transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 52 - 207 | 4.7e-12 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 91 - 184 | 1.9e-16 | Retrotransposon gag protein |
| RVP_2 | PF08284 | 332 - 459 | 3.7e-27 | Retroviral aspartyl protease |
| RVT_1 | PF00078 | 589 - 748 | 1.1e-38 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 811 - 905 | 9.2e-31 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 838 - 935 | 1e-33 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1049 - 1106 | 5.2e-19 | Integrase zinc binding domain |
| SH3_Tf2-1 | PF24626 | 1338 - 1401 | 8.2e-24 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1672, 2032 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3881 |
| Acc36I | ACCTGC | 2 cut(s) | 1672, 2032 |
| AccB1I | GGYRCC | 2 cut(s) | 1660, 3811 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 351, 1657 |
| AccBSI | CCGCTC | 3 cut(s) | 124, 1357, 1708 |
| AccI | GTMKAC | 6 cut(s) | 1539, 2109, 3835, 3961, 4168, 4288 |
| AccII | CGCG | 3 cut(s) | 963, 1484, 1972 |
| AccIII | TCCGGA | 2 cut(s) | 184, 1965 |
| AclI | AACGTT | 1 cut(s) | 328 |
| AclWI | GGATC | 7 cut(s) | 117, 1229, 2046, 2261, 3237, 3575, 3582 |
| AcoI | YGGCCR | 2 cut(s) | 2060, 2343 |
| AcuI | CTGAAG | 4 cut(s) | 173, 608, 1098, 2526 |
| AcyI | GRCGYC | 1 cut(s) | 2853 |
| AdeI | CACNNNGTG | 1 cut(s) | 3668 |
| AflII | CTTAAG | 2 cut(s) | 2465, 2735 |
| AflIII | ACRYGT | 5 cut(s) | 43, 1422, 1448, 2236, 3007 |
| AgeI | ACCGGT | 2 cut(s) | 4056, 4279 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 819, 3164 |
| AjiI | CACGTC | 3 cut(s) | 44, 1425, 3599 |
| AjnI | CCWGG | 6 cut(s) | 1257, 1573, 2547, 3205, 4150, 4232 |
| AleI | CACNNNNGTG | 2 cut(s) | 1474, 3853 |
| Alw21I | GWGCWC | 3 cut(s) | 1683, 1750, 4210 |
| Alw26I | GTCTC | 6 cut(s) | 78, 509, 1412, 1431, 1459, 3902 |
| Alw44I | GTGCAC | 1 cut(s) | 4206 |
| AlwI | GGATC | 7 cut(s) | 117, 1229, 2046, 2261, 3237, 3575, 3582 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 35 |
| Ama87I | CYCGRG | 5 cut(s) | 75, 651, 1049, 1682, 1694 |
| Aor13HI | TCCGGA | 2 cut(s) | 184, 1965 |
| AoxI | GGCC | 4 cut(s) | 1140, 2060, 2343, 2545 |
| ApaLI | GTGCAC | 1 cut(s) | 4206 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2504, 2536 |
| AsiGI | ACCGGT | 2 cut(s) | 4056, 4279 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 710, 1527, 1715, 1947, 3756 |
| AspLEI | GCGC | 3 cut(s) | 963, 1342, 1486 |
