Rw1G009150

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000094
Physical Location & Seq
Reverse (-)
20138374 .. 20138997
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009150.1

Sequence Viewer

Length: 624 bp
ATGGCACCATATGAGGCTCTTTATGGTAGGCCATGTAGGACTCCTGTCTGTTGGGCGGAAGTGGGAGATAGAGAATTCTTGGGTCCCGAGATCGTTCAGGAGACTACCAAGAAGATCTCTATTATCCGAGACAGGATCCGAACGGCACAGAGTAGGCAGAAGAGCTATGCTGATTTGAAGAGGAGACCGGTTGAGTTTGAGGTTGGTGACCATGTGTTCTTGAAGGTCTCACCCATGAAGGGTGTGGTGAGGTTTGGCAAGAAGGGAAAGTTGGCACCGAGGTATGTTGGACCTTTTGAGATTTTAGAGAGGGTCGGAGATTTGGCTTATCGGCTTGCTTTACCTCCTAGTATGTCTGGTGTACACAATGTCTTCCATGTGTCCATGCTGCGGAAGTATATCCAGGATGAGTCACATGTGATTGATTATGGTACTATTGAGGTGAATGAGGATGTGACCTTTGTTGTCGAACCTGTTCGTATCTTGGATAGGTCGACAAAGAGGCTTCGTAGGAAGGAGGTGGACTTGGTCAAGGTGTTGTGGAGTCACCATGATGAGGGTGATGCATCGTGGGAGCTAGAGTCGGACATGAGGACTAGGTATCCACAGCTTTTTGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

24.03

Weight (kDa)

