FvH4_4g15585

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
19342280 .. 19343968
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15585.t1

Sequence Viewer

Length: 1689 bp
ATGCCTCCTGGCCGAGCTCCTAGGCAGAATCATCCAGGGGGTGATGATGAGGAAGCACAGAGTGGTTTTATGAATGCCATGGAGGATTTCTTTCAGCGTTTTAGCACTAGCATGGTCCTTGAGATAAATTATGATAGAGCTTACAAGAATGGTGCTAGAGCGTTTAGCCATGCTGTTGAGCCATTGGATGCTCAGAATTGGGTAGAGACCATTGAGAAGATGTTTATTCAGGTGAGGTGCCCAGAGGATAGGAAAGTGGGCTTGGCTACTCAGTTTTTGGAGAAGGAAGCTTGGCATTGGTGGCTTGATATGAGTAGAGGTATGGGTGAAGCTGCAAATCATATGTCTTGGGATCAGTTTACAGCTCTTTTTAGAGAGCGCTATATTAGTCATGCTCATGTCAACCGAATGAGGGAGGAGTTCTTGAATCTGCAAAAGGGTGATGACATGACAGTGATGGGTTTTGAGCAGCGATTCCGGGAGTTGTCCTATTATGTGCCGGATTTGGTGAAGACAGAGCAGGAGAAGATTTATCAGTTCACCAAGGGTCTTGGTGGTATTTATGCAAACAGGATGACAGCGGTGCCATATCAGTCATTTCACCAGGCTGTGACTTTTGCTCTGAATATTGAGGCCCAGGAGTTGGCAGCTAGCCGTCTTCGTGATTCTGGTGGTCATAGCCAGGGTTCATCAAGGAAATTGGCGTCCACCTCGGGTTCTGGATCATCTTCTGGTAGTGGACATGGTAGCAGTTCAAGTCCTGGTAGTAGACCCTTCAAGAATTTTATTGGGCGTCAGCTTGGGCGATTCAGGAGTGGATCGAGCAGTAGGAGTGGGACCTCAGGTGGTCAGTCTTTTCAGTCTGGACAGAGTCAGTTTCAGTCAGGGGGATGTTTTCAGTGTGGTCAGCTGGATCACTTCAAGAGGGATTGCCCTCTTCTGACTCAGGGAGCTACATATGCTCCTACTCAGGCCATGGGTCAGGCATCAGCTGGTGGTTCTAGTAGTGGCACTCGCGCCATGGCTCCAGCCAGAGGCGGCTTCCAGCCGGGCAGAGGACAGAGAGGTCGTCCTGCCACTACTCATGCTAGGCTTCATGCCATGACTCAGCAGGAGGGACGTACCTCCCCAGATGTTATCATTGGTACGTTGTTAATTTTCGGTCATCCTGCTTTTATATTGATAGACCCTGGAGCGACGCATTCCTTTATGTCTAGTAGATTTTCATTTCTCGCCAATGTGCCATCTTCGCCACTTCTAGGCGAGTGGCAGGTTTCCTTGCCTTCCGGTGATGTGATGAAGATAGATTGGGTATTTAAAGGTTGTGAGGTGTTGGTAGAGGGTCTTAGTTTCGAGGTTGACTTGATTCCATTAGATATTGTGGAGTTTGATGTAATCTTGGGTATGGACTTTTTAGAGGCGCATAGAGCCATGATTGATTGTTTCCGGAAAGTAGTAGTGTTGAGAAGTCCTGGGAAGCCTGAGGTTACATTTCAAGGTGAGCGAGATGTTATCTCAAGTTGTTTGATTTCGGCGGTTGCTGCTAGGAAATTGTTGAATAAAGGGTGTCAAGCTTATTTAGCTCATGTGGTGGATACTAGAAAGGGAGAGGTGAGAATGGAAGATATCCCTATAGTTAATGAGTTCCCTGATGTTTTTCCAGATGAGTTGCCTGGTTGCCTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

563

Amino Acids

62.0

Weight (kDa)