| AspS9I | GGNCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| AsuC2I | CCSGG | 8 cut(s) | 1293, 1337, 1623, 2347, 2829, 3035, 3412, 4011 |
| AsuII | TTCGAA | 2 cut(s) | 562, 2523 |
| AsuNHI | GCTAGC | 1 cut(s) | 734 |
| AvaI | CYCGRG | 5 cut(s) | 75, 651, 1049, 1682, 1694 |
| AvaII | GGWCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| BaeGI | GKGCMC | 2 cut(s) | 807, 4210 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2131, 2164 |
| BanI | GGYRCC | 2 cut(s) | 1660, 3811 |
| BanII | GRGCYC | 1 cut(s) | 1683 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2165, 2197 |
| BauI | CACGAG | 2 cut(s) | 987, 2618 |
| BbsI | GAAGAC | 3 cut(s) | 596, 2707, 3408 |
| Bbv12I | GWGCWC | 3 cut(s) | 1683, 1750, 4210 |
| BbvCI | CCTCAGC | 1 cut(s) | 3870 |
| BceAI | ACGGC | 6 cut(s) | 468, 1723, 1802, 1974, 2047, 4231 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2317, 2351, 2580, 2614 |
| BciT130I | CCWGG | 6 cut(s) | 1259, 1575, 2549, 3207, 4152, 4234 |
| BciVI | GTATCC | 5 cut(s) | 1090, 1287, 1557, 2269, 4419 |
| BclI | TGATCA | 1 cut(s) | 1867 |
| BcnI | CCSGG | 8 cut(s) | 1293, 1337, 1623, 2347, 2829, 3035, 3412, 4011 |
| BcoDI | GTCTC | 6 cut(s) | 78, 509, 1412, 1431, 1459, 3902 |
| BfmI | CTRYAG | 5 cut(s) | 91, 1665, 2922, 2945, 3081 |
| BfoI | RGCGCY | 1 cut(s) | 1343 |
| BfrI | CTTAAG | 2 cut(s) | 2465, 2735 |
| BfuAI | ACCTGC | 2 cut(s) | 1672, 2032 |
| BfuI | GTATCC | 5 cut(s) | 1090, 1287, 1557, 2269, 4419 |
| BmcAI | AGTACT | 4 cut(s) | 1161, 1368, 2792, 3699 |
| Bme18I | GGWCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 819, 3164 |
| BmeT110I | CYCGRG | 5 cut(s) | 75, 651, 1049, 1682, 1694 |
| BmgBI | CACGTC | 3 cut(s) | 44, 1425, 3599 |
| BmgT120I | GGNCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| BmiI | GGNNCC | 5 cut(s) | 149, 1662, 2991, 3813, 4083 |
| BmrI | ACTGGG | 2 cut(s) | 849, 1425 |
| BmsI | GCATC | 5 cut(s) | 286, 1177, 2559, 3810, 3856 |
| BmtI | GCTAGC | 1 cut(s) | 738 |
| BmuI | ACTGGG | 2 cut(s) | 849, 1425 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3967 |
| BpiI | GAAGAC | 3 cut(s) | 596, 2707, 3408 |
| BpmI | CTGGAG | 2 cut(s) | 975, 1035 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1137, 3870 |
| Bpu14I | TTCGAA | 2 cut(s) | 562, 2523 |
| BpuEI | CTTGAG | 3 cut(s) | 647, 3722, 4163 |
| BpuMI | CCSGG | 8 cut(s) | 1293, 1337, 1623, 2347, 2829, 3035, 3412, 4011 |
| BsaAI | YACGTR | 4 cut(s) | 551, 920, 2239, 4166 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3150, 3579 |