8.8

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 69 - 133 3.2e-29 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 274
AccI GTMKAC 1 cut(s) 494
AciI CCGC 2 cut(s) 56, 391
AclWI GGATC 2 cut(s) 130, 143
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 2 cut(s) 363, 433
AfiI CCNNNNNNNGG 3 cut(s) 239, 390, 556
AflIII ACRYGT 1 cut(s) 415
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 2 cut(s) 178, 223
AjnI CCWGG 1 cut(s) 402
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 165, 577, 610
AluI AGCT 3 cut(s) 165, 577, 610
Alw26I GTCTC 4 cut(s) 95, 123, 178, 232
AlwI GGATC 2 cut(s) 130, 143
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 74
AsiGI ACCGGT 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 83, 290
AsuHPI GGTGA 6 cut(s) 218, 222, 259, 454, 539, 572
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 2 cut(s) 83, 290
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 2 cut(s) 4, 274
BbsI GAAGAC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 375
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 1 cut(s) 612
BcoDI GTCTC 4 cut(s) 95, 123, 178, 232
BfaI CTAG 3 cut(s) 348, 578, 597
BfuI GTATCC 1 cut(s) 612
BglII AGATCT 1 cut(s) 114
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 2 cut(s) 83, 290
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 83, 290
BmiI GGNNCC 5 cut(s) 6, 84, 85, 137, 276
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 553, 575
BoxI GACNNNNGTC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 364
BsaI GGTCTC 2 cut(s) 178, 232
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 566, 596
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 390, 556
Bse118I RCCGGY 1 cut(s) 187
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 412, 457
BseLI CCNNNNNNNGG 3 cut(s) 239, 390, 556
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 375
BshFI GGCC 1 cut(s) 31
BshNI GGYRCC 2 cut(s) 4, 274
BshTI ACCGGT 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 239, 390, 556
BsmAI GTCTC 4 cut(s) 95, 123, 178, 232
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 2 cut(s) 178, 232
BsoBI CYCGRG 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 90, 114, 135
BspACI CCGC 2 cut(s) 56, 391
BspANI GGCC 1 cut(s) 31
BspLI GGNNCC 5 cut(s) 6, 84, 85, 137, 276
BspPI GGATC 2 cut(s) 130, 143
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 2 cut(s) 4, 274
BspTNI GGTCTC 2 cut(s) 178, 232
BsrFI RCCGGY 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 3 cut(s) 90, 114, 135
Bst2UI CCWGG 1 cut(s) 404
Bst6I CTCTTC 2 cut(s) 155, 173
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 2 cut(s) 412, 457
BstKTI GATC 3 cut(s) 93, 117, 138
BstMAI GTCTC 4 cut(s) 95, 123, 178, 232
BstMBI GATC 3 cut(s) 90, 114, 135
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 419
BstPAI GACNNNNGTC 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 2 cut(s) 114, 135
BstYI RGATCY 2 cut(s) 114, 135
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 412, 457
Cac8I GCNNGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 83, 290
Csp6I GTAC 2 cut(s) 362, 432
CspAI ACCGGT 1 cut(s) 187
CviAII CATG 8 cut(s) 33, 212, 235, 377, 385, 416, 551, 589
CviJI RGCY 8 cut(s) 17, 31, 165, 326, 334, 505, 577, 610
CviKI_1 RGCY 8 cut(s) 17, 31, 165, 326, 334, 505, 577, 610
CviQI GTAC 2 cut(s) 362, 432
DpnI GATC 3 cut(s) 92, 116, 137
DpnII GATC 3 cut(s) 90, 114, 135
Eam1104I CTCTTC 2 cut(s) 155, 173
EarI CTCTTC 2 cut(s) 155, 173
EciI GGCGGA 1 cut(s) 71
Eco31I GGTCTC 2 cut(s) 178, 232
Eco47I GGWCC 2 cut(s) 83, 290
Eco88I CYCGRG 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 568
FaeI CATG 8 cut(s) 36, 215, 238, 380, 388, 419, 554, 592
FaqI GGGAC 1 cut(s) 69
FatI CATG 8 cut(s) 32, 211, 234, 376, 384, 415, 550, 588
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 2 cut(s) 419, 464
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 3 cut(s) 348, 578, 597
GluI GCNGC 1 cut(s) 389
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 188
Hin1II CATG 8 cut(s) 36, 215, 238, 380, 388, 419, 554, 592
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 4 cut(s) 40, 410, 544, 581
HpaII CCGG 1 cut(s) 188
HphI GGTGA 6 cut(s) 218, 222, 259, 454, 539, 572
Hpy166II GTNNAC 4 cut(s) 362, 364, 495, 523
Hpy188I TCNGA 4 cut(s) 128, 140, 317, 586
Hpy188III TCNNGA 3 cut(s) 86, 98, 220
Hpy8I GTNNAC 4 cut(s) 362, 364, 495, 523
HpyAV CCTTC 4 cut(s) 217, 232, 256, 508
HpyCH4V TGCA 1 cut(s) 566
Hsp92II CATG 8 cut(s) 36, 215, 238, 380, 388, 419, 554, 592
KflI GGGWCCC 1 cut(s) 83
Kzo9I GATC 3 cut(s) 90, 114, 135
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 574
LpnPI CCDG 8 cut(s) 57, 83, 118, 201, 342, 389, 416, 486
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 2 cut(s) 553, 575
MaeI CTAG 3 cut(s) 348, 578, 597
MaeIII GTNAC 4 cut(s) 206, 411, 454, 545
MalI GATC 3 cut(s) 92, 116, 137
MboI GATC 3 cut(s) 90, 114, 135
MboII GAAGA 4 cut(s) 124, 172, 190, 364
MflI RGATCY 2 cut(s) 114, 135
MluCI AATT 1 cut(s) 74
MlyI GAGTC 4 cut(s) 34, 419, 553, 590
MmeI TCCRAC 3 cut(s) 268, 295, 564
Mph1103I ATGCAT 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 10
NdeII GATC 3 cut(s) 90, 114, 135
NlaIII CATG 8 cut(s) 36, 215, 238, 380, 388, 419, 554, 592
NlaIV GGNNCC 5 cut(s) 6, 84, 85, 137, 276
NmuCI GTSAC 4 cut(s) 206, 411, 454, 545
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 419
PciI ACATGT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 474
PflFI GACNNNGTC 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 402
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 1 cut(s) 390
PleI GAGTC 4 cut(s) 34, 418, 552, 589
PpsI GAGTC 4 cut(s) 34, 418, 552, 589
PpuMI RGGWCCY 1 cut(s) 83
PscI ACATGT 1 cut(s) 415
PshAI GACNNNNGTC 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 402
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 5 cut(s) 6, 84, 85, 137, 276
PspPI GGNCC 2 cut(s) 83, 290
PspPPI RGGWCCY 1 cut(s) 83
PsuI RGATCY 2 cut(s) 114, 135
PsyI GACNNNGTC 1 cut(s) 527
RsaI GTAC 2 cut(s) 363, 433
RsaNI GTAC 2 cut(s) 362, 432
RseI CAYNNNNRTG 1 cut(s) 552
SalI GTCGAC 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 155
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 3 cut(s) 90, 114, 135
Sau96I GGNCC 2 cut(s) 83, 290
SchI GAGTC 4 cut(s) 34, 419, 553, 590
ScrFI CCNGG 1 cut(s) 404
SfaNI GCATC 2 cut(s) 553, 575
SinI GGWCC 2 cut(s) 83, 290
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 1 cut(s) 74
SsiI CCGC 2 cut(s) 56, 391
SspMI CTAG 3 cut(s) 348, 578, 597
StyD4I CCNGG 1 cut(s) 402
TaqI TCGA 2 cut(s) 468, 494
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 361
TseFI GTSAC 4 cut(s) 206, 411, 454, 545
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 4 cut(s) 206, 411, 454, 545
TspDTI ATGAA 1 cut(s) 251
Tth111I GACNNNGTC 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 83, 290
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 3 cut(s) 348, 578, 597
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.