6.48

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 59 - 211 8.5e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 88 - 184 1.3e-15 Retrotransposon gag protein
RVP_2 PF08284 361 - 489 6.4e-32 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1065
Acc36I ACCTGC 1 cut(s) 1261
AccB1I GGYRCC 2 cut(s) 237, 583
AccB7I CCANNNNNTGG 1 cut(s) 643
AccI GTMKAC 1 cut(s) 769
AccII CGCG 1 cut(s) 1017
AccIII TCCGGA 1 cut(s) 1446
AciI CCGC 3 cut(s) 581, 1038, 1535
AclWI GGATC 4 cut(s) 360, 730, 826, 921
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 1 cut(s) 781
AcyI GRCGYC 2 cut(s) 704, 793
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 2 cut(s) 1123, 1147
AfeI AGCGCT 1 cut(s) 380
AfiI CCNNNNNNNGG 5 cut(s) 412, 643, 1034, 1055, 1259
AgsI TTSAA 6 cut(s) 427, 756, 778, 922, 1496, 1558
AjnI CCWGG 9 cut(s) 7, 34, 603, 636, 681, 760, 1189, 1471, 1672
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 4 cut(s) 360, 730, 826, 921
Ama87I CYCGRG 1 cut(s) 712
Aor13HI TCCGGA 1 cut(s) 1446
Aor51HI AGCGCT 1 cut(s) 380
AoxI GGCC 3 cut(s) 10, 633, 972
ApeKI GCWGC 4 cut(s) 332, 469, 647, 1541
ApoI RAATTY 1 cut(s) 781
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspA2I CCTAGG 1 cut(s) 20
AspLEI GCGC 3 cut(s) 381, 1019, 1423
AspS9I GGNCC 3 cut(s) 115, 634, 837
AsuC2I CCSGG 2 cut(s) 479, 1050
AsuNHI GCTAGC 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 2 cut(s) 115, 837
AvrII CCTAGG 1 cut(s) 20
AxyI CCTNAGG 2 cut(s) 841, 1482
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 2 cut(s) 237, 583
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 2 cut(s) 518, 650
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 4 cut(s) 319, 481, 659, 1528
BccI CCATC 2 cut(s) 451, 1252
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 9 cut(s) 9, 36, 605, 638, 683, 762, 1191, 1473, 1674
BciVI GTATCC 1 cut(s) 1588
BcnI CCSGG 2 cut(s) 479, 1050
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 1632
BfoI RGCGCY 1 cut(s) 382
BfuAI ACCTGC 1 cut(s) 1261
BfuI GTATCC 1 cut(s) 1588
BisI GCNGC 5 cut(s) 333, 470, 648, 1039, 1542
BlnI CCTAGG 1 cut(s) 20
BlsI GCNGC 5 cut(s) 334, 471, 649, 1040, 1543
Bme18I GGWCC 2 cut(s) 115, 837
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 3 cut(s) 115, 634, 837
BmiI GGNNCC 4 cut(s) 239, 585, 838, 1026
BmsI GCATC 2 cut(s) 178, 995
BmtI GCTAGC 1 cut(s) 654
BpiI GAAGAC 2 cut(s) 518, 650
BpmI CTGGAG 2 cut(s) 1011, 1212
BpuEI CTTGAG 2 cut(s) 140, 1501
BpuMI CCSGG 2 cut(s) 479, 1050
BsaHI GRCGYC 2 cut(s) 704, 793
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 2 cut(s) 1286, 1446
BsaXI ACNNNNNCTCC 2 cut(s) 946, 976
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 643, 1034, 1055, 1259
Bse21I CCTNAGG 2 cut(s) 841, 1482
BseAI TCCGGA 1 cut(s) 1446