| BsaHI | GRCGYC | 1 cut(s) | 2853 |
| BsaI | GGTCTC | 1 cut(s) | 1459 |
| BsaWI | WCCGGW | 5 cut(s) | 184, 1965, 2246, 4056, 4279 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 984, 1014, 1737, 1767, 2247, 2277 |
| Bse118I | RCCGGY | 4 cut(s) | 683, 755, 4056, 4279 |
| Bse1I | ACTGG | 8 cut(s) | 844, 958, 1018, 1105, 1325, 1431, 3482, 4389 |
| Bse3DI | GCAATG | 1 cut(s) | 855 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3150, 3579 |
| BseAI | TCCGGA | 2 cut(s) | 184, 1965 |
| BseBI | CCWGG | 6 cut(s) | 1259, 1575, 2549, 3207, 4152, 4234 |
| BseGI | GGATG | 8 cut(s) | 517, 2217, 2790, 3097, 3151, 3178, 3198, 3202 |
| BseJI | GATNNNNATC | 2 cut(s) | 3150, 3579 |
| BseMI | GCAATG | 1 cut(s) | 855 |
| BseMII | CTCAG | 7 cut(s) | 42, 65, 122, 183, 1888, 3861, 4205 |
| BseNI | ACTGG | 8 cut(s) | 844, 958, 1018, 1105, 1325, 1431, 3482, 4389 |
| BseRI | GAGGAG | 5 cut(s) | 371, 846, 1712, 2141, 2791 |
| BseSI | GKGCMC | 2 cut(s) | 807, 4210 |
| BseX3I | CGGCCG | 1 cut(s) | 2060 |
| BseYI | CCCAGC | 1 cut(s) | 968 |
| BsgI | GTGCAG | 3 cut(s) | 386, 1029, 3315 |
| Bsh1236I | CGCG | 3 cut(s) | 963, 1484, 1972 |
| Bsh1285I | CGRYCG | 5 cut(s) | 869, 1913, 2063, 2661, 3504 |
| BshFI | GGCC | 4 cut(s) | 1142, 2062, 2345, 2547 |
| BshNI | GGYRCC | 2 cut(s) | 1660, 3811 |
| BshTI | ACCGGT | 2 cut(s) | 4056, 4279 |
| BsiEI | CGRYCG | 5 cut(s) | 869, 1913, 2063, 2661, 3504 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1683, 1750, 4210 |
| BsiHKCI | CYCGRG | 5 cut(s) | 75, 651, 1049, 1682, 1694 |
| BslFI | GGGAC | 3 cut(s) | 807, 2565, 3389 |
| BsmAI | GTCTC | 6 cut(s) | 78, 509, 1412, 1431, 1459, 3902 |
| BsmBI | CGTCTC | 1 cut(s) | 1431 |
| BsmFI | GGGAC | 3 cut(s) | 807, 2565, 3389 |
| BsmI | GAATGC | 1 cut(s) | 1029 |
| BsnI | GGCC | 4 cut(s) | 1142, 2062, 2345, 2547 |
| Bso31I | GGTCTC | 1 cut(s) | 1459 |
| BsoBI | CYCGRG | 5 cut(s) | 75, 651, 1049, 1682, 1694 |
| Bsp119I | TTCGAA | 2 cut(s) | 562, 2523 |
| Bsp1286I | GDGCHC | 4 cut(s) | 807, 1683, 1750, 4210 |
| Bsp13I | TCCGGA | 2 cut(s) | 184, 1965 |
| Bsp1407I | TGTACA | 1 cut(s) | 3222 |
| Bsp19I | CCATGG | 1 cut(s) | 4357 |
| BspANI | GGCC | 4 cut(s) | 1142, 2062, 2345, 2547 |
| BspCNI | CTCAG | 7 cut(s) | 41, 64, 123, 184, 1887, 3862, 4204 |
| BspEI | TCCGGA | 2 cut(s) | 184, 1965 |
| BspFNI | CGCG | 3 cut(s) | 963, 1484, 1972 |
| BspHI | TCATGA | 1 cut(s) | 2043 |
