transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 69 - 133 | 1.2e-27 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 297 |
| AccBSI | CCGCTC | 1 cut(s) | 146 |
| AciI | CCGC | 2 cut(s) | 144, 524 |
| AclWI | GGATC | 1 cut(s) | 401 |
| AcsI | RAATTY | 1 cut(s) | 194 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 239 |
| AgeI | ACCGGT | 1 cut(s) | 472 |
| AgsI | TTSAA | 1 cut(s) | 200 |
| AluBI | AGCT | 4 cut(s) | 76, 271, 356, 566 |
| AluI | AGCT | 4 cut(s) | 76, 271, 356, 566 |
| AlwI | GGATC | 1 cut(s) | 401 |
| Ama87I | CYCGRG | 1 cut(s) | 277 |
| AoxI | GGCC | 2 cut(s) | 82, 289 |
| ApeKI | GCWGC | 3 cut(s) | 421, 430, 595 |
| ApoI | RAATTY | 1 cut(s) | 194 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 436, 468 |
| AsiGI | ACCGGT | 1 cut(s) | 472 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 474 |
| AspS9I | GGNCC | 2 cut(s) | 83, 290 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| AvaI | CYCGRG | 1 cut(s) | 277 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 372, 404 |
| BbvI | GCAGC | 3 cut(s) | 408, 442, 607 |
| BciVI | GTATCC | 3 cut(s) | 354, 391, 612 |
| BfaI | CTAG | 1 cut(s) | 357 |
| BfuI | GTATCC | 3 cut(s) | 354, 391, 612 |
| BglII | AGATCT | 1 cut(s) | 187 |
| BisI | GCNGC | 3 cut(s) | 422, 431, 596 |
| BlpI | GCTNAGC | 1 cut(s) | 272 |
| BlsI | GCNGC | 3 cut(s) | 423, 432, 597 |
| BmeT110I | CYCGRG | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 2 cut(s) | 83, 290 |
| BmiI | GGNNCC | 2 cut(s) | 6, 471 |
| BmsI | GCATC | 1 cut(s) | 582 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 120, 152 |
| BpmI | CTGGAG | 1 cut(s) | 330 |
| Bpu10I | CCTNAGC | 1 cut(s) | 506 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 272 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 2 cut(s) | 233, 278 |
| BsaWI | WCCGGW | 1 cut(s) | 472 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 19, 49 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 239 |
| Bse118I | RCCGGY | 1 cut(s) | 472 |
| BseDI | CCNNGG | 2 cut(s) | 233, 278 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BseRI | GAGGAG | 1 cut(s) | 596 |
| BseXI | GCAGC | 3 cut(s) | 408, 442, 607 |
| BshFI | GGCC | 2 cut(s) | 84, 291 |
| BshTI | ACCGGT | 1 cut(s) | 472 |
| BsiHKCI | CYCGRG | 1 cut(s) | 277 |
| BsiSI | CCGG | 1 cut(s) | 473 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 239 |
| BsnI | GGCC | 2 cut(s) | 84, 291 |
| BsoBI | CYCGRG | 1 cut(s) | 277 |
| Bsp143I | GATC | 3 cut(s) | 187, 406, 487 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 272 |
| BspACI | CCGC | 2 cut(s) | 144, 524 |
| BspANI | GGCC | 2 cut(s) | 84, 291 |
| BspLI | GGNNCC | 2 cut(s) | 6, 471 |
| BspPI | GGATC | 1 cut(s) | 401 |
| BsrBI | CCGCTC | 1 cut(s) | 146 |
| BsrFI | RCCGGY | 1 cut(s) | 472 |
| BssAI | RCCGGY | 1 cut(s) | 472 |
| BssECI | CCNNGG | 2 cut(s) | 233, 278 |
| BssMI | GATC | 3 cut(s) | 187, 406, 487 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst6I | CTCTTC | 3 cut(s) | 155, 459, 617 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 592 |
| BstC8I | GCNNGC | 1 cut(s) | 41 |
| BstDEI | CTNAG | 2 cut(s) | 272, 506 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 237 |
| BstKTI | GATC | 3 cut(s) | 190, 409, 490 |
| BstMBI | GATC | 3 cut(s) | 187, 406, 487 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 340, 427, 430, 592 |
| BstV1I | GCAGC | 3 cut(s) | 408, 442, 607 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| BsuI | GTATCC | 3 cut(s) | 354, 391, 612 |
| BsuRI | GGCC | 2 cut(s) | 84, 291 |
| BtsI | GCAGTG | 1 cut(s) | 38 |
| BtsIMutI | CAGTG | 1 cut(s) | 38 |
| Cac8I | GCNNGC | 1 cut(s) | 41 |
| Cfr10I | RCCGGY | 1 cut(s) | 472 |
| Cfr13I | GGNCC | 2 cut(s) | 83, 290 |
| CspAI | ACCGGT | 1 cut(s) | 472 |
| CviAII | CATG | 4 cut(s) | 98, 377, 385, 416 |
| DdeI | CTNAG | 2 cut(s) | 272, 506 |
| DpnI | GATC | 3 cut(s) | 189, 408, 489 |
| DpnII | GATC | 3 cut(s) | 187, 406, 487 |
