RchiOBHm_Chr7g0197101

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000094
Physical Location & Seq
Forward (+)
15036399 .. 15039716
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17632

Sequence Viewer

Length: 1680 bp
ATGTTGAACATGGTTGATGGATTTGTCATGTTTGTAAATGTGGAATTGTTCTATTTTGTGGAGGAGTTTGGAGTGGAGATTGTGTTTTGGAAAAGAAAATCTAGAGAGGAGTTGAAATTTAGAGATGGAATTGACGTACTGAGCCCTCGAGCGAGGAGGACACAGACAGGCAGCAGGGTTAGCTGCGGGATTTACTTATTTCAGATTTGCCGAGATCGCGTCCAGGTTCTAGAGACTTTGGAATCAGCGCTTCCGTTTTTGTCCGTAGGTGGAATGAGACCCGGACGCAGATCTCGTGCTAGTAGTGACCCTTTACCCACTGGTGAGGGTGATGATGAGCAGGTCCCTCGTGGGTTGCTACGGACCATGGAGCAGTTGTTTGAGTGTTTTAGAGCGGCACTCCCAAATCCTAGGACTGACTATACTGTGGAGCGTGCCAGACGCCATGGGGCGTATACTTTCTCTAGTGCTCCTACGGAGTCTGTAGCAGGAGACTGGATTACCCGCATGGAGAGAGTATTTGAGTCCTTGGGTTGTCCAGCTGCTAGGAGGGTTCCTTTGGCTATTGACCTCCTAGACGGGGATGCATGGCTTTGGTGGCAGGGTACCAGGAATATGGGTATTGACCCAACTACCATGACTTGGGAAGAGTTCAAAACGGAGTTCTCAAATCGGTACTATAATCAGGCATCCCAGCACCGTCTCCGATTTGATTTCATGCAGTTGAAGCAGACTGAAGAGATGACTGTGTTGCAGTATGAGGAGCGTTTCATTGCTTTGTCTCGGTTTGCCCCTGGGTTGGTGGCGACAGAAAAGTTGAAGGTTGATCAGTTTATCAATGGCCTCCTACCTATATATAGAGATTGGTTGGCGCCTCATGATTATCCGACTTTTAAGTTAGCTGTGGAGGCTTCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCCAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACTGAGCAGTTCAGATTCTAGCTCTCGTCAGCGTTTCAGGGGACGCTTCAGGAGGTCTGGGCAGACAGGTAGGAGACAGTTCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGTAGACAGGCGATTCCGAGAGACTATCCCCAGTGTACTACTTGTGGTAGGCACCATGTGGGCCCGTGTCAGGCAGGTGTGGGGATTTGTTACCAGTGTGGCCAGTGGGGTCACTACAGGAGAGAATGCCCTCAGTTGACCCAGGGAGTCTTCACTACTACTAGTCAGAGTATGGGTCAGACCTCTGTGGGTGCTACTAGTTCGGGGTCTCATGGCAGTTTGTCAGGCAGGAGCAGCACTCAGCCGGGTCTTGGACAGAGAGGGCGTCCAGTGACCCAGGCCCGTCTTCATGCTATGACCCAGCAGGAGGGTCGCACTGCACCGAACATCATTATGGGTATGTTAATTGTTTTTGGCCAACCAGCTTTCATTTTGATTGATCCTGGAGCCTCTCACTCCTTTATGTCTAAGAGGTTTTCTTTCTTTGCTATGTGCCCCCATCTCTCCTACTCGGAGAGTGGCATGTTGTTCTACCATCGGGGGAAAGACATAGAATTGAGTGGGTACATCGTTTTTGTGGAGTGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

559

Amino Acids

62.71

Weight (kDa)

9.28

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 191 - 283 1.2e-15 Retrotransposon gag protein
Ty3_capsid PF19259 191 - 308 5.9e-08 Ty3 transposon capsid-like protein
RVP_2 PF08284 474 - 523 9.3e-11 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1214
Acc36I ACCTGC 2 cut(s) 331, 1214
Acc65I GGTACC 1 cut(s) 605
AccB1I GGYRCC 3 cut(s) 605, 871, 1200
AccB7I CCANNNNNTGG 1 cut(s) 642
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 3 cut(s) 455, 1033, 1153
AccII CGCG 1 cut(s) 219
AciI CCGC 4 cut(s) 186, 395, 505, 966
AclWI GGATC 1 cut(s) 1523
AcoI YGGCCR 2 cut(s) 1249, 1504
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 756, 1066