| BspLI | GGNNCC | 5 cut(s) | 149, 1662, 2991, 3813, 4083 |
| BspMAI | CTGCAG | 3 cut(s) | 1669, 2949, 3085 |
| BspMI | ACCTGC | 2 cut(s) | 1672, 2032 |
| BspOI | GCTAGC | 1 cut(s) | 738 |
| BspPI | GGATC | 7 cut(s) | 117, 1229, 2046, 2261, 3237, 3575, 3582 |
| BspQI | GCTCTTC | 1 cut(s) | 3257 |
| BspT104I | TTCGAA | 2 cut(s) | 562, 2523 |
| BspT107I | GGYRCC | 2 cut(s) | 1660, 3811 |
| BspTI | CTTAAG | 2 cut(s) | 2465, 2735 |
| BspTNI | GGTCTC | 1 cut(s) | 1459 |
| BsrBI | CCGCTC | 3 cut(s) | 124, 1357, 1708 |
| BsrDI | GCAATG | 1 cut(s) | 855 |
| BsrFI | RCCGGY | 4 cut(s) | 683, 755, 4056, 4279 |
| BsrGI | TGTACA | 1 cut(s) | 3222 |
| BsrI | ACTGG | 8 cut(s) | 844, 958, 1018, 1105, 1325, 1431, 3482, 4389 |
| BssAI | RCCGGY | 4 cut(s) | 683, 755, 4056, 4279 |
| BssNAI | GTATAC | 3 cut(s) | 2110, 4169, 4289 |
| BssNI | GRCGYC | 1 cut(s) | 2853 |
| BssSI | CACGAG | 2 cut(s) | 987, 2618 |
| BssT1I | CCWWGG | 3 cut(s) | 1456, 1847, 4357 |
| Bst1107I | GTATAC | 3 cut(s) | 2110, 4169, 4289 |
| Bst2BI | CACGAG | 2 cut(s) | 987, 2618 |
| Bst2UI | CCWGG | 6 cut(s) | 1259, 1575, 2549, 3207, 4152, 4234 |
| Bst4CI | ACNGT | 7 cut(s) | 671, 895, 1352, 2122, 3107, 3434, 3788 |
| Bst6I | CTCTTC | 4 cut(s) | 991, 1323, 2575, 3257 |
| BstACI | GRCGYC | 1 cut(s) | 2853 |
| BstAFI | CTTAAG | 2 cut(s) | 2465, 2735 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2027 |
| BstAUI | TGTACA | 1 cut(s) | 3222 |
| BstBAI | YACGTR | 4 cut(s) | 551, 920, 2239, 4166 |
| BstBI | TTCGAA | 2 cut(s) | 562, 2523 |
| BstC8I | GCNNGC | 6 cut(s) | 246, 736, 1647, 1808, 2898, 3081 |
| BstDSI | CCRYGG | 2 cut(s) | 1739, 4357 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4044 |
| BstF5I | GGATG | 8 cut(s) | 517, 2217, 2790, 3097, 3151, 3178, 3198, 3202 |
| BstFNI | CGCG | 3 cut(s) | 963, 1484, 1972 |
| BstH2I | RGCGCY | 1 cut(s) | 1343 |
| BstHHI | GCGC | 3 cut(s) | 963, 1342, 1486 |
| BstMAI | GTCTC | 6 cut(s) | 78, 509, 1412, 1431, 1459, 3902 |
| BstMCI | CGRYCG | 5 cut(s) | 869, 1913, 2063, 2661, 3504 |
| BstNI | CCWGG | 6 cut(s) | 1259, 1575, 2549, 3207, 4152, 4234 |
| BstNSI | RCATGY | 4 cut(s) | 69, 248, 2669, 3723 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3967 |
| BstSFI | CTRYAG | 5 cut(s) | 91, 1665, 2922, 2945, 3081 |
| BstSLI | GKGCMC | 2 cut(s) | 807, 4210 |
| BstUI | CGCG | 3 cut(s) | 963, 1484, 1972 |
| BstV2I | GAAGAC | 3 cut(s) | 596, 2707, 3408 |
| BstX2I | RGATCY | 4 cut(s) | 1221, 2038, 3229, 3580 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2555, 3858 |
