Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Reverse (-)

20654138 .. 20655595

Gene Structure 1458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAACCGTGTGTTCAGTCCGTACTTGGATAAGTTTGTGGTAGTGTTCGTGGATGATATTTTGGTTTATTCCAAGACGTTGGAGGACCATGATAAGCATCTGCGGATTGTGCTACAACTTTTGAGAGAAAAGGAATTGTTTGCGAAATTCGAGAAGTGCGAATTTTGGCAAAGGGAGGTCAAGTTCCTTGGTCATGTCATTTCGAAGGATGGAATCTCTGTGGATCCTTCTAAGGTGGAAGCAGTGATGAACTGGGGCCAACCCACTACAGTTACTGAGGTACGTAGTTTCCTGGGTTTGGCAGGTTATTATCGGAGATTCATTGAGGGATTTTCCAGCATTGCTTCGGCTTTGACCAAGTTGACAAGGAAGAATGTCCAGTTTGTATGGACTGAGGAATGTGAACGAGCATTCAATGAGTTGAAGGCTAGATTGACCACAGCCCCAGTATTGACTATTCCCACAAGCGGTGGTGATTTAGTTATCTATAGTGATGCGTCTCATCAAGGTTTGGGATGTGTATTGATGCAGCATGGCGGTGTTGTCGCTTATGGTTCTAGACAGATCATTCAAGGTCAGAAAGAGGATGAGTTCTCACGTGCGAAGTTGGCAGAGTTAGCTGCAGATGTACCCATTGATGTTCCATCTGAGTGGACGGTGGGAGTAGATGGTGGTTTGAGGTTGAACCATAGGTTGTATGTTCCGGATCGTGTTGACCTCAGGGGAGAGATTCTTCGTCAGGGACATCGATCGCGGTATACTGTGCAATTCTGGTGGAATGGAATGAAAAAGGACGTGGCAGAGTACGTTTCCAAGTGTCTTACTTGCCAACGTGTGAAGGCTGAGCATCAGAGACCTGCAGGTATGTTGAAGCCATTACCTATTCCCTTATGGAAGTGGGAGCAGATCTCGATGGATTTTGTCACTGGACTGCCTAGGTCCCAACGAAGTCACGATGCAGTGTGGGTGATCGTGGATCGTTTGACGAAATCAGCGCATTTCCTTCCGTGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

338

Amino Acids

38.68

Weight (kDa)