AcyI GRCGYC 3 cut(s) 442, 872, 1414
AdeI CACNNNGTG 1 cut(s) 1207
AfaI GTAC 5 cut(s) 138, 607, 677, 1186, 1655
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 9 cut(s) 580, 642, 799, 955, 977, 978, 1219, 1400, 1456
AgsI TTSAA 5 cut(s) 7, 115, 655, 727, 820
AhlI ACTAGT 2 cut(s) 1310, 1346
AjnI CCWGG 6 cut(s) 222, 608, 793, 1290, 1425, 1531
AluBI AGCT 5 cut(s) 183, 542, 902, 1056, 1514
AluI AGCT 5 cut(s) 183, 542, 902, 1056, 1514
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 8 cut(s) 227, 271, 486, 707, 786, 1102, 1164, 1362
AlwI GGATC 1 cut(s) 1523
Ama87I CYCGRG 1 cut(s) 147
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 6 cut(s) 841, 980, 1210, 1249, 1428, 1504
ApaI GGGCCC 1 cut(s) 1214
ApeKI GCWGC 4 cut(s) 171, 183, 542, 1383
ApoI RAATTY 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 605
AspA2I CCTAGG 1 cut(s) 410
AspLEI GCGC 2 cut(s) 250, 874
AspS9I GGNCC 7 cut(s) 343, 363, 968, 980, 1210, 1211, 1429
AsuC2I CCSGG 2 cut(s) 282, 1395
AsuHPI GGTGA 2 cut(s) 335, 341
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 3 cut(s) 343, 363, 968
AvrII CCTAGG 1 cut(s) 410
BaeGI GKGCMC 2 cut(s) 1214, 1586
BalI TGGCCA 2 cut(s) 1251, 1506
BanI GGYRCC 3 cut(s) 605, 871, 1200
BanII GRGCYC 2 cut(s) 146, 1214
BauI CACGAG 2 cut(s) 294, 348
BbsI GAAGAC 2 cut(s) 1291, 1427
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 4 cut(s) 170, 183, 529, 1395
BccI CCATC 5 cut(s) 11, 119, 991, 1596, 1632
BcgI CGANNNNNNTGC 4 cut(s) 329, 363, 1442, 1476
BciT130I CCWGG 6 cut(s) 224, 610, 795, 1292, 1427, 1533
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 2 cut(s) 282, 1395
BcoDI GTCTC 8 cut(s) 227, 271, 486, 707, 786, 1102, 1164, 1362
BcuI ACTAGT 2 cut(s) 1310, 1346
BfmI CTRYAG 2 cut(s) 483, 1264
BfoI RGCGCY 2 cut(s) 251, 875
BfuAI ACCTGC 2 cut(s) 331, 1214
BglII AGATCT 1 cut(s) 290
BisI GCNGC 5 cut(s) 172, 184, 396, 543, 1384
BlnI CCTAGG 1 cut(s) 410
BlsI GCNGC 5 cut(s) 173, 185, 397, 544, 1385
Bme1390I CCNGG 8 cut(s) 224, 282, 610, 795, 1292, 1395, 1427, 1533
Bme18I GGWCC 3 cut(s) 343, 363, 968
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 7 cut(s) 343, 363, 968, 980, 1210, 1211, 1429
BmrFI CCNGG 8 cut(s) 224, 282, 610, 795, 1292, 1395, 1427, 1533
BmrI ACTGGG 2 cut(s) 966, 1174
BmsI GCATC 3 cut(s) 574, 698, 1025
BmuI ACTGGG 2 cut(s) 966, 1174
BpiI GAAGAC 2 cut(s) 1291, 1427
BplI GAGNNNNNCTC 4 cut(s) 384, 416, 1372, 1404
BpmI CTGGAG 2 cut(s) 985, 1554
BpuMI CCSGG 2 cut(s) 282, 1395
BsaHI GRCGYC 3 cut(s) 442, 872, 1414
BsaI GGTCTC 2 cut(s) 271, 1362
BsaJI CCNNGG 9 cut(s) 366, 410, 445, 528, 793, 794, 1290, 1291, 1425
BsaXI ACNNNNNCTCC 5 cut(s) 68, 98, 362, 392, 1661