| BstYI | RGATCY | 4 cut(s) | 1221, 2038, 3229, 3580 |
| BstZ17I | GTATAC | 3 cut(s) | 2110, 4169, 4289 |
| BstZI | CGGCCG | 1 cut(s) | 2060 |
| BsuI | GTATCC | 5 cut(s) | 1090, 1287, 1557, 2269, 4419 |
| BsuRI | GGCC | 4 cut(s) | 1142, 2062, 2345, 2547 |
| BtgI | CCRYGG | 2 cut(s) | 1739, 4357 |
| BtgZI | GCGATG | 3 cut(s) | 1719, 3077, 3282 |
| BtrI | CACGTC | 3 cut(s) | 44, 1425, 3599 |
| BtsCI | GGATG | 8 cut(s) | 517, 2217, 2790, 3097, 3151, 3178, 3198, 3202 |
| BtsI | GCAGTG | 3 cut(s) | 1640, 1841, 4134 |
| BtsIMutI | CAGTG | 7 cut(s) | 785, 885, 1640, 1841, 1882, 3489, 4134 |
| BveI | ACCTGC | 2 cut(s) | 1672, 2032 |
| Cac8I | GCNNGC | 6 cut(s) | 246, 736, 1647, 1808, 2898, 3081 |
| CaiI | CAGNNNCTG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 2043 |
| CfoI | GCGC | 3 cut(s) | 963, 1342, 1486 |
| Cfr10I | RCCGGY | 4 cut(s) | 683, 755, 4056, 4279 |
| Cfr13I | GGNCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| CseI | GACGC | 5 cut(s) | 311, 1978, 2546, 2861, 2966 |
| CsiI | ACCWGGT | 1 cut(s) | 1257 |
| CspAI | ACCGGT | 2 cut(s) | 4056, 4279 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2103, 2138 |
| DraI | TTTAAA | 2 cut(s) | 2763, 2940 |
| DraIII | CACNNNGTG | 1 cut(s) | 3668 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3881 |
| DriI | GACNNNNNGTC | 2 cut(s) | 819, 3164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3881 |
| EaeI | YGGCCR | 2 cut(s) | 2060, 2343 |
| EagI | CGGCCG | 1 cut(s) | 2060 |
| Eam1104I | CTCTTC | 4 cut(s) | 991, 1323, 2575, 3257 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 819, 3164 |
| EarI | CTCTTC | 4 cut(s) | 991, 1323, 2575, 3257 |
| EciI | GGCGGA | 3 cut(s) | 670, 1375, 3332 |
| Ecl136II | GAGCTC | 1 cut(s) | 1681 |
| EclXI | CGGCCG | 1 cut(s) | 2060 |
| Eco130I | CCWWGG | 3 cut(s) | 1456, 1847, 4357 |
| Eco147I | AGGCCT | 1 cut(s) | 1142 |
| Eco24I | GRGCYC | 1 cut(s) | 1683 |
| Eco31I | GGTCTC | 1 cut(s) | 1459 |
| Eco32I | GATATC | 1 cut(s) | 1838 |
| Eco47I | GGWCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| Eco52I | CGGCCG | 1 cut(s) | 2060 |
| Eco53kI | GAGCTC | 1 cut(s) | 1681 |
| Eco57I | CTGAAG | 4 cut(s) | 173, 608, 1098, 2526 |
| Eco88I | CYCGRG | 5 cut(s) | 75, 651, 1049, 1682, 1694 |
| EcoICRI | GAGCTC | 1 cut(s) | 1681 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4044 |
| EcoO109I | RGGNCCY | 2 cut(s) | 980, 3890 |
| EcoRI | GAATTC | 2 cut(s) | 558, 4001 |
