RchiOBHm_Chr7g0237821

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000094
Physical Location & Seq
Reverse (-)
62978520 .. 62983394
4875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21314

Sequence Viewer

Length: 1242 bp
ATGCCTCCTAGACGCCGAAGACGTGAGGAAACCCCTCCTGTTGATGATGGGGGAGATACACCGCAGAATCTTGCAGATGCGTTTGGACAGTTCTTTCAGCAGTTTGCTGCCGTACTCCCCGGTTCACGCACTGACTATACTGTGGAGCGTGCTAAGAGAAACGGGGCTCAGACTTTTGCTTCCGCCACATCACCTGTAGAGGCTCAGCGGTGGCTTGATAGGATGGAGAGAGTGTTCTCCCAGATGGAGCTCCCAGAGGACAGGAAGGTTAATTTGGCGGTGCAGTTCCTGGAGGATACCGCCTGGCATTGGTGGACTGGTGTTGTCAATGACCCTGCAAATGCTGGCCCGATGACGTGGGATATGTTCAAGGCCCATTTCTGTGGACGGTACTTTAGTGATGCCCACCTTAATCGGATGCAAGACCAGTTCTTGAGCTTGGTGAAGAGGGATGAGCAGTCAGTGTTGGAGTTTGAGCAGGAGTTTCTCTCTTTGGCCCATCATGTGCCGGATTTGGTTCGTACTGAGCAAAGTAAGATTCGTAGATTTGTCTTGGGACTTGGAGGAAAGTTTAAGGATAAGATGTTAGGCACACCGTACCGTAGCTTTGCTGAGGCGATATCTTATGCCATGGACATTGAGTCAGACTCACCTGCTGGATTTCACCCTAGGGATTCTGGCGGCCCTAGCCAGGGTCCATCTAAGAGGGCTGCTTCCACTTCTGGTTCAGGATCTTCTGGAGGTAGTAGATTTGTCAGTTCAGACTCGACCACCTTACCGGATTTTGGAGGACTTAATGTGGGAGGTGGACAGTCTGACTGGCAGTTCAGTGTCAGCACAGGTCAGTACGGTGGTACCTCAGAGGGATTCCATACTTGGAGGGATCGTTCCCAGCATCAAACGAGAGATGTGACGTGCTATCAGTGCGGACAGCAGGGTCATTATAGAAGGGATTGCCCTACATTGACTCAGGACGCTACTCCAAACGTCGGTCAAGGTTCTAGTCATGCATCAGGAGGGTTATCTAGCGGCACTCACACTAATTCAACCAAGGGCGACACTTCCACCAGTTCTGCCAGGGGCGGCACTCAACGGAGTAGTGGTCGTCGTGGACGTCCAGCGACACAAACAAGACTTCATGCCATGGTTCAGCGAGAGGATCACGTTCCTCTAGGTACTACCGACGGACGTGATACCGACCTATCGCTCGACGAGGATCCTTACGCTTGGATACCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04011 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
HJURP_C SRF-TF

Protein Analysis

413

Amino Acids

45.6

Weight (kDa)