Bsc4I CCNNNNNNNGG 9 cut(s) 580, 642, 799, 955, 977, 978, 1219, 1400, 1456
Bse1I ACTGG 9 cut(s) 325, 500, 972, 1002, 1137, 1180, 1243, 1252, 1418
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 6 cut(s) 224, 610, 795, 1292, 1427, 1533
BseDI CCNNGG 9 cut(s) 366, 410, 445, 528, 793, 794, 1290, 1291, 1425
BseGI GGATG 2 cut(s) 589, 689
BseLI CCNNNNNNNGG 9 cut(s) 580, 642, 799, 955, 977, 978, 1219, 1400, 1456
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 4 cut(s) 131, 1028, 1295, 1403
BseNI ACTGG 9 cut(s) 325, 500, 972, 1002, 1137, 1180, 1243, 1252, 1418
BseRI GAGGAG 4 cut(s) 77, 122, 169, 776
BseSI GKGCMC 2 cut(s) 1214, 1586
BseXI GCAGC 4 cut(s) 170, 183, 529, 1395
BseYI CCCAGC 2 cut(s) 693, 1449
BsgI GTGCAG 1 cut(s) 1452
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 6 cut(s) 843, 982, 1212, 1251, 1430, 1506
BshNI GGYRCC 3 cut(s) 605, 871, 1200
BsiHKAI GWGCWC 1 cut(s) 472
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 282, 1394
BslFI GGGAC 3 cut(s) 329, 954, 1089
BslI CCNNNNNNNGG 9 cut(s) 580, 642, 799, 955, 977, 978, 1219, 1400, 1456
BsmAI GTCTC 8 cut(s) 227, 271, 486, 707, 786, 1102, 1164, 1362
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 3 cut(s) 329, 954, 1089
BsmI GAATGC 1 cut(s) 1280
BsnI GGCC 6 cut(s) 843, 982, 1212, 1251, 1430, 1506
Bso31I GGTCTC 2 cut(s) 271, 1362
BsoBI CYCGRG 1 cut(s) 147
Bsp120I GGGCCC 1 cut(s) 1210
Bsp1286I GDGCHC 4 cut(s) 146, 472, 1214, 1586
Bsp143I GATC 4 cut(s) 214, 290, 826, 1528
Bsp19I CCATGG 2 cut(s) 366, 445
BspACI CCGC 4 cut(s) 186, 395, 505, 966
BspANI GGCC 6 cut(s) 843, 982, 1212, 1251, 1430, 1506
BspCNI CTCAG 4 cut(s) 132, 1029, 1294, 1402
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 1 cut(s) 877
BspMI ACCTGC 2 cut(s) 331, 1214
BspPI GGATC 1 cut(s) 1523
BspT107I GGYRCC 3 cut(s) 605, 871, 1200
BspTNI GGTCTC 2 cut(s) 271, 1362
BsrBI CCGCTC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 9 cut(s) 325, 500, 972, 1002, 1137, 1180, 1243, 1252, 1418
BssECI CCNNGG 9 cut(s) 366, 410, 445, 528, 793, 794, 1290, 1291, 1425
BssMI GATC 4 cut(s) 214, 290, 826, 1528
BssNAI GTATAC 1 cut(s) 456
BssNI GRCGYC 3 cut(s) 442, 872, 1414
BssSI CACGAG 2 cut(s) 294, 348
BssT1I CCWWGG 4 cut(s) 366, 410, 445, 528
Bst1107I GTATAC 1 cut(s) 456
Bst2BI CACGAG 2 cut(s) 294, 348
Bst2UI CCWGG 6 cut(s) 224, 610, 795, 1292, 1427, 1533
Bst4CI ACNGT 5 cut(s) 427, 701, 748, 944, 1113
Bst6I CTCTTC 2 cut(s) 642, 732
BstACI GRCGYC 3 cut(s) 442, 872, 1414
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 6 cut(s) 140, 987, 1037, 1281, 1389, 1557
BstDSI CCRYGG 2 cut(s) 366, 445
BstF5I GGATG 2 cut(s) 589, 689