| EcoRII | CCWGG | 6 cut(s) | 1257, 1573, 2547, 3205, 4150, 4232 |
| EcoRV | GATATC | 1 cut(s) | 1838 |
| EcoT14I | CCWWGG | 3 cut(s) | 1456, 1847, 4357 |
| EcoT38I | GRGCYC | 1 cut(s) | 1683 |
| ErhI | CCWWGG | 3 cut(s) | 1456, 1847, 4357 |
| Esp3I | CGTCTC | 1 cut(s) | 1431 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2127, 2159, 3479, 3511 |
| FaqI | GGGAC | 3 cut(s) | 807, 2565, 3389 |
| FauI | CCCGC | 4 cut(s) | 117, 682, 1379, 2160 |
| FbaI | TGATCA | 1 cut(s) | 1867 |
| FblI | GTMKAC | 6 cut(s) | 1539, 2109, 3835, 3961, 4168, 4288 |
| FokI | GGATG | 8 cut(s) | 524, 2224, 2797, 3084, 3158, 3185, 3185, 3189 |
| FriOI | GRGCYC | 1 cut(s) | 1683 |
| GlaI | GCGC | 3 cut(s) | 962, 1341, 1485 |
| GsaI | CCCAGC | 1 cut(s) | 972 |
| GsuI | CTGGAG | 2 cut(s) | 975, 1035 |
| HaeII | RGCGCY | 1 cut(s) | 1343 |
| HaeIII | GGCC | 4 cut(s) | 1142, 2062, 2345, 2547 |
| HgaI | GACGC | 5 cut(s) | 311, 1978, 2546, 2861, 2966 |
| HhaI | GCGC | 3 cut(s) | 963, 1342, 1486 |
| Hin1I | GRCGYC | 1 cut(s) | 2853 |
| Hin6I | GCGC | 3 cut(s) | 961, 1340, 1484 |
| HinP1I | GCGC | 3 cut(s) | 961, 1340, 1484 |
| HincII | GTYRAC | 6 cut(s) | 268, 450, 1540, 2397, 2406, 2478 |
| HindII | GTYRAC | 6 cut(s) | 268, 450, 1540, 2397, 2406, 2478 |
| HindIII | AAGCTT | 1 cut(s) | 230 |
| Hpy99I | CGWCG | 6 cut(s) | 45, 305, 1544, 1556, 2084, 2361 |
| HpyCH4III | ACNGT | 7 cut(s) | 671, 895, 1352, 2122, 3107, 3434, 3788 |
| Hsp92I | GRCGYC | 1 cut(s) | 2853 |
| HspAI | GCGC | 3 cut(s) | 961, 1340, 1484 |
| Kpn2I | TCCGGA | 2 cut(s) | 184, 1965 |
| Ksp22I | TGATCA | 1 cut(s) | 1867 |
| LguI | GCTCTTC | 1 cut(s) | 3257 |
| LmnI | GCTCC | 7 cut(s) | 683, 1588, 1745, 2128, 4087, 4252, 4317 |
| LweI | GCATC | 5 cut(s) | 286, 1177, 2559, 3810, 3856 |
| MabI | ACCWGGT | 1 cut(s) | 1257 |
| MbiI | CCGCTC | 3 cut(s) | 124, 1357, 1708 |
| MfeI | CAATTG | 1 cut(s) | 4332 |
| MflI | RGATCY | 4 cut(s) | 1221, 2038, 3229, 3580 |
| MhlI | GDGCHC | 4 cut(s) | 807, 1683, 1750, 4210 |
| MlyI | GAGTC | 6 cut(s) | 847, 1163, 1414, 1587, 2401, 2456 |
| MmeI | TCCRAC | 8 cut(s) | 1263, 2196, 3079, 3581, 3708, 4030, 4230, 4416 |
| MroI | TCCGGA | 2 cut(s) | 184, 1965 |
| MroXI | GAANNNNTTC | 5 cut(s) | 710, 1527, 1715, 1947, 3756 |
| MslI | CAYNNNNRTG | 8 cut(s) | 945, 1474, 1738, 2984, 3218, 3386, 3806, 3853 |
| MspA1I | CMGCKG | 3 cut(s) | 32, 744, 2179 |
| MspCI | CTTAAG | 2 cut(s) | 2465, 2735 |
| MunI | CAATTG | 1 cut(s) | 4332 |
