Rroxscaffold_5G00338590

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000094
Physical Location & Seq
Forward (+)
6784429 .. 6797238
12810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338590.1

Sequence Viewer

Length: 921 bp
ATGGGCAATACCGCCGGTTGGGTGCTTTTTGAGTGTGGACAGTTGGGTCACTTCAAGAGGACTGCCCCTATTGGCCCAAAGAGTCTCATCTACCCCTTTCCGAGCAACTGGTCACCATCGCCGGGTACTTCTTCTAGTGGTGCCGGAGCTTCCACTAGCGGTGGTCGTACTAGTTCGGCCTCTCGTGGTAGTTCTCGGCGAGTAGGGGCCGAGAGGACGTCCCGCGACTCATGCCGCATTGCATGCTATGACTCGGCAGAGGGTCGTGACTCACCTAATGTTATTATCGGTACGTTGTCCGTTTTTGATCAGCCCGCTTATACTTTAATTGATCCCGGTGCTTCGCATTCTTTTATGTCAAGTAGATTTGCATGTTTTGCCACCGTACCATCGTCGCCCCTTATTGGCGAGTGGTATGTGTCTTTACCTCGCGGGGGATCATTAAAAATAGAGTGGGTCTTTAAAGATTGTAATGTTTGGGTTAATGGTGTTAACTTGGAGGTTGATCTAATCCCCTGGGATCTTGTGGAATTCGATGTGATCTTGGGAATGGAGTTTTTAGCAAGTCATCGAGCCAATATTGATTGTTTTCGCAAGGTTGTAGTGTTTCAAAGTCCAGGGAAGCCGATAGTTTCTTTTCAAGGAGATCGAAATGTACTTTCTTCCCGTTTAATTTCGGCCTTAACGGCCGAGAAGCTTTTAAGTAAGGGTTGTCGTGCCTACTTGGCTCACATGGTGGATAACCGTAGGGAGGAGCCGAGTATTGATGAGATACCCGCTTGTGCGGAAATTTCCGATGTATTTCCGGATGAATTACCTGGTTTACCCCCCGTAAGAGAGATAGATTTTGCTATCGATTTGATTCCCGGCACAACACCTATATATTTCAAGCTCCTTATCGGATGGCTCCCGCTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

306

Amino Acids

33.28

Weight (kDa)