BseBI CCWGG 9 cut(s) 9, 36, 605, 638, 683, 762, 1191, 1473, 1674
BseGI GGATG 5 cut(s) 31, 193, 579, 896, 1165
BseLI CCNNNNNNNGG 5 cut(s) 412, 643, 1034, 1055, 1259
BseMII CTCAG 7 cut(s) 206, 284, 855, 959, 983, 1121, 1473
BseRI GAGGAG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 4 cut(s) 319, 481, 659, 1528
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 3 cut(s) 12, 635, 974
BshNI GGYRCC 2 cut(s) 237, 583
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 5 cut(s) 478, 500, 1049, 1287, 1447
BslFI GGGAC 2 cut(s) 850, 1131
BslI CCNNNNNNNGG 5 cut(s) 412, 643, 1034, 1055, 1259
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 2 cut(s) 850, 1131
BsmI GAATGC 2 cut(s) 79, 1201
BsnI GGCC 3 cut(s) 12, 635, 974
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 19, 242
Bsp13I TCCGGA 1 cut(s) 1446
Bsp143I GATC 4 cut(s) 352, 722, 818, 913
Bsp19I CCATGG 3 cut(s) 78, 975, 1020
BspACI CCGC 3 cut(s) 581, 1038, 1535
BspANI GGCC 3 cut(s) 12, 635, 974
BspCNI CTCAG 7 cut(s) 205, 283, 854, 958, 982, 1120, 1474
BspEI TCCGGA 1 cut(s) 1446
BspFNI CGCG 1 cut(s) 1017
BspLI GGNNCC 4 cut(s) 239, 585, 838, 1026
BspMI ACCTGC 1 cut(s) 1261
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 4 cut(s) 360, 730, 826, 921
BspT107I GGYRCC 2 cut(s) 237, 583
BspTNI GGTCTC 1 cut(s) 200
BssMI GATC 4 cut(s) 352, 722, 818, 913
BssNI GRCGYC 2 cut(s) 704, 793
BssT1I CCWWGG 5 cut(s) 20, 78, 543, 975, 1020
Bst2UI CCWGG 9 cut(s) 9, 36, 605, 638, 683, 762, 1191, 1473, 1674
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 1 cut(s) 942
BstACI GRCGYC 2 cut(s) 704, 793
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 8 cut(s) 192, 270, 841, 945, 969, 1107, 1346, 1482
BstDSI CCRYGG 3 cut(s) 78, 975, 1020
BstF5I GGATG 5 cut(s) 31, 193, 579, 896, 1165
BstFNI CGCG 1 cut(s) 1017
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 3 cut(s) 381, 1019, 1423
BstKTI GATC 4 cut(s) 355, 725, 821, 916
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 4 cut(s) 352, 722, 818, 913
BstMWI GCNNNNNNNGC 6 cut(s) 301, 959, 1249, 1427, 1541, 1580
BstNI CCWGG 9 cut(s) 9, 36, 605, 638, 683, 762, 1191, 1473, 1674
BstSFI CTRYAG 1 cut(s) 1632
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 4 cut(s) 319, 481, 659, 1528
BstV2I GAAGAC 2 cut(s) 518, 650
Bsu36I CCTNAGG 2 cut(s) 841, 1482
BsuI GTATCC 1 cut(s) 1588
BsuRI GGCC 3 cut(s) 12, 635, 974
BtgI CCRYGG 3 cut(s) 78, 975, 1020
BtsCI GGATG 5 cut(s) 31, 193, 579, 896, 1165
BtsIMutI CAGTG 2 cut(s) 459, 905
BveI ACCTGC 1 cut(s) 1261
Cac8I GCNNGC 1 cut(s) 652
CfoI GCGC 3 cut(s) 381, 1019, 1423
Cfr13I GGNCC 3 cut(s) 115, 634, 837
CseI GACGC 3 cut(s) 693, 782, 1207
Csp6I GTAC 2 cut(s) 1122, 1146
CviQI GTAC 2 cut(s) 1122, 1146
DdeI CTNAG 8 cut(s) 192, 270, 841, 945, 969, 1107, 1346, 1482
DpnI GATC 4 cut(s) 354, 724, 820, 915