6.36

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 57 - 214 6.1e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 92 - 187 3e-17 Retrotransposon gag protein
zf-CCHC PF00098 305 - 320 2.9e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 661
AasI GACNNNNNNGTC 1 cut(s) 936
AatII GACGTC 1 cut(s) 1117
Acc36I ACCTGC 1 cut(s) 661
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 854
AciI CCGC 9 cut(s) 62, 183, 208, 278, 300, 681, 927, 1029, 1083
AclWI GGATC 5 cut(s) 739, 891, 1167, 1211, 1224
AcyI GRCGYC 2 cut(s) 13, 1114
AfaI GTAC 7 cut(s) 114, 392, 523, 599, 848, 856, 1177
AfiI CCNNNNNNNGG 5 cut(s) 309, 691, 692, 785, 989
AgsI TTSAA 2 cut(s) 370, 1047
AhdI GACNNNNNGTC 1 cut(s) 640
AjiI CACGTC 4 cut(s) 23, 357, 915, 1190
AjnI CCWGG 4 cut(s) 288, 302, 690, 1076
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AloI GAACNNNNNNTCC 4 cut(s) 218, 250, 871, 903
AluBI AGCT 3 cut(s) 250, 438, 606
AluI AGCT 3 cut(s) 250, 438, 606
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 5 cut(s) 739, 891, 1167, 1211, 1224
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 4 cut(s) 346, 372, 495, 682
ApeKI GCWGC 2 cut(s) 107, 710
Asp718I GGTACC 1 cut(s) 854
AspA2I CCTAGG 1 cut(s) 668
AspS9I GGNCC 5 cut(s) 347, 373, 496, 683, 695
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 4 cut(s) 183, 454, 642, 656
AvaII GGWCC 1 cut(s) 695
AvrII CCTAGG 1 cut(s) 668
BaeI ACNNNNGTAYC 4 cut(s) 382, 415, 838, 871
BamHI GGATCC 1 cut(s) 1216
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 2 cut(s) 169, 252
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 2 cut(s) 94, 697
BccI CCATC 5 cut(s) 41, 217, 238, 507, 706
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 4 cut(s) 290, 304, 692, 1078
BciVI GTATCC 2 cut(s) 289, 1224
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 6 cut(s) 9, 669, 687, 1002, 1026, 1172
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 661
BfuI GTATCC 2 cut(s) 289, 1224
BisI GCNGC 5 cut(s) 108, 682, 711, 1030, 1084
BlnI CCTAGG 1 cut(s) 668
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 5 cut(s) 109, 683, 712, 1031, 1085
Bme1390I CCNGG 5 cut(s) 120, 290, 304, 692, 1078
Bme18I GGWCC 1 cut(s) 695
BmeRI GACNNNNNGTC 1 cut(s) 640
BmgBI CACGTC 4 cut(s) 23, 357, 915, 1190
BmgT120I GGNCC 5 cut(s) 347, 373, 496, 683, 695
BmiI GGNNCC 3 cut(s) 696, 856, 1218
BmrFI CCNGG 5 cut(s) 120, 290, 304, 692, 1078
BmsI GCATC 5 cut(s) 67, 391, 408, 904, 1019
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 4 cut(s) 473, 505, 632, 664
BpmI CTGGAG 2 cut(s) 311, 759
Bpu10I CCTNAGC 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 13, 1114
BsaJI CCNNGG 7 cut(s) 118, 630, 668, 691, 1050, 1077, 1143
BsaWI WCCGGW 1 cut(s) 778
BsaXI ACNNNNNCTCC 6 cut(s) 218, 248, 871, 901, 1087, 1117
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 691, 692, 785, 989
Bse1I ACTGG 4 cut(s) 322, 427, 824, 1068
BseBI CCWGG 4 cut(s) 290, 304, 692, 1078
BseDI CCNNGG 7 cut(s) 118, 630, 668, 691, 1050, 1077, 1143
BseGI GGATG 3 cut(s) 228, 423, 457
BseLI CCNNNNNNNGG 5 cut(s) 309, 691, 692, 785, 989
BseMII CTCAG 6 cut(s) 182, 218, 516, 603, 873, 983
BseNI ACTGG 4 cut(s) 322, 427, 824, 1068
BseXI GCAGC 2 cut(s) 94, 697
BseYI CCCAGC 1 cut(s) 891
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 4 cut(s) 348, 374, 497, 684
BshNI GGYRCC 1 cut(s) 854
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 120, 509, 779
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 5 cut(s) 309, 691, 692, 785, 989
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 4 cut(s) 348, 374, 497, 684
Bsp1286I GDGCHC 2 cut(s) 169, 252
Bsp143I GATC 4 cut(s) 731, 883, 1159, 1216