8.79

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	1 - 67	6.8e-14	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	130 - 194	1.6e-15	RNase H-like domain found in reverse transcriptase
Integrase_H2C2	PF17921	256 - 281	9.2e-09	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	293, 851, 865
AccI	GTMKAC	1 cut(s)	758
AccII	CGCG	1 cut(s)	754
AccIII	TCCGGA	1 cut(s)	703
AciI	CCGC	4 cut(s)	103, 468, 537, 754
AclWI	GGATC	4 cut(s)	218, 231, 714, 984
AcsI	RAATTY	2 cut(s)	146, 161
AcvI	CACGTG	1 cut(s)	599
AfaI	GTAC	4 cut(s)	23, 282, 630, 806
AfiI	CCNNNNNNNGG	2 cut(s)	298, 467
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	5 cut(s)	415, 424, 572, 685, 871
AjiI	CACGTC	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	1 cut(s)	620
AluI	AGCT	1 cut(s)	620
Alw26I	GTCTC	2 cut(s)	504, 847
AlwI	GGATC	4 cut(s)	218, 231, 714, 984
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	703
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	529, 620
ApoI	RAATTY	2 cut(s)	146, 161
AspA2I	CCTAGG	1 cut(s)	935
AspLEI	GCGC	1 cut(s)	997
AspS9I	GGNCC	3 cut(s)	85, 256, 939
AsuHPI	GGTGA	2 cut(s)	485, 979
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	85, 939
AvrII	CCTAGG	1 cut(s)	935
AxyI	CCTNAGG	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	223
BbrPI	CACGTG	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	541, 607
BccI	CCATC	4 cut(s)	203, 652, 662, 907
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	504, 847
BfaI	CTAG	3 cut(s)	429, 558, 936
BfmI	CTRYAG	4 cut(s)	267, 487, 621, 858
BfuAI	ACCTGC	3 cut(s)	293, 851, 865
BglII	AGATCT	1 cut(s)	906
BisI	GCNGC	2 cut(s)	530, 621
BlnI	CCTAGG	1 cut(s)	935
BlpI	GCTNAGC	1 cut(s)	843
BlsI	GCNGC	2 cut(s)	531, 622
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	2 cut(s)	85, 939
BmgBI	CACGTC	1 cut(s)	796
BmgT120I	GGNCC	3 cut(s)	85, 256, 939
BmiI	GGNNCC	3 cut(s)	225, 257, 941
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	2 cut(s)	262, 440
BmsI	GCATC	5 cut(s)	106, 484, 516, 856, 946
BmuI	ACTGGG	2 cut(s)	262, 440
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
Bpu1102I	GCTNAGC	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	748
BsaAI	YACGTR	2 cut(s)	284, 599
BsaBI	GATNNNNATC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	847
BsaJI	CCNNGG	3 cut(s)	187, 292, 935
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 467
Bse1I	ACTGG	4 cut(s)	257, 379, 446, 931
Bse21I	CCTNAGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	3 cut(s)	187, 292, 935
BseGI	GGATG	4 cut(s)	58, 214, 521, 592
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	298, 467
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	5 cut(s)	267, 384, 639, 733, 834
BseNI	ACTGG	4 cut(s)	257, 379, 446, 931
BseXI	GCAGC	2 cut(s)	541, 607
Bsh1236I	CGCG	1 cut(s)	754
Bsh1285I	CGRYCG	1 cut(s)	752
BshFI	GGCC	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	748
BsiEI	CGRYCG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	2 cut(s)	756, 925
BslI	CCNNNNNNNGG	2 cut(s)	298, 467
BsmAI	GTCTC	2 cut(s)	504, 847
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	756, 925
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	847
Bsp119I	TTCGAA	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	703
Bsp143I	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
Bsp1720I	GCTNAGC	1 cut(s)	843
BspACI	CCGC	4 cut(s)	103, 468, 537, 754
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	5 cut(s)	268, 385, 640, 732, 835