| Mva1269I | GAATGC | 1 cut(s) | 1029 |
| MvaI | CCWGG | 6 cut(s) | 1259, 1575, 2549, 3207, 4152, 4234 |
| MvnI | CGCG | 3 cut(s) | 963, 1484, 1972 |
| NciI | CCSGG | 8 cut(s) | 1293, 1337, 1623, 2347, 2829, 3035, 3412, 4011 |
| NcoI | CCATGG | 1 cut(s) | 4357 |
| NheI | GCTAGC | 1 cut(s) | 734 |
| NlaIV | GGNNCC | 5 cut(s) | 149, 1662, 2991, 3813, 4083 |
| NmeAIII | GCCGAG | 1 cut(s) | 130 |
| NmuCI | GTSAC | 7 cut(s) | 1261, 1819, 2314, 2435, 3594, 3668, 4261 |
| NspI | RCATGY | 4 cut(s) | 69, 248, 2669, 3723 |
| NspV | TTCGAA | 2 cut(s) | 562, 2523 |
| OliI | CACNNNNGTG | 2 cut(s) | 1474, 3853 |
| PaeI | GCATGC | 1 cut(s) | 248 |
| PaeR7I | CTCGAG | 3 cut(s) | 75, 1049, 1694 |
| PagI | TCATGA | 1 cut(s) | 2043 |
| PaqCI | CACCTGC | 2 cut(s) | 1672, 2032 |
| PceI | AGGCCT | 1 cut(s) | 1142 |
| PciSI | GCTCTTC | 1 cut(s) | 3257 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 871, 1548, 1983, 2103, 2520, 3583 |
| PctI | GAATGC | 1 cut(s) | 1029 |
| PdmI | GAANNNNTTC | 5 cut(s) | 710, 1527, 1715, 1947, 3756 |
| PflFI | GACNNNGTC | 2 cut(s) | 445, 3840 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 351, 1657 |
| PinAI | ACCGGT | 2 cut(s) | 4056, 4279 |
| Ple19I | CGATCG | 2 cut(s) | 1913, 3504 |
| PleI | GAGTC | 6 cut(s) | 847, 1162, 1413, 1586, 2401, 2455 |
| PpsI | GAGTC | 6 cut(s) | 847, 1162, 1413, 1586, 2401, 2455 |
| Ppu21I | YACGTR | 4 cut(s) | 551, 920, 2239, 4166 |
| PpuMI | RGGWCCY | 2 cut(s) | 980, 3890 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3967 |
| Psp124BI | GAGCTC | 1 cut(s) | 1683 |
| Psp1406I | AACGTT | 1 cut(s) | 328 |
| Psp5II | RGGWCCY | 2 cut(s) | 980, 3890 |
| Psp6I | CCWGG | 6 cut(s) | 1257, 1573, 2547, 3205, 4150, 4232 |
| PspFI | CCCAGC | 1 cut(s) | 968 |
| PspGI | CCWGG | 6 cut(s) | 1257, 1573, 2547, 3205, 4150, 4232 |
| PspN4I | GGNNCC | 5 cut(s) | 149, 1662, 2991, 3813, 4083 |
| PspPI | GGNCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| PspPPI | RGGWCCY | 2 cut(s) | 980, 3890 |
| PspXI | VCTCGAGB | 2 cut(s) | 1049, 1694 |
| PstI | CTGCAG | 3 cut(s) | 1669, 2949, 3085 |
| PstNI | CAGNNNCTG | 1 cut(s) | 35 |
| PsuI | RGATCY | 4 cut(s) | 1221, 2038, 3229, 3580 |
| PsyI | GACNNNGTC | 2 cut(s) | 445, 3840 |
| PvuI | CGATCG | 2 cut(s) | 1913, 3504 |
| PvuII | CAGCTG | 2 cut(s) | 32, 2179 |
| RseI | CAYNNNNRTG | 8 cut(s) | 945, 1474, 1738, 2984, 3218, 3386, 3806, 3853 |
| SacI | GAGCTC | 1 cut(s) | 1683 |
| SalI | GTCGAC | 1 cut(s) | 1538 |