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 2 cut(s) 251, 875
BstHHI GCGC 2 cut(s) 250, 874
BstKTI GATC 4 cut(s) 217, 293, 829, 1531
BstMAI GTCTC 8 cut(s) 227, 271, 486, 707, 786, 1102, 1164, 1362
BstMBI GATC 4 cut(s) 214, 290, 826, 1528
BstMWI GCNNNNNNNGC 6 cut(s) 180, 216, 598, 727, 908, 1383
BstNI CCWGG 6 cut(s) 224, 610, 795, 1292, 1427, 1533
BstNSI RCATGY 1 cut(s) 1615
BstSCI CCNGG 8 cut(s) 222, 280, 608, 793, 1290, 1393, 1425, 1531
BstSFI CTRYAG 2 cut(s) 483, 1264
BstSLI GKGCMC 2 cut(s) 1214, 1586
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 4 cut(s) 170, 183, 529, 1395
BstV2I GAAGAC 2 cut(s) 1291, 1427
BstX2I RGATCY 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 1 cut(s) 290
BstZ17I GTATAC 1 cut(s) 456
BsuRI GGCC 6 cut(s) 843, 982, 1212, 1251, 1430, 1506
BtgI CCRYGG 2 cut(s) 366, 445
BtsCI GGATG 2 cut(s) 589, 689
BtsI GCAGTG 2 cut(s) 1125, 1464
BtsIMutI CAGTG 8 cut(s) 318, 1125, 1144, 1187, 1250, 1259, 1425, 1464
BveI ACCTGC 2 cut(s) 331, 1214
Cac8I GCNNGC 1 cut(s) 435
CciI TCATGA 1 cut(s) 877
CfoI GCGC 2 cut(s) 250, 874
Cfr13I GGNCC 7 cut(s) 343, 363, 968, 980, 1210, 1211, 1429
CseI GACGC 5 cut(s) 208, 294, 450, 1086, 1403
Csp6I GTAC 5 cut(s) 137, 606, 676, 1185, 1654
CviQI GTAC 5 cut(s) 137, 606, 676, 1185, 1654
DdeI CTNAG 6 cut(s) 140, 987, 1037, 1281, 1389, 1557
DinI GGCGCC 1 cut(s) 873
DpnI GATC 4 cut(s) 216, 292, 828, 1530
DpnII GATC 4 cut(s) 214, 290, 826, 1528
DraIII CACNNNGTG 1 cut(s) 1207
EaeI YGGCCR 2 cut(s) 1249, 1504
Eam1104I CTCTTC 2 cut(s) 642, 732
EarI CTCTTC 2 cut(s) 642, 732
Eco130I CCWWGG 4 cut(s) 366, 410, 445, 528
Eco24I GRGCYC 2 cut(s) 146, 1214
Eco31I GGTCTC 2 cut(s) 271, 1362
Eco32I GATATC 1 cut(s) 935
Eco47I GGWCC 3 cut(s) 343, 363, 968
Eco47III AGCGCT 1 cut(s) 249
Eco57I CTGAAG 2 cut(s) 756, 1066
Eco88I CYCGRG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 6 cut(s) 222, 608, 793, 1290, 1425, 1531
EcoRV GATATC 1 cut(s) 935
EcoT14I CCWWGG 4 cut(s) 366, 410, 445, 528
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 2 cut(s) 146, 1214
EgeI GGCGCC 1 cut(s) 873
EheI GGCGCC 1 cut(s) 873
ErhI CCWWGG 4 cut(s) 366, 410, 445, 528
Esp3I CGTCTC 1 cut(s) 707
FaqI GGGAC 3 cut(s) 329, 954, 1089
FauI CCCGC 2 cut(s) 179, 512
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 3 cut(s) 455, 1033, 1153
Fnu4HI GCNGC 5 cut(s) 172, 184, 396, 543, 1384
FokI GGATG 2 cut(s) 596, 676
FriOI GRGCYC 2 cut(s) 146, 1214
Fsp4HI GCNGC 5 cut(s) 172, 184, 396, 543, 1384
GlaI GCGC 2 cut(s) 249, 873
GluI GCNGC 5 cut(s) 172, 184, 396, 543, 1384
GsaI CCCAGC 2 cut(s) 697, 1453
GsuI CTGGAG 2 cut(s) 985, 1554
HaeII RGCGCY 2 cut(s) 251, 875
HaeIII GGCC 6 cut(s) 843, 982, 1212, 1251, 1430, 1506