BspDI	ATCGAT	1 cut(s)	748
BspEI	TCCGGA	1 cut(s)	703
BspFNI	CGCG	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	225, 257, 941
BspMAI	CTGCAG	2 cut(s)	625, 862
BspMI	ACCTGC	3 cut(s)	293, 851, 865
BspPI	GGATC	4 cut(s)	218, 231, 714, 984
BspT104I	TTCGAA	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	847
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	4 cut(s)	257, 379, 446, 931
BssECI	CCNNGG	3 cut(s)	187, 292, 935
BssMI	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
BssNAI	GTATAC	1 cut(s)	759
BssT1I	CCWWGG	2 cut(s)	187, 935
Bst1107I	GTATAC	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	4 cut(s)	8, 271, 658, 763
BstBAI	YACGTR	2 cut(s)	284, 599
BstBI	TTCGAA	1 cut(s)	203
BstDEI	CTNAG	6 cut(s)	231, 276, 393, 648, 719, 843
BstF5I	GGATG	4 cut(s)	58, 214, 521, 592
BstFNI	CGCG	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	997
BstKTI	GATC	7 cut(s)	226, 567, 709, 752, 909, 972, 979
BstMAI	GTCTC	2 cut(s)	504, 847
BstMBI	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
BstMCI	CGRYCG	1 cut(s)	752
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 608, 617
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	4 cut(s)	267, 487, 621, 858
BstSNI	TACGTA	1 cut(s)	284
BstUI	CGCG	1 cut(s)	754
BstV1I	GCAGC	2 cut(s)	541, 607
BstX2I	RGATCY	2 cut(s)	223, 906
BstXI	CCANNNNNNTGG	2 cut(s)	79, 651
BstYI	RGATCY	2 cut(s)	223, 906
BstZ17I	GTATAC	1 cut(s)	759
Bsu15I	ATCGAT	1 cut(s)	748
Bsu36I	CCTNAGG	1 cut(s)	719
BsuRI	GGCC	1 cut(s)	258
BsuTUI	ATCGAT	1 cut(s)	748
BtrI	CACGTC	1 cut(s)	796
BtsCI	GGATG	4 cut(s)	58, 214, 521, 592
BtsI	GCAGTG	2 cut(s)	249, 966
BtsIMutI	CAGTG	3 cut(s)	249, 924, 966
BveI	ACCTGC	3 cut(s)	293, 851, 865
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	997
Cfr13I	GGNCC	3 cut(s)	85, 256, 939
ClaI	ATCGAT	1 cut(s)	748
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	4 cut(s)	22, 281, 629, 805
CspCI	CAANNNNNGTGG	2 cut(s)	755, 790
CviAII	CATG	3 cut(s)	89, 194, 533
CviJI	RGCY	7 cut(s)	258, 350, 428, 443, 620, 842, 874
CviKI_1	RGCY	7 cut(s)	258, 350, 428, 443, 620, 842, 874
CviQI	GTAC	4 cut(s)	22, 281, 629, 805
DdeI	CTNAG	6 cut(s)	231, 276, 393, 648, 719, 843
DpnI	GATC	7 cut(s)	225, 566, 708, 751, 908, 971, 978
DpnII	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
Eco105I	TACGTA	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	187, 935
Eco31I	GGTCTC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	85, 939
Eco72I	CACGTG	1 cut(s)	599
Eco81I	CCTNAGG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	939
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	187, 935
ErhI	CCWWGG	2 cut(s)	187, 935
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	3 cut(s)	92, 197, 536
FaqI	GGGAC	2 cut(s)	756, 925
FatI	CATG	3 cut(s)	88, 193, 532
FblI	GTMKAC	1 cut(s)	758
Fnu4HI	GCNGC	2 cut(s)	530, 621
FokI	GGATG	4 cut(s)	65, 221, 528, 599
Fsp4HI	GCNGC	2 cut(s)	530, 621
FspBI	CTAG	3 cut(s)	429, 558, 936
GlaI	GCGC	1 cut(s)	996
GluI	GCNGC	2 cut(s)	530, 621
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	704
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	1 cut(s)	997
Hin1II	CATG	3 cut(s)	92, 197, 536
Hin6I	GCGC	1 cut(s)	995
HinP1I	GCGC	1 cut(s)	995
HincII	GTYRAC	2 cut(s)	363, 715
HindII	GTYRAC	2 cut(s)	363, 715
HinfI	GANTC	3 cut(s)	213, 318, 730
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	2 cut(s)	485, 979
Hpy166II	GTNNAC	5 cut(s)	363, 404, 654, 715, 759