DpnII GATC 4 cut(s) 352, 722, 818, 913
DraI TTTAAA 1 cut(s) 1318
DraIII CACNNNGTG 1 cut(s) 62
DrdI GACNNNNNNGTC 1 cut(s) 1065
DseDI GACNNNNNNGTC 1 cut(s) 1065
EaeI YGGCCR 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 5 cut(s) 20, 78, 543, 975, 1020
Eco24I GRGCYC 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 1627
Eco47I GGWCC 2 cut(s) 115, 837
Eco47III AGCGCT 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 17
Eco81I CCTNAGG 2 cut(s) 841, 1482
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 837
EcoRII CCWGG 9 cut(s) 7, 34, 603, 636, 681, 760, 1189, 1471, 1672
EcoRV GATATC 1 cut(s) 1627
EcoT14I CCWWGG 5 cut(s) 20, 78, 543, 975, 1020
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 5 cut(s) 20, 78, 543, 975, 1020
FaqI GGGAC 2 cut(s) 850, 1131
FauNDI CATATG 2 cut(s) 342, 958
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 5 cut(s) 333, 470, 648, 1039, 1542
FokI GGATG 5 cut(s) 18, 200, 586, 903, 1152
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 5 cut(s) 333, 470, 648, 1039, 1542
GlaI GCGC 3 cut(s) 380, 1018, 1422
GluI GCNGC 5 cut(s) 333, 470, 648, 1039, 1542
GsuI CTGGAG 2 cut(s) 1011, 1212
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 3 cut(s) 12, 635, 974
HapII CCGG 5 cut(s) 478, 500, 1049, 1287, 1447
HgaI GACGC 3 cut(s) 693, 782, 1207
HhaI GCGC 3 cut(s) 381, 1019, 1423
Hin1I GRCGYC 2 cut(s) 704, 793
Hin6I GCGC 3 cut(s) 379, 1017, 1421
HinP1I GCGC 3 cut(s) 379, 1017, 1421
HincII GTYRAC 2 cut(s) 403, 1360
HindII GTYRAC 2 cut(s) 403, 1360
HindIII AAGCTT 2 cut(s) 288, 1572
HinfI GANTC 9 cut(s) 28, 427, 474, 665, 807, 871, 943, 1105, 1366
HpaII CCGG 5 cut(s) 478, 500, 1049, 1287, 1447
Hpy166II GTNNAC 7 cut(s) 360, 403, 540, 708, 740, 770, 1360
Hpy188I TCNGA 3 cut(s) 195, 624, 942
Hpy188III TCNNGA 9 cut(s) 424, 662, 720, 778, 811, 864, 922, 1447, 1661
Hpy8I GTNNAC 7 cut(s) 360, 403, 540, 708, 740, 770, 1360
Hpy99I CGWCG 1 cut(s) 1201
HpyAV CCTTC 3 cut(s) 277, 784, 1293
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 2 cut(s) 1120, 1148
HpyCH4V TGCA 3 cut(s) 335, 433, 566
HpyF10VI GCNNNNNNNGC 6 cut(s) 301, 959, 1249, 1427, 1541, 1580
HpyF3I CTNAG 8 cut(s) 192, 270, 841, 945, 969, 1107, 1346, 1482
HpySE526I ACGT 2 cut(s) 1120, 1148
Hsp92I GRCGYC 2 cut(s) 704, 793
HspAI GCGC 3 cut(s) 379, 1017, 1421
Kpn2I TCCGGA 1 cut(s) 1446
Kzo9I GATC 4 cut(s) 352, 722, 818, 913
LmnI GCTCC 5 cut(s) 22, 950, 967, 1030, 1193
Lsp1109I GCAGC 4 cut(s) 319, 481, 659, 1528
LweI GCATC 2 cut(s) 178, 995
MaeII ACGT 2 cut(s) 1120, 1148
MaeIII GTNAC 2 cut(s) 610, 1486
MalI GATC 4 cut(s) 354, 724, 820, 915
MboI GATC 4 cut(s) 352, 722, 818, 913
MboII GAAGA 9 cut(s) 229, 523, 538, 650, 720, 929, 1239, 1312, 1634
MhlI GDGCHC 2 cut(s) 19, 242
MluCI AATT 6 cut(s) 127, 196, 698, 781, 1155, 1550
MlyI GAGTC 3 cut(s) 880, 937, 1099