HapII CCGG 2 cut(s) 282, 1394
HgaI GACGC 5 cut(s) 208, 294, 450, 1086, 1403
HhaI GCGC 2 cut(s) 250, 874
Hin1I GRCGYC 3 cut(s) 442, 872, 1414
Hin6I GCGC 2 cut(s) 248, 872
HinP1I GCGC 2 cut(s) 248, 872
HincII GTYRAC 1 cut(s) 1287
HindII GTYRAC 1 cut(s) 1287
HinfI GANTC 6 cut(s) 242, 479, 524, 1049, 1162, 1296
HpaII CCGG 2 cut(s) 282, 1394
HphI GGTGA 2 cut(s) 335, 341
Hpy166II GTNNAC 5 cut(s) 456, 1034, 1154, 1185, 1287
Hpy188I TCNGA 8 cut(s) 204, 707, 888, 1048, 1167, 1317, 1329, 1603
Hpy188III TCNNGA 6 cut(s) 102, 230, 878, 938, 948, 1084
Hpy8I GTNNAC 5 cut(s) 456, 1034, 1154, 1185, 1287
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 5 cut(s) 427, 701, 748, 944, 1113
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 587, 721, 754, 1016, 1469
HpyF10VI GCNNNNNNNGC 6 cut(s) 180, 216, 598, 727, 908, 1383
HpyF3I CTNAG 6 cut(s) 140, 987, 1037, 1281, 1389, 1557
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 3 cut(s) 442, 872, 1414
HspAI GCGC 2 cut(s) 248, 872
KasI GGCGCC 1 cut(s) 871
KpnI GGTACC 1 cut(s) 609
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 214, 290, 826, 1528
LmnI GCTCC 6 cut(s) 370, 430, 475, 763, 1380, 1535
Lsp1109I GCAGC 4 cut(s) 170, 183, 529, 1395
LweI GCATC 3 cut(s) 574, 698, 1025
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 305, 1238, 1259, 1420
MalI GATC 4 cut(s) 216, 292, 828, 1530
MbiI CCGCTC 1 cut(s) 395
MboI GATC 4 cut(s) 214, 290, 826, 1528
MboII GAAGA 4 cut(s) 659, 749, 1291, 1427
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 4 cut(s) 146, 472, 1214, 1586
MlsI TGGCCA 2 cut(s) 1251, 1506
MluCI AATT 6 cut(s) 44, 116, 129, 993, 1494, 1643
MluNI TGGCCA 2 cut(s) 1251, 1506
Mly113I GGCGCC 1 cut(s) 872
MlyI GAGTC 3 cut(s) 488, 533, 1305
MmeI TCCRAC 1 cut(s) 911
Mox20I TGGCCA 2 cut(s) 1251, 1506
Mph1103I ATGCAT 1 cut(s) 589
MscI TGGCCA 2 cut(s) 1251, 1506
MseI TTAA 2 cut(s) 894, 1493
MslI CAYNNNNRTG 1 cut(s) 1481
Msp20I TGGCCA 2 cut(s) 1251, 1506
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 2 cut(s) 282, 1394
MspR9I CCNGG 8 cut(s) 224, 282, 610, 795, 1292, 1395, 1427, 1533
Mva1269I GAATGC 1 cut(s) 1280
MvaI CCWGG 6 cut(s) 224, 610, 795, 1292, 1427, 1533
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 6 cut(s) 180, 216, 598, 727, 908, 1383
NarI GGCGCC 1 cut(s) 872
NciI CCSGG 2 cut(s) 282, 1395
NcoI CCATGG 2 cut(s) 366, 445
NdeII GATC 4 cut(s) 214, 290, 826, 1528
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 3 cut(s) 305, 1259, 1420
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 1 cut(s) 1615
PaeR7I CTCGAG 1 cut(s) 147
PagI TCATGA 1 cut(s) 877
PaqCI CACCTGC 1 cut(s) 1214
PasI CCCWGGG 2 cut(s) 794, 1291