5.65

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 79 - 204 9e-28 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 45
AatII GACGTC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 2 cut(s) 225, 432
AccIII TCCGGA 1 cut(s) 805
AciI CCGC 9 cut(s) 12, 159, 223, 235, 315, 432, 777, 785, 911
AclWI GGATC 3 cut(s) 326, 445, 528
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 2 cut(s) 530, 789
AcyI GRCGYC 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 736
AfaI GTAC 5 cut(s) 127, 169, 292, 387, 657
AfiI CCNNNNNNNGG 5 cut(s) 18, 122, 404, 434, 751
AgsI TTSAA 4 cut(s) 55, 611, 641, 889
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 3 cut(s) 515, 616, 817
AluBI AGCT 3 cut(s) 149, 697, 892
AluI AGCT 3 cut(s) 149, 697, 892
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 326, 445, 528
Aor13HI TCCGGA 1 cut(s) 805
AoxI GGCC 5 cut(s) 73, 177, 207, 678, 687
ApoI RAATTY 2 cut(s) 530, 789
AspS9I GGNCC 2 cut(s) 74, 207
AsuC2I CCSGG 3 cut(s) 123, 336, 867
AsuHPI GGTGA 2 cut(s) 105, 264
BanI GGYRCC 1 cut(s) 140
BauI CACGAG 1 cut(s) 183
BccI CCATC 3 cut(s) 124, 397, 897
BceAI ACGGC 1 cut(s) 702
BciT130I CCWGG 3 cut(s) 517, 618, 819
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 3 cut(s) 123, 336, 867
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 3 cut(s) 135, 156, 171
BglI GCCNNNNNGGC 2 cut(s) 686, 725
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 6 cut(s) 123, 336, 517, 618, 819, 867
BmgT120I GGNCC 2 cut(s) 74, 207
BmiI GGNNCC 4 cut(s) 142, 208, 756, 908
BmrFI CCNGG 6 cut(s) 123, 336, 517, 618, 819, 867
BpuMI CCSGG 3 cut(s) 123, 336, 867
Bsa29I ATCGAT 1 cut(s) 855
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 515, 516, 617
BsaWI WCCGGW 1 cut(s) 805
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 122, 404, 434, 751
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 805
BseBI CCWGG 3 cut(s) 517, 618, 819
BseCI ATCGAT 1 cut(s) 855
BseDI CCNNGG 3 cut(s) 515, 516, 617
BseGI GGATG 2 cut(s) 814, 908
BseLI CCNNNNNNNGG 5 cut(s) 18, 122, 404, 434, 751
BseMI GCAATG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 767
BseX3I CGGCCG 1 cut(s) 687
Bsh1236I CGCG 2 cut(s) 225, 432
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 5 cut(s) 75, 179, 209, 680, 689
BshNI GGYRCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 855
BsiEI CGRYCG 1 cut(s) 690
BsiSI CCGG 6 cut(s) 15, 122, 144, 336, 806, 867
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 5 cut(s) 18, 122, 404, 434, 751
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 5 cut(s) 75, 179, 209, 680, 689
Bsp13I TCCGGA 1 cut(s) 805
Bsp143I GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
BspACI CCGC 9 cut(s) 12, 159, 223, 235, 315, 432, 777, 785, 911
BspANI GGCC 5 cut(s) 75, 179, 209, 680, 689
BspDI ATCGAT 1 cut(s) 855
BspEI TCCGGA 1 cut(s) 805
BspFNI CGCG 2 cut(s) 225, 432
BspLI GGNNCC 4 cut(s) 142, 208, 756, 908
BspPI GGATC 3 cut(s) 326, 445, 528
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 515, 516, 617
BssMI GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 517, 618, 819
Bst4CI ACNGT 3 cut(s) 42, 385, 746
BstACI GRCGYC 1 cut(s) 218
BstAPI GCANNNNNTGC 2 cut(s) 243, 377
BstC8I GCNNGC 2 cut(s) 244, 315
BstEII GGTNACC 1 cut(s) 111
BstF5I GGATG 2 cut(s) 814, 908
BstFNI CGCG 2 cut(s) 225, 432
BstKTI GATC 7 cut(s) 310, 334, 440, 508, 523, 543, 649
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 5 cut(s) 231, 243, 377, 686, 725
BstNI CCWGG 3 cut(s) 517, 618, 819
BstNSI RCATGY 2 cut(s) 246, 375
BstPI GGTNACC 1 cut(s) 111
BstSCI CCNGG 6 cut(s) 121, 334, 515, 616, 817, 865
BstUI CGCG 2 cut(s) 225, 432
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BstZI CGGCCG 1 cut(s) 687
Bsu15I ATCGAT 1 cut(s) 855
BsuRI GGCC 5 cut(s) 75, 179, 209, 680, 689
BsuTUI ATCGAT 1 cut(s) 855
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 814, 908
Cac8I GCNNGC 2 cut(s) 244, 315
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 74, 207
ClaI ATCGAT 1 cut(s) 855
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 5 cut(s) 126, 168, 291, 386, 656
CviAII CATG 4 cut(s) 231, 243, 372, 733
CviQI GTAC 5 cut(s) 126, 168, 291, 386, 656
DpnI GATC 7 cut(s) 309, 333, 439, 507, 522, 542, 648
DpnII GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
DraI TTTAAA 1 cut(s) 463
DraIII CACNNNGTG 1 cut(s) 736
DrdI GACNNNNNNGTC 1 cut(s) 45