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp19I CCATGG 2 cut(s) 630, 1143
BspACI CCGC 9 cut(s) 62, 183, 208, 278, 300, 681, 927, 1029, 1083
BspANI GGCC 4 cut(s) 348, 374, 497, 684
BspCNI CTCAG 6 cut(s) 181, 217, 517, 604, 872, 982
BspLI GGNNCC 3 cut(s) 696, 856, 1218
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 5 cut(s) 739, 891, 1167, 1211, 1224
BspT107I GGYRCC 1 cut(s) 854
BsrI ACTGG 4 cut(s) 322, 427, 824, 1068
BssECI CCNNGG 7 cut(s) 118, 630, 668, 691, 1050, 1077, 1143
BssMI GATC 4 cut(s) 731, 883, 1159, 1216
BssNI GRCGYC 2 cut(s) 13, 1114
BssT1I CCWWGG 4 cut(s) 630, 668, 1050, 1143
Bst2UI CCWGG 4 cut(s) 290, 304, 692, 1078
Bst4CI ACNGT 7 cut(s) 90, 142, 390, 597, 602, 813, 851
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 2 cut(s) 13, 1114
BstC8I GCNNGC 2 cut(s) 150, 346
BstDEI CTNAG 8 cut(s) 153, 168, 204, 525, 612, 702, 859, 969
BstDSI CCRYGG 2 cut(s) 630, 1143
BstF5I GGATG 3 cut(s) 228, 423, 457
BstKTI GATC 4 cut(s) 734, 886, 1162, 1219
BstMBI GATC 4 cut(s) 731, 883, 1159, 1216
BstMWI GCNNNNNNNGC 2 cut(s) 687, 924
BstNI CCWGG 4 cut(s) 290, 304, 692, 1078
BstSCI CCNGG 5 cut(s) 118, 288, 302, 690, 1076
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 94, 697
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 731, 1216
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 2 cut(s) 731, 1216
BsuI GTATCC 2 cut(s) 289, 1224
BsuRI GGCC 4 cut(s) 348, 374, 497, 684
BtgI CCRYGG 2 cut(s) 630, 1143
BtrI CACGTC 4 cut(s) 23, 357, 915, 1190
BtsCI GGATG 3 cut(s) 228, 423, 457
BtsIMutI CAGTG 4 cut(s) 129, 468, 835, 929
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 2 cut(s) 150, 346
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 5 cut(s) 347, 373, 496, 683, 695
CseI GACGC 2 cut(s) 21, 983
Csp6I GTAC 7 cut(s) 113, 391, 522, 598, 847, 855, 1176
CviAII CATG 5 cut(s) 503, 631, 1007, 1139, 1144
CviQI GTAC 7 cut(s) 113, 391, 522, 598, 847, 855, 1176
DdeI CTNAG 8 cut(s) 153, 168, 204, 525, 612, 702, 859, 969
DpnI GATC 4 cut(s) 733, 885, 1161, 1218
DpnII GATC 4 cut(s) 731, 883, 1159, 1216
DrdI GACNNNNNNGTC 1 cut(s) 936
DriI GACNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 936
Eam1104I CTCTTC 1 cut(s) 440
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 4 cut(s) 630, 668, 1050, 1143
Eco24I GRGCYC 2 cut(s) 169, 252
Eco32I GATATC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 288, 302, 690, 1076
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 4 cut(s) 630, 668, 1050, 1143
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 2 cut(s) 169, 252
ErhI CCWWGG 4 cut(s) 630, 668, 1050, 1143
FaeI CATG 5 cut(s) 506, 634, 1010, 1142, 1147
FaqI GGGAC 1 cut(s) 570
FatI CATG 5 cut(s) 502, 630, 1006, 1138, 1143
Fnu4HI GCNGC 5 cut(s) 108, 682, 711, 1030, 1084
FokI GGATG 3 cut(s) 235, 430, 464
FriOI GRGCYC 2 cut(s) 169, 252
Fsp4HI GCNGC 5 cut(s) 108, 682, 711, 1030, 1084
FspBI CTAG 6 cut(s) 9, 669, 687, 1002, 1026, 1172
GluI GCNGC 5 cut(s) 108, 682, 711, 1030, 1084
GsaI CCCAGC 1 cut(s) 895
GsuI CTGGAG 2 cut(s) 311, 759
HaeIII GGCC 4 cut(s) 348, 374, 497, 684
HapII CCGG 3 cut(s) 120, 509, 779
HgaI GACGC 2 cut(s) 21, 983
Hin1I GRCGYC 2 cut(s) 13, 1114
Hin1II CATG 5 cut(s) 506, 634, 1010, 1142, 1147
HinfI GANTC 8 cut(s) 67, 538, 641, 647, 674, 764, 867, 967
HpaII CCGG 3 cut(s) 120, 509, 779
HphI GGTGA 4 cut(s) 183, 454, 642, 656
Hpy166II GTNNAC 5 cut(s) 125, 315, 386, 809, 1112
Hpy188I TCNGA 6 cut(s) 171, 417, 646, 763, 817, 862
Hpy188III TCNNGA 5 cut(s) 433, 729, 738, 971, 1014
Hpy8I GTNNAC 5 cut(s) 125, 315, 386, 809, 1112
Hpy99I CGWCG 4 cut(s) 992, 1110, 1187, 1214
HpyAV CCTTC 2 cut(s) 259, 942
HpyCH4III ACNGT 7 cut(s) 90, 142, 390, 597, 602, 813, 851