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PctI GAATGC 1 cut(s) 1280
PfeI GAWTC 3 cut(s) 242, 1049, 1162
PflMI CCANNNNNTGG 1 cut(s) 642
PfoI TCCNGGA 1 cut(s) 1531
PkrI GCNGC 5 cut(s) 173, 185, 397, 544, 1385
PleI GAGTC 3 cut(s) 487, 532, 1304
PluTI GGCGCC 1 cut(s) 875
PpsI GAGTC 3 cut(s) 487, 532, 1304
PpuMI RGGWCCY 1 cut(s) 343
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 6 cut(s) 222, 608, 793, 1290, 1425, 1531
PspFI CCCAGC 2 cut(s) 693, 1449
PspGI CCWGG 6 cut(s) 222, 608, 793, 1290, 1425, 1531
PspOMI GGGCCC 1 cut(s) 1210
PspPI GGNCC 7 cut(s) 343, 363, 968, 980, 1210, 1211, 1429
PspPPI RGGWCCY 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 147
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 5 cut(s) 138, 607, 677, 1186, 1655
RsaNI GTAC 5 cut(s) 137, 606, 676, 1185, 1654
RseI CAYNNNNRTG 1 cut(s) 1481
SaqAI TTAA 2 cut(s) 894, 1493
SatI GCNGC 5 cut(s) 172, 184, 396, 543, 1384
Sau3AI GATC 4 cut(s) 214, 290, 826, 1528
Sau96I GGNCC 7 cut(s) 343, 363, 968, 980, 1210, 1211, 1429
SchI GAGTC 3 cut(s) 488, 533, 1305
ScrFI CCNGG 8 cut(s) 224, 282, 610, 795, 1292, 1395, 1427, 1533
SduI GDGCHC 4 cut(s) 146, 472, 1214, 1586
SfaNI GCATC 3 cut(s) 574, 698, 1025
SfcI CTRYAG 2 cut(s) 483, 1264
SfoI GGCGCC 1 cut(s) 873
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 3 cut(s) 343, 363, 968
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 1481
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SpeI ACTAGT 2 cut(s) 1310, 1346
Sse9I AATT 6 cut(s) 44, 116, 129, 993, 1494, 1643
SsiI CCGC 4 cut(s) 186, 395, 505, 966
SspDI GGCGCC 1 cut(s) 871
StyD4I CCNGG 8 cut(s) 222, 280, 608, 793, 1290, 1393, 1425, 1531
StyI CCWWGG 4 cut(s) 366, 410, 445, 528
TaaI ACNGT 5 cut(s) 427, 701, 748, 944, 1113
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 148
TasI AATT 6 cut(s) 44, 116, 129, 993, 1494, 1643
TatI WGTACW 1 cut(s) 1184
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 3 cut(s) 242, 1049, 1162
Tru1I TTAA 2 cut(s) 894, 1493
Tru9I TTAA 2 cut(s) 894, 1493
TscAI CASTG 8 cut(s) 325, 1132, 1144, 1187, 1250, 1259, 1425, 1471
TseFI GTSAC 3 cut(s) 305, 1259, 1420
TseI GCWGC 4 cut(s) 171, 183, 542, 1383
Tsp45I GTSAC 3 cut(s) 305, 1259, 1420
TspDTI ATGAA 4 cut(s) 706, 760, 1427, 1507
TspGWI ACGGA 5 cut(s) 243, 253, 376, 491, 674
TspRI CASTG 8 cut(s) 325, 1132, 1144, 1187, 1250, 1259, 1425, 1471
Van91I CCANNNNNTGG 1 cut(s) 642
VpaK11BI GGWCC 3 cut(s) 343, 363, 968
XapI RAATTY 1 cut(s) 116
XbaI TCTAGA 2 cut(s) 101, 229
XceI RCATGY 1 cut(s) 1615
XhoI CTCGAG 1 cut(s) 147
XmaJI CCTAGG 1 cut(s) 410
XmiI GTMKAC 3 cut(s) 455, 1033, 1153
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.