FvH4_4g10032

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
12553142 .. 12554401
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10032.t1

Sequence Viewer

Length: 1197 bp
ATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGAATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGGTTTGTCAGCAAGTAAAAGCTGAAAGGCAGAAGCCTTCTGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTCGTTTTCAGTTTACCTCGTACCCGTAAAGGGCATGACGGTATTTGGGTGATTGTGGATCGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTTTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACAATTCTGACGTTGGAGGATATGTTGAGGGCTTGTGTCTTGCAGTTCAGAGGAAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATATCTTTCATTCTAGCATTGTGGGGGAAAAAGAGCTCTGTGGCCCAGAATTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACCGCTCAAAGTAGGCAGAAGAGTTATGCAGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGGTTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGTCTGAGGTATATTGGCCCTTATGTGATCATAGAGCGAGTTGGCTCACTTGCTTATCGGCTACTTTTGCCTCCAGAGTTAGCTAGGATACATAATGTGTTTCATGTATCCATGCTTTGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACATATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAATAAGACAATCTCACTTGTCAAGGTGCTTTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGCAGCAAATGATGCAGCAGTATCCCTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

399

Amino Acids

46.37

Weight (kDa)

9.33

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 1 - 50 6.2e-18 Integrase zinc binding domain
SH3_Tf2-1 PF24626 261 - 325 2.7e-24 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AccBSI CCGCTC 1 cut(s) 722
AciI CCGC 2 cut(s) 347, 720
AclWI GGATC 4 cut(s) 291, 407, 420, 977
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 3 cut(s) 431, 602, 770
AcuI CTGAAG 2 cut(s) 431, 460
AfaI GTAC 2 cut(s) 247, 463
AfiI CCNNNNNNNGG 2 cut(s) 255, 815
AgeI ACCGGT 1 cut(s) 1048
AgsI TTSAA 3 cut(s) 67, 770, 776
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
Alw21I GWGCWC 2 cut(s) 445, 654
AlwI GGATC 4 cut(s) 291, 407, 420, 977
AoxI GGCC 3 cut(s) 83, 658, 865
ApeKI GCWGC 7 cut(s) 29, 107, 452, 997, 1006, 1159, 1171
ApoI RAATTY 3 cut(s) 431, 602, 770
ArsI GACNNNNNNTTYG 2 cut(s) 1012, 1044
AseI ATTAAT 1 cut(s) 668
AsiGI ACCGGT 1 cut(s) 1048
Asp700I GAANNNNTTC 1 cut(s) 1050
Asp718I GGTACC 1 cut(s) 461
AspS9I GGNCC 3 cut(s) 208, 659, 866
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 4 cut(s) 208, 283, 286, 794
AvaII GGWCC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 85
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 2 cut(s) 445, 654
Bbv12I GWGCWC 2 cut(s) 445, 654
BbvI GCAGC 7 cut(s) 16, 119, 464, 984, 1018, 1171, 1183
BccI CCATC 2 cut(s) 497, 592
BceAI ACGGC 1 cut(s) 166
BciVI GTATCC 3 cut(s) 930, 967, 1188
BclI TGATCA 1 cut(s) 876
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 2 cut(s) 630, 933
BfuI GTATCC 3 cut(s) 930, 967, 1188
BglII AGATCT 1 cut(s) 763
BisI GCNGC 7 cut(s) 30, 108, 453, 998, 1007, 1160, 1172
BlsI GCNGC 7 cut(s) 31, 109, 454, 999, 1008, 1161, 1173
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 3 cut(s) 208, 659, 866
BmiI GGNNCC 4 cut(s) 209, 414, 463, 1047
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 1158
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpmI CTGGAG 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 1082
BpuEI CTTGAG 2 cut(s) 197, 698
BpuMI CCSGG 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 219, 809
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 815
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 2 cut(s) 194, 314
Bse8I GATNNNNATC 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 219, 809