HpyCH4IV ACGT 8 cut(s) 22, 356, 914, 987, 1114, 1164, 1189, 1237
HpyCH4V TGCA 5 cut(s) 74, 283, 338, 421, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 687, 924
HpyF3I CTNAG 8 cut(s) 153, 168, 204, 525, 612, 702, 859, 969
HpySE526I ACGT 8 cut(s) 22, 356, 914, 987, 1114, 1164, 1189, 1237
Hsp92I GRCGYC 2 cut(s) 13, 1114
Hsp92II CATG 5 cut(s) 506, 634, 1010, 1142, 1147
KpnI GGTACC 1 cut(s) 858
Kzo9I GATC 4 cut(s) 731, 883, 1159, 1216
LmnI GCTCC 3 cut(s) 145, 247, 255
Lsp1109I GCAGC 2 cut(s) 94, 697
LweI GCATC 5 cut(s) 67, 391, 408, 904, 1019
MaeI CTAG 6 cut(s) 9, 669, 687, 1002, 1026, 1172
MaeII ACGT 8 cut(s) 22, 356, 914, 987, 1114, 1164, 1189, 1237
MaeIII GTNAC 1 cut(s) 910
MalI GATC 4 cut(s) 733, 885, 1161, 1218
MboI GATC 4 cut(s) 731, 883, 1159, 1216
MboII GAAGA 3 cut(s) 30, 457, 726
MflI RGATCY 2 cut(s) 731, 1216
MhlI GDGCHC 2 cut(s) 169, 252
MluCI AATT 2 cut(s) 271, 1042
MlyI GAGTC 4 cut(s) 641, 650, 758, 961
MmeI TCCRAC 1 cut(s) 447
Mph1103I ATGCAT 1 cut(s) 1012
MseI TTAA 4 cut(s) 270, 411, 573, 795
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 3 cut(s) 120, 509, 779
MspR9I CCNGG 5 cut(s) 120, 290, 304, 692, 1078
MvaI CCWGG 4 cut(s) 290, 304, 692, 1078
MwoI GCNNNNNNNGC 2 cut(s) 687, 924
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 2 cut(s) 630, 1143
NdeII GATC 4 cut(s) 731, 883, 1159, 1216
NlaIII CATG 5 cut(s) 506, 634, 1010, 1142, 1147
NlaIV GGNNCC 3 cut(s) 696, 856, 1218
NmuCI GTSAC 1 cut(s) 910
NsiI ATGCAT 1 cut(s) 1012
PaqCI CACCTGC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 2 cut(s) 19, 1111
PfeI GAWTC 4 cut(s) 67, 538, 674, 867
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 5 cut(s) 109, 683, 712, 1031, 1085
PleI GAGTC 4 cut(s) 641, 649, 758, 961
PpsI GAGTC 4 cut(s) 641, 649, 758, 961
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 4 cut(s) 288, 302, 690, 1076
PspFI CCCAGC 1 cut(s) 891
PspGI CCWGG 4 cut(s) 288, 302, 690, 1076
PspN4I GGNNCC 3 cut(s) 696, 856, 1218
PspPI GGNCC 5 cut(s) 347, 373, 496, 683, 695
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 731, 1216
RsaI GTAC 7 cut(s) 114, 392, 523, 599, 848, 856, 1177
RsaNI GTAC 7 cut(s) 113, 391, 522, 598, 847, 855, 1176
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 270, 411, 573, 795
SatI GCNGC 5 cut(s) 108, 682, 711, 1030, 1084
Sau3AI GATC 4 cut(s) 731, 883, 1159, 1216
Sau96I GGNCC 5 cut(s) 347, 373, 496, 683, 695
SchI GAGTC 4 cut(s) 641, 650, 758, 961
ScrFI CCNGG 5 cut(s) 120, 290, 304, 692, 1078
SduI GDGCHC 2 cut(s) 169, 252
SfaNI GCATC 5 cut(s) 67, 391, 408, 904, 1019
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 2 cut(s) 271, 1042
SsiI CCGC 9 cut(s) 62, 183, 208, 278, 300, 681, 927, 1029, 1083
SspMI CTAG 6 cut(s) 9, 669, 687, 1002, 1026, 1172
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 5 cut(s) 118, 288, 302, 690, 1076
StyI CCWWGG 4 cut(s) 630, 668, 1050, 1143
TaaI ACNGT 7 cut(s) 90, 142, 390, 597, 602, 813, 851
TaiI ACGT 8 cut(s) 25, 359, 917, 990, 1117, 1167, 1192, 1240
TaqI TCGA 2 cut(s) 767, 1209
TaqII GACCGA 1 cut(s) 980
TasI AATT 2 cut(s) 271, 1042
TauI GCSGC 3 cut(s) 684, 1032, 1086
TfiI GAWTC 4 cut(s) 67, 538, 674, 867
Tru1I TTAA 4 cut(s) 270, 411, 573, 795
Tru9I TTAA 4 cut(s) 270, 411, 573, 795
TscAI CASTG 4 cut(s) 136, 468, 835, 929
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 2 cut(s) 107, 710
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 1 cut(s) 1127
TspGWI ACGGA 2 cut(s) 1108, 1200
TspRI CASTG 4 cut(s) 136, 468, 835, 929
VpaK11BI GGWCC 1 cut(s) 695
XmaJI CCTAGG 1 cut(s) 668
XspI CTAG 6 cut(s) 9, 669, 687, 1002, 1026, 1172
ZraI GACGTC 1 cut(s) 1115
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.