DseDI GACNNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 687
EagI CGGCCG 1 cut(s) 687
EclXI CGGCCG 1 cut(s) 687
Eco52I CGGCCG 1 cut(s) 687
Eco91I GGTNACC 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 515, 616, 817
FaeI CATG 4 cut(s) 234, 246, 375, 736
FaqI GGGAC 1 cut(s) 205
FatI CATG 4 cut(s) 230, 242, 371, 732
FauI CCCGC 5 cut(s) 230, 322, 425, 784, 918
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 2 cut(s) 821, 915
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 3 cut(s) 135, 156, 171
GluI GCNGC 1 cut(s) 235
HaeIII GGCC 5 cut(s) 75, 179, 209, 680, 689
HapII CCGG 6 cut(s) 15, 122, 144, 336, 806, 867
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 4 cut(s) 234, 246, 375, 736
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 5 cut(s) 82, 227, 251, 269, 862
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 6 cut(s) 15, 122, 144, 336, 806, 867
HphI GGTGA 2 cut(s) 105, 264
Hpy166II GTNNAC 3 cut(s) 38, 493, 824
Hpy188I TCNGA 3 cut(s) 102, 796, 902
Hpy188III TCNNGA 3 cut(s) 55, 266, 806
Hpy8I GTNNAC 3 cut(s) 38, 493, 824
Hpy99I CGWCG 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 42, 385, 746
HpyCH4IV ACGT 2 cut(s) 218, 293
HpyCH4V TGCA 2 cut(s) 242, 371
HpyF10VI GCNNNNNNNGC 5 cut(s) 231, 243, 377, 686, 725
HpySE526I ACGT 2 cut(s) 218, 293
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 4 cut(s) 234, 246, 375, 736
Kpn2I TCCGGA 1 cut(s) 805
Ksp22I TGATCA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
LmnI GCTCC 4 cut(s) 146, 754, 897, 912
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 3 cut(s) 135, 156, 171
MaeII ACGT 2 cut(s) 218, 293
MaeIII GTNAC 3 cut(s) 47, 111, 266
MalI GATC 7 cut(s) 309, 333, 439, 507, 522, 542, 648
MboI GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
MboII GAAGA 2 cut(s) 123, 654
MflI RGATCY 1 cut(s) 520
MluCI AATT 5 cut(s) 327, 530, 672, 789, 812
MlyI GAGTC 4 cut(s) 91, 221, 245, 263
MnlI CCTC 7 cut(s) 51, 190, 207, 253, 438, 493, 745
MroI TCCGGA 1 cut(s) 805
MseI TTAA 8 cut(s) 326, 443, 462, 483, 492, 671, 683, 701
MspA1I CMGCKG 1 cut(s) 913
MspI CCGG 6 cut(s) 15, 122, 144, 336, 806, 867
MspR9I CCNGG 6 cut(s) 123, 336, 517, 618, 819, 867
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 3 cut(s) 517, 618, 819
MvnI CGCG 2 cut(s) 225, 432
MwoI GCNNNNNNNGC 5 cut(s) 231, 243, 377, 686, 725
NciI CCSGG 3 cut(s) 123, 336, 867
NdeII GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
NlaIII CATG 4 cut(s) 234, 246, 375, 736
NlaIV GGNNCC 4 cut(s) 142, 208, 756, 908
NmeAIII GCCGAG 5 cut(s) 175, 233, 235, 715, 783
NmuCI GTSAC 3 cut(s) 47, 111, 266
NspI RCATGY 2 cut(s) 246, 375
PaeI GCATGC 1 cut(s) 246
PasI CCCWGGG 1 cut(s) 516
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 862
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 4 cut(s) 90, 221, 245, 263
PpsI GAGTC 4 cut(s) 90, 221, 245, 263
Psp6I CCWGG 3 cut(s) 515, 616, 817
PspEI GGTNACC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 515, 616, 817
PspN4I GGNNCC 4 cut(s) 142, 208, 756, 908
PspPI GGNCC 2 cut(s) 74, 207
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 5 cut(s) 127, 169, 292, 387, 657
RsaNI GTAC 5 cut(s) 126, 168, 291, 386, 656
SaqAI TTAA 8 cut(s) 326, 443, 462, 483, 492, 671, 683, 701
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 7 cut(s) 307, 331, 437, 505, 520, 540, 646
Sau96I GGNCC 2 cut(s) 74, 207
SchI GAGTC 4 cut(s) 91, 221, 245, 263
ScrFI CCNGG 6 cut(s) 123, 336, 517, 618, 819, 867
SexAI ACCWGGT 1 cut(s) 817
SfiI GGCCNNNNNGGCC 1 cut(s) 686
SpeI ACTAGT 1 cut(s) 170
SphI GCATGC 1 cut(s) 246
Sse9I AATT 5 cut(s) 327, 530, 672, 789, 812
SsiI CCGC 9 cut(s) 12, 159, 223, 235, 315, 432, 777, 785, 911
SspI AATATT 1 cut(s) 580
SspMI CTAG 3 cut(s) 135, 156, 171
StyD4I CCNGG 6 cut(s) 121, 334, 515, 616, 817, 865
TaaI ACNGT 3 cut(s) 42, 385, 746
TaiI ACGT 2 cut(s) 221, 296
TaqI TCGA 4 cut(s) 534, 571, 649, 855
TasI AATT 5 cut(s) 327, 530, 672, 789, 812
TatI WGTACW 1 cut(s) 655
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 862
Tru1I TTAA 8 cut(s) 326, 443, 462, 483, 492, 671, 683, 701
Tru9I TTAA 8 cut(s) 326, 443, 462, 483, 492, 671, 683, 701
TseFI GTSAC 3 cut(s) 47, 111, 266
Tsp45I GTSAC 3 cut(s) 47, 111, 266
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 1 cut(s) 289
XapI RAATTY 2 cut(s) 530, 789
XceI RCATGY 2 cut(s) 246, 375
XspI CTAG 3 cut(s) 135, 156, 171
ZraI GACGTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.