BseGI GGATG 2 cut(s) 34, 490
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 255, 815
BseMII CTCAG 2 cut(s) 509, 845
BseNI ACTGG 2 cut(s) 194, 314
BseXI GCAGC 7 cut(s) 16, 119, 464, 984, 1018, 1171, 1183
BsgI GTGCAG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 1066
BshFI GGCC 3 cut(s) 85, 660, 867
BshNI GGYRCC 1 cut(s) 461
BshTI ACCGGT 1 cut(s) 1048
BsiEI CGRYCG 1 cut(s) 1066
BsiHKAI GWGCWC 2 cut(s) 445, 654
BsiSI CCGG 2 cut(s) 38, 1049
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 255, 815
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 3 cut(s) 85, 660, 867
Bsp1286I GDGCHC 2 cut(s) 445, 654
Bsp143I GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 2 cut(s) 347, 720
BspANI GGCC 3 cut(s) 85, 660, 867
BspCNI CTCAG 2 cut(s) 508, 846
BspLI GGNNCC 4 cut(s) 209, 414, 463, 1047
BspPI GGATC 4 cut(s) 291, 407, 420, 977
BspQI GCTCTTC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 1048
BsrI ACTGG 2 cut(s) 194, 314
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 2 cut(s) 219, 809
BssMI GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
BssT1I CCWWGG 2 cut(s) 219, 809
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 6 cut(s) 89, 450, 479, 731, 1035, 1193
BstAPI GCANNNNNTGC 2 cut(s) 29, 1168
BstDEI CTNAG 4 cut(s) 495, 848, 854, 1082
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 813
BstF5I GGATG 2 cut(s) 34, 490
BstKTI GATC 7 cut(s) 286, 409, 415, 766, 879, 985, 1014
BstMBI GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
BstMCI CGRYCG 1 cut(s) 1066
BstMWI GCNNNNNNNGC 7 cut(s) 29, 449, 844, 916, 1003, 1006, 1168
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 7 cut(s) 16, 119, 464, 984, 1018, 1171, 1183
BstX2I RGATCY 2 cut(s) 412, 763
BstYI RGATCY 2 cut(s) 412, 763
BsuI GTATCC 3 cut(s) 930, 967, 1188
BsuRI GGCC 3 cut(s) 85, 660, 867
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 34, 490
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 3 cut(s) 201, 321, 480
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 3 cut(s) 208, 659, 866
Csp6I GTAC 2 cut(s) 246, 462
CspAI ACCGGT 1 cut(s) 1048
CviAII CATG 8 cut(s) 91, 220, 260, 380, 674, 953, 961, 992
CviQI GTAC 2 cut(s) 246, 462
DdeI CTNAG 4 cut(s) 495, 848, 854, 1082
DpnI GATC 7 cut(s) 285, 408, 414, 765, 878, 984, 1013
DpnII GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 6 cut(s) 89, 450, 479, 731, 1035, 1193
EarI CTCTTC 6 cut(s) 89, 450, 479, 731, 1035, 1193
EciI GGCGGA 1 cut(s) 362
Ecl136II GAGCTC 2 cut(s) 443, 652
Eco130I CCWWGG 2 cut(s) 219, 809
Eco24I GRGCYC 2 cut(s) 445, 654
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 2 cut(s) 443, 652
Eco57I CTGAAG 2 cut(s) 431, 460
EcoICRI GAGCTC 2 cut(s) 443, 652
EcoNI CCTNNNNNAGG 1 cut(s) 813
EcoT14I CCWWGG 2 cut(s) 219, 809
EcoT38I GRGCYC 2 cut(s) 445, 654
ErhI CCWWGG 2 cut(s) 219, 809
FaeI CATG 8 cut(s) 94, 223, 263, 383, 677, 956, 964, 995
FaqI GGGAC 1 cut(s) 221
FatI CATG 8 cut(s) 90, 219, 259, 379, 673, 952, 960, 991
FauNDI CATATG 2 cut(s) 25, 1036
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 7 cut(s) 30, 108, 453, 998, 1007, 1160, 1172
FokI GGATG 2 cut(s) 21, 477
FriOI GRGCYC 2 cut(s) 445, 654
Fsp4HI GCNGC 7 cut(s) 30, 108, 453, 998, 1007, 1160, 1172
FspBI CTAG 2 cut(s) 630, 933
GluI GCNGC 7 cut(s) 30, 108, 453, 998, 1007, 1160, 1172
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 3 cut(s) 85, 660, 867
HapII CCGG 2 cut(s) 38, 1049
Hin1II CATG 8 cut(s) 94, 223, 263, 383, 677, 956, 964, 995
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 5 cut(s) 288, 392, 711, 1057, 1151
HpaII CCGG 2 cut(s) 38, 1049
HphI GGTGA 4 cut(s) 208, 283, 286, 794