Hpy188I	TCNGA	4 cut(s)	315, 579, 649, 852
Hpy188III	TCNNGA	5 cut(s)	151, 558, 704, 910, 953
Hpy8I	GTNNAC	5 cut(s)	363, 404, 654, 715, 759
HpyAV	CCTTC	5 cut(s)	199, 237, 418, 832, 1013
HpyCH4III	ACNGT	4 cut(s)	8, 271, 658, 763
HpyCH4IV	ACGT	6 cut(s)	77, 283, 598, 795, 807, 832
HpyCH4V	TGCA	5 cut(s)	529, 623, 766, 860, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 608, 617
HpyF3I	CTNAG	6 cut(s)	231, 276, 393, 648, 719, 843
HpySE526I	ACGT	6 cut(s)	77, 283, 598, 795, 807, 832
Hsp92II	CATG	3 cut(s)	92, 197, 536
HspAI	GCGC	1 cut(s)	995
Kpn2I	TCCGGA	1 cut(s)	703
Kzo9I	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	2 cut(s)	541, 607
LweI	GCATC	5 cut(s)	106, 484, 516, 856, 946
MaeI	CTAG	3 cut(s)	429, 558, 936
MaeII	ACGT	6 cut(s)	77, 283, 598, 795, 807, 832
MaeIII	GTNAC	3 cut(s)	271, 922, 950
MalI	GATC	7 cut(s)	225, 566, 708, 751, 908, 971, 978
MboI	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
MboII	GAAGA	2 cut(s)	382, 725
MflI	RGATCY	2 cut(s)	223, 906
MluCI	AATT	4 cut(s)	134, 146, 161, 767
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	76, 169, 271, 319, 388, 577, 672, 728
MroI	TCCGGA	1 cut(s)	703
MslI	CAYNNNNRTG	2 cut(s)	537, 649
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	754
MwoI	GCNNNNNNNGC	3 cut(s)	109, 608, 617
NdeII	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
NlaIII	CATG	3 cut(s)	92, 197, 536
NlaIV	GGNNCC	3 cut(s)	225, 257, 941
NmuCI	GTSAC	2 cut(s)	922, 950
NspV	TTCGAA	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	3 cut(s)	213, 318, 730
PkrI	GCNGC	2 cut(s)	531, 622
Ple19I	CGATCG	1 cut(s)	752
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
Ppu21I	YACGTR	2 cut(s)	284, 599
PpuMI	RGGWCCY	1 cut(s)	939
Psp5II	RGGWCCY	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	291
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	225, 257, 941
PspPI	GGNCC	3 cut(s)	85, 256, 939
PspPPI	RGGWCCY	1 cut(s)	939
PstI	CTGCAG	2 cut(s)	625, 862
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	223, 906
PvuI	CGATCG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	23, 282, 630, 806
RsaNI	GTAC	4 cut(s)	22, 281, 629, 805
RseI	CAYNNNNRTG	2 cut(s)	537, 649
SatI	GCNGC	2 cut(s)	530, 621
Sau3AI	GATC	7 cut(s)	223, 564, 706, 749, 906, 969, 976
Sau96I	GGNCC	3 cut(s)	85, 256, 939
SbfI	CCTGCAGG	1 cut(s)	862
ScrFI	CCNGG	1 cut(s)	293
SdaI	CCTGCAGG	1 cut(s)	862
SfaNI	GCATC	5 cut(s)	106, 484, 516, 856, 946
SfcI	CTRYAG	4 cut(s)	267, 487, 621, 858
SfuI	TTCGAA	1 cut(s)	203
SinI	GGWCC	2 cut(s)	85, 939
SmiMI	CAYNNNNRTG	2 cut(s)	537, 649
SnaBI	TACGTA	1 cut(s)	284
Sse8387I	CCTGCAGG	1 cut(s)	862
Sse9I	AATT	4 cut(s)	134, 146, 161, 767
SsiI	CCGC	4 cut(s)	103, 468, 537, 754
SspMI	CTAG	3 cut(s)	429, 558, 936
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	2 cut(s)	187, 935
TaaI	ACNGT	4 cut(s)	8, 271, 658, 763
TaiI	ACGT	6 cut(s)	80, 286, 601, 798, 810, 835
TaqI	TCGA	4 cut(s)	150, 203, 748, 911
TasI	AATT	4 cut(s)	134, 146, 161, 767
TfiI	GAWTC	3 cut(s)	213, 318, 730
TscAI	CASTG	3 cut(s)	249, 931, 966
TseFI	GTSAC	2 cut(s)	922, 950
TseI	GCWGC	2 cut(s)	529, 620
Tsp45I	GTSAC	2 cut(s)	922, 950
TspDTI	ATGAA	4 cut(s)	17, 263, 310, 800
TspGWI	ACGGA	2 cut(s)	9, 996
TspRI	CASTG	3 cut(s)	249, 931, 966
VpaK11BI	GGWCC	2 cut(s)	85, 939
XapI	RAATTY	2 cut(s)	146, 161
XbaI	TCTAGA	1 cut(s)	557
XmaJI	CCTAGG	1 cut(s)	935
XmiI	GTMKAC	1 cut(s)	758
XspI	CTAG	3 cut(s)	429, 558, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.