| SapI | GCTCTTC | 1 cut(s) | 3257 |
| Sau96I | GGNCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| ScaI | AGTACT | 4 cut(s) | 1161, 1368, 2792, 3699 |
| SchI | GAGTC | 6 cut(s) | 847, 1163, 1414, 1587, 2401, 2456 |
| SduI | GDGCHC | 4 cut(s) | 807, 1683, 1750, 4210 |
| SexAI | ACCWGGT | 1 cut(s) | 1257 |
| SfaNI | GCATC | 5 cut(s) | 286, 1177, 2559, 3810, 3856 |
| SfcI | CTRYAG | 5 cut(s) | 91, 1665, 2922, 2945, 3081 |
| Sfr274I | CTCGAG | 3 cut(s) | 75, 1049, 1694 |
| SfuI | TTCGAA | 2 cut(s) | 562, 2523 |
| SgrAI | CRCCGGYG | 1 cut(s) | 683 |
| SinI | GGWCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| SlaI | CTCGAG | 3 cut(s) | 75, 1049, 1694 |
| SmiI | ATTTAAAT | 1 cut(s) | 2763 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 945, 1474, 1738, 2984, 3218, 3386, 3806, 3853 |
| SmlI | CTYRAG | 8 cut(s) | 75, 626, 1049, 1694, 2465, 2735, 3701, 4142 |
| SmoI | CTYRAG | 8 cut(s) | 75, 626, 1049, 1694, 2465, 2735, 3701, 4142 |
| SphI | GCATGC | 1 cut(s) | 248 |
| SseBI | AGGCCT | 1 cut(s) | 1142 |
| SspI | AATATT | 1 cut(s) | 3094 |
| SstI | GAGCTC | 1 cut(s) | 1683 |
| StuI | AGGCCT | 1 cut(s) | 1142 |
| StyI | CCWWGG | 3 cut(s) | 1456, 1847, 4357 |
| SwaI | ATTTAAAT | 1 cut(s) | 2763 |
| TaaI | ACNGT | 7 cut(s) | 671, 895, 1352, 2122, 3107, 3434, 3788 |
| TaqII | GACCGA | 1 cut(s) | 3275 |
| TatI | WGTACW | 9 cut(s) | 1159, 1366, 1730, 2491, 2563, 2790, 3222, 3647, 3697 |
| TauI | GCSGC | 2 cut(s) | 1360, 1496 |
| TscAI | CASTG | 7 cut(s) | 785, 892, 1647, 1848, 1882, 3489, 4134 |
| TseFI | GTSAC | 7 cut(s) | 1261, 1819, 2314, 2435, 3594, 3668, 4261 |
| Tsp45I | GTSAC | 7 cut(s) | 1261, 1819, 2314, 2435, 3594, 3668, 4261 |
| TspRI | CASTG | 7 cut(s) | 785, 892, 1647, 1848, 1882, 3489, 4134 |
| Tth111I | GACNNNGTC | 2 cut(s) | 445, 3840 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 351, 1657 |
| Vha464I | CTTAAG | 2 cut(s) | 2465, 2735 |
| VneI | GTGCAC | 1 cut(s) | 4206 |
| VpaK11BI | GGWCC | 5 cut(s) | 980, 3874, 3890, 4097, 4277 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4044 |
| XbaI | TCTAGA | 2 cut(s) | 427, 1150 |
| XceI | RCATGY | 4 cut(s) | 69, 248, 2669, 3723 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1244, 4381 |
| XhoI | CTCGAG | 3 cut(s) | 75, 1049, 1694 |
| XmiI | GTMKAC | 6 cut(s) | 1539, 2109, 3835, 3961, 4168, 4288 |
| XmnI | GAANNNNTTC | 5 cut(s) | 710, 1527, 1715, 1947, 3756 |
| ZrmI | AGTACT | 4 cut(s) | 1161, 1368, 2792, 3699 |