MroI TCCGGA 1 cut(s) 1446
MseI TTAA 3 cut(s) 1154, 1317, 1638
MslI CAYNNNNRTG 3 cut(s) 110, 396, 452
MspA1I CMGCKG 3 cut(s) 581, 910, 992
MspI CCGG 5 cut(s) 478, 500, 1049, 1287, 1447
Mva1269I GAATGC 2 cut(s) 79, 1201
MvaI CCWGG 9 cut(s) 9, 36, 605, 638, 683, 762, 1191, 1473, 1674
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 6 cut(s) 301, 959, 1249, 1427, 1541, 1580
NciI CCSGG 2 cut(s) 479, 1050
NcoI CCATGG 3 cut(s) 78, 975, 1020
NdeI CATATG 2 cut(s) 342, 958
NdeII GATC 4 cut(s) 352, 722, 818, 913
NheI GCTAGC 1 cut(s) 650
NlaIV GGNNCC 4 cut(s) 239, 585, 838, 1026
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 610
PctI GAATGC 2 cut(s) 79, 1201
PfeI GAWTC 6 cut(s) 28, 427, 474, 665, 807, 1366
PflFI GACNNNGTC 1 cut(s) 870
PflMI CCANNNNNTGG 1 cut(s) 643
PfoI TCCNGGA 1 cut(s) 477
PkrI GCNGC 5 cut(s) 334, 471, 649, 1040, 1543
PleI GAGTC 3 cut(s) 879, 937, 1099
PpsI GAGTC 3 cut(s) 879, 937, 1099
PpuMI RGGWCCY 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 837
Psp6I CCWGG 9 cut(s) 7, 34, 603, 636, 681, 760, 1189, 1471, 1672
PspGI CCWGG 9 cut(s) 7, 34, 603, 636, 681, 760, 1189, 1471, 1672
PspN4I GGNNCC 4 cut(s) 239, 585, 838, 1026
PspPI GGNCC 3 cut(s) 115, 634, 837
PspPPI RGGWCCY 1 cut(s) 837
PsyI GACNNNGTC 1 cut(s) 870
PvuII CAGCTG 2 cut(s) 910, 992
RsaI GTAC 2 cut(s) 1123, 1147
RsaNI GTAC 2 cut(s) 1122, 1146
RseI CAYNNNNRTG 3 cut(s) 110, 396, 452
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 1154, 1317, 1638
SatI GCNGC 5 cut(s) 333, 470, 648, 1039, 1542
Sau3AI GATC 4 cut(s) 352, 722, 818, 913
Sau96I GGNCC 3 cut(s) 115, 634, 837
SchI GAGTC 3 cut(s) 880, 937, 1099
SduI GDGCHC 2 cut(s) 19, 242
SfaNI GCATC 2 cut(s) 178, 995
SfcI CTRYAG 1 cut(s) 1632
SinI GGWCC 2 cut(s) 115, 837
SmiMI CAYNNNNRTG 3 cut(s) 110, 396, 452
SmlI CTYRAG 2 cut(s) 119, 1516
SmoI CTYRAG 2 cut(s) 119, 1516
Sse9I AATT 6 cut(s) 127, 196, 698, 781, 1155, 1550
SsiI CCGC 3 cut(s) 581, 1038, 1535
SspI AATATT 1 cut(s) 628
SstI GAGCTC 1 cut(s) 19
StyI CCWWGG 5 cut(s) 20, 78, 543, 975, 1020
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 2 cut(s) 1123, 1151
TaqI TCGA 2 cut(s) 821, 1353
TaqII GACCGA 1 cut(s) 1151
TasI AATT 6 cut(s) 127, 196, 698, 781, 1155, 1550
TauI GCSGC 1 cut(s) 1041
TfiI GAWTC 6 cut(s) 28, 427, 474, 665, 807, 1366
Tru1I TTAA 3 cut(s) 1154, 1317, 1638
Tru9I TTAA 3 cut(s) 1154, 1317, 1638
TscAI CASTG 2 cut(s) 459, 905
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 4 cut(s) 332, 469, 647, 1541
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 5 cut(s) 86, 678, 1085, 1215, 1313
TspRI CASTG 2 cut(s) 459, 905
Tth111I GACNNNGTC 1 cut(s) 870
Van91I CCANNNNNTGG 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 115, 837
XapI RAATTY 1 cut(s) 781
XmaJI CCTAGG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.