| Eam1104I | CTCTTC | 3 cut(s) | 155, 459, 617 |
| EarI | CTCTTC | 3 cut(s) | 155, 459, 617 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco88I | CYCGRG | 1 cut(s) | 277 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 237 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| FaeI | CATG | 4 cut(s) | 101, 380, 388, 419 |
| FatI | CATG | 4 cut(s) | 97, 376, 384, 415 |
| Fnu4HI | GCNGC | 3 cut(s) | 422, 431, 596 |
| Fsp4HI | GCNGC | 3 cut(s) | 422, 431, 596 |
| FspBI | CTAG | 1 cut(s) | 357 |
| GluI | GCNGC | 3 cut(s) | 422, 431, 596 |
| GsuI | CTGGAG | 1 cut(s) | 330 |
| HaeIII | GGCC | 2 cut(s) | 84, 291 |
| HapII | CCGG | 1 cut(s) | 473 |
| Hin1II | CATG | 4 cut(s) | 101, 380, 388, 419 |
| HindIII | AAGCTT | 1 cut(s) | 269 |
| HinfI | GANTC | 3 cut(s) | 135, 481, 575 |
| HpaII | CCGG | 1 cut(s) | 473 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 3 cut(s) | 480, 580, 617 |
| Hpy188III | TCNNGA | 4 cut(s) | 139, 220, 347, 485 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| HpyAV | CCTTC | 1 cut(s) | 420 |
| HpyCH4IV | ACGT | 1 cut(s) | 262 |
| HpyCH4V | TGCA | 3 cut(s) | 170, 424, 595 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 340, 427, 430, 592 |
| HpyF3I | CTNAG | 2 cut(s) | 272, 506 |
| HpySE526I | ACGT | 1 cut(s) | 262 |
| Hsp92II | CATG | 4 cut(s) | 101, 380, 388, 419 |
| Kzo9I | GATC | 3 cut(s) | 187, 406, 487 |
| LmnI | GCTCC | 3 cut(s) | 10, 496, 583 |
| LpnPI | CCDG | 4 cut(s) | 99, 233, 360, 486 |
| Lsp1109I | GCAGC | 3 cut(s) | 408, 442, 607 |
| LweI | GCATC | 1 cut(s) | 582 |
| MaeI | CTAG | 1 cut(s) | 357 |
| MaeII | ACGT | 1 cut(s) | 262 |
| MaeIII | GTNAC | 1 cut(s) | 100 |
| MalI | GATC | 3 cut(s) | 189, 408, 489 |
| MbiI | CCGCTC | 1 cut(s) | 146 |
| MboI | GATC | 3 cut(s) | 187, 406, 487 |
| MboII | GAAGA | 5 cut(s) | 124, 172, 476, 572, 604 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MluCI | AATT | 3 cut(s) | 194, 224, 519 |
| MlyI | GAGTC | 1 cut(s) | 129 |
| MmeI | TCCRAC | 1 cut(s) | 32 |
| MnlI | CCTC | 6 cut(s) | 7, 21, 273, 354, 460, 574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 474 |
| MseI | TTAA | 3 cut(s) | 92, 117, 192 |
| MspI | CCGG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 340, 427, 430, 592 |
| NdeII | GATC | 3 cut(s) | 187, 406, 487 |
| NlaIII | CATG | 4 cut(s) | 101, 380, 388, 419 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 471 |
| PdmI | GAANNNNTTC | 1 cut(s) | 474 |
| PfeI | GAWTC | 2 cut(s) | 481, 575 |
| PinAI | ACCGGT | 1 cut(s) | 472 |
| PkrI | GCNGC | 3 cut(s) | 423, 432, 597 |
| PleI | GAGTC | 1 cut(s) | 129 |
| PpsI | GAGTC | 1 cut(s) | 129 |
| PsiI | TTATAA | 1 cut(s) | 297 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 471 |
| PspPI | GGNCC | 2 cut(s) | 83, 290 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| SaqAI | TTAA | 3 cut(s) | 92, 117, 192 |
| SatI | GCNGC | 3 cut(s) | 422, 431, 596 |
| Sau3AI | GATC | 3 cut(s) | 187, 406, 487 |
| Sau96I | GGNCC | 2 cut(s) | 83, 290 |
| SchI | GAGTC | 1 cut(s) | 129 |
| SetI | ASST | 8 cut(s) | 78, 265, 273, 284, 358, 461, 537, 568 |
| SfaNI | GCATC | 1 cut(s) | 582 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| Sse9I | AATT | 3 cut(s) | 194, 224, 519 |
| SsiI | CCGC | 2 cut(s) | 144, 524 |
| SspMI | CTAG | 1 cut(s) | 357 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaiI | ACGT | 1 cut(s) | 265 |
| TaqI | TCGA | 1 cut(s) | 490 |
| TasI | AATT | 3 cut(s) | 194, 224, 519 |
| TfiI | GAWTC | 2 cut(s) | 481, 575 |
| Tru1I | TTAA | 3 cut(s) | 92, 117, 192 |
| Tru9I | TTAA | 3 cut(s) | 92, 117, 192 |
| TscAI | CASTG | 1 cut(s) | 38 |
| TseI | GCWGC | 3 cut(s) | 421, 430, 595 |
| TspDTI | ATGAA | 3 cut(s) | 72, 365, 477 |
| TspGWI | ACGGA | 1 cut(s) | 167 |
| TspRI | CASTG | 1 cut(s) | 38 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 237 |
| XapI | RAATTY | 1 cut(s) | 194 |
| XmnI | GAANNNNTTC | 1 cut(s) | 474 |
| XspI | CTAG | 1 cut(s) | 357 |