Hpy166II GTNNAC 1 cut(s) 239
Hpy188III TCNNGA 8 cut(s) 168, 389, 410, 715, 767, 796, 923, 1061
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 174, 996
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 8 cut(s) 23, 107, 302, 562, 746, 969, 1000, 1171
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 449, 844, 916, 1003, 1006, 1168
HpyF3I CTNAG 4 cut(s) 495, 848, 854, 1082
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 8 cut(s) 94, 223, 263, 383, 677, 956, 964, 995
KpnI GGTACC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 876
Kzo9I GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 3 cut(s) 349, 440, 1072
Lsp1109I GCAGC 7 cut(s) 16, 119, 464, 984, 1018, 1171, 1183
LweI GCATC 1 cut(s) 1158
MaeI CTAG 2 cut(s) 630, 933
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 1 cut(s) 676
MalI GATC 7 cut(s) 285, 408, 414, 765, 878, 984, 1013
MbiI CCGCTC 1 cut(s) 722
MboI GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
MboII GAAGA 9 cut(s) 79, 106, 437, 466, 700, 748, 1052, 1148, 1180
MflI RGATCY 2 cut(s) 412, 763
MhlI GDGCHC 2 cut(s) 445, 654
MlsI TGGCCA 1 cut(s) 85
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 2 cut(s) 282, 705
MmeI TCCRAC 1 cut(s) 513
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 1050
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 668, 693
MslI CAYNNNNRTG 2 cut(s) 50, 218
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 2 cut(s) 38, 1049
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 7 cut(s) 29, 449, 844, 916, 1003, 1006, 1168
NciI CCSGG 1 cut(s) 39
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 2 cut(s) 25, 1036
NdeII GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
NlaIII CATG 8 cut(s) 94, 223, 263, 383, 677, 956, 964, 995
NlaIV GGNNCC 4 cut(s) 209, 414, 463, 1047
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 3 cut(s) 392, 1057, 1151
PinAI ACCGGT 1 cut(s) 1048
PkrI GCNGC 7 cut(s) 31, 109, 454, 999, 1008, 1161, 1173
PleI GAGTC 2 cut(s) 282, 705
PpsI GAGTC 2 cut(s) 282, 705
PshBI ATTAAT 1 cut(s) 668
Psp124BI GAGCTC 2 cut(s) 445, 654
PspN4I GGNNCC 4 cut(s) 209, 414, 463, 1047
PspPI GGNCC 3 cut(s) 208, 659, 866
PsuI RGATCY 2 cut(s) 412, 763
RsaI GTAC 2 cut(s) 247, 463
RsaNI GTAC 2 cut(s) 246, 462
RseI CAYNNNNRTG 2 cut(s) 50, 218
SacI GAGCTC 2 cut(s) 445, 654
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 668, 693
SatI GCNGC 7 cut(s) 30, 108, 453, 998, 1007, 1160, 1172
Sau3AI GATC 7 cut(s) 283, 406, 412, 763, 876, 982, 1011
Sau96I GGNCC 3 cut(s) 208, 659, 866
SchI GAGTC 2 cut(s) 282, 705
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 2 cut(s) 445, 654
SfaNI GCATC 1 cut(s) 1158
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 50, 218
SmlI CTYRAG 2 cut(s) 176, 713
SmoI CTYRAG 2 cut(s) 176, 713
SsiI CCGC 2 cut(s) 347, 720
SspMI CTAG 2 cut(s) 630, 933
SstI GAGCTC 2 cut(s) 445, 654
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 2 cut(s) 219, 809
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 286, 418, 1062
TaqII GACCGA 1 cut(s) 1080
TfiI GAWTC 3 cut(s) 392, 1057, 1151
Tru1I TTAA 2 cut(s) 668, 693
Tru9I TTAA 2 cut(s) 668, 693
TscAI CASTG 3 cut(s) 201, 321, 487
TseI GCWGC 7 cut(s) 29, 107, 452, 997, 1006, 1159, 1171
TspDTI ATGAA 7 cut(s) 107, 368, 378, 479, 614, 941, 1053
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 3 cut(s) 201, 321, 487
VpaK11BI GGWCC 1 cut(s) 208
VspI ATTAAT 1 cut(s) 668
XagI CCTNNNNNAGG 1 cut(s) 813
XapI RAATTY 3 cut(s) 431, 602, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 1050
XspI CTAG 2 cut(s) 630, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.