACNGT | 1 cut(s) | 316 |
| HpyCH4IV | ACGT | 2 cut(s) | 505, 559 |
| HpyCH4V | TGCA | 3 cut(s) | 23, 284, 488 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 29, 469 |
| HpyF3I | CTNAG | 5 cut(s) | 117, 189, 252, 273, 577 |
| HpySE526I | ACGT | 2 cut(s) | 505, 559 |
| Hsp92II | CATG | 2 cut(s) | 137, 488 |
| KspAI | GTTAAC | 1 cut(s) | 408 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 2 cut(s) | 130, 301 |
| LpnPI | CCDG | 9 cut(s) | 39, 65, 92, 191, 218, 239, 473, 504, 523 |
| Lsp1109I | GCAGC | 1 cut(s) | 296 |
| MaeI | CTAG | 1 cut(s) | 570 |
| MaeII | ACGT | 2 cut(s) | 505, 559 |
| MaeIII | GTNAC | 3 cut(s) | 316, 499, 526 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MboII | GAAGA | 2 cut(s) | 82, 172 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MluCI | AATT | 1 cut(s) | 425 |
| MmeI | TCCRAC | 1 cut(s) | 85 |
| MnlI | CCTC | 8 cut(s) | 156, 162, 282, 316, 396, 405, 507, 527 |
| MseI | TTAA | 3 cut(s) | 369, 407, 423 |
| MslI | CAYNNNNRTG | 1 cut(s) | 323 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MspI | CCGG | 1 cut(s) | 52 |
| MspR9I | CCNGG | 1 cut(s) | 53 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MvnI | CGCG | 2 cut(s) | 310, 532 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 29, 469 |
| NciI | CCSGG | 1 cut(s) | 53 |
| NdeII | GATC | 1 cut(s) | 217 |
| NlaIII | CATG | 2 cut(s) | 137, 488 |
| NmuCI | GTSAC | 3 cut(s) | 316, 499, 526 |
| NspI | RCATGY | 1 cut(s) | 137 |
| OliI | CACNNNNGTG | 1 cut(s) | 323 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 407 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PkrI | GCNGC | 2 cut(s) | 31, 286 |
| Ppu21I | YACGTR | 2 cut(s) | 506, 560 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| RsaI | GTAC | 3 cut(s) | 353, 508, 658 |
| RsaNI | GTAC | 3 cut(s) | 352, 507, 657 |
| RseI | CAYNNNNRTG | 1 cut(s) | 323 |
| SaqAI | TTAA | 3 cut(s) | 369, 407, 423 |
| SatI | GCNGC | 2 cut(s) | 30, 285 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| ScrFI | CCNGG | 1 cut(s) | 53 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SfcI | CTRYAG | 2 cut(s) | 288, 686 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 323 |
| Sse9I | AATT | 1 cut(s) | 425 |
| SsiI | CCGC | 5 cut(s) | 30, 128, 308, 347, 587 |
| SspMI | CTAG | 1 cut(s) | 570 |
| StyD4I | CCNGG | 1 cut(s) | 51 |
| StyI | CCWWGG | 1 cut(s) | 337 |
| TaaI | ACNGT | 1 cut(s) | 316 |
| TaiI | ACGT | 2 cut(s) | 508, 562 |
| TaqI | TCGA | 3 cut(s) | 122, 139, 651 |
| TasI | AATT | 1 cut(s) | 425 |
| TauI | GCSGC | 1 cut(s) | 32 |
| Tru1I | TTAA | 3 cut(s) | 369, 407, 423 |
| Tru9I | TTAA | 3 cut(s) | 369, 407, 423 |
| TseFI | GTSAC | 3 cut(s) | 316, 499, 526 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 3 cut(s) | 316, 499, 526 |
| TspDTI | ATGAA | 2 cut(s) | 62, 82 |
| XapI | RAATTY | 1 cut(s) | 425 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 570 |