transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 82 | 4.9e-19 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 310 |
| AciI | CCGC | 4 cut(s) | 30, 128, 308, 347 |
| AcsI | RAATTY | 1 cut(s) | 425 |
| AfeI | AGCGCT | 1 cut(s) | 464 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 277, 343 |
| AgsI | TTSAA | 2 cut(s) | 160, 469 |
| AleI | CACNNNNGTG | 1 cut(s) | 323 |
| AluBI | AGCT | 1 cut(s) | 287 |
| AluI | AGCT | 1 cut(s) | 287 |
| Aor51HI | AGCGCT | 1 cut(s) | 464 |
| ApeKI | GCWGC | 1 cut(s) | 284 |
| ApoI | RAATTY | 1 cut(s) | 425 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AspS9I | GGNCC | 1 cut(s) | 268 |
| AsuHPI | GGTGA | 4 cut(s) | 310, 337, 394, 530 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| BaeGI | GKGCMC | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 82 |
| BbvI | GCAGC | 1 cut(s) | 296 |
| BfoI | RGCGCY | 1 cut(s) | 466 |
| BisI | GCNGC | 2 cut(s) | 30, 285 |
| BlsI | GCNGC | 2 cut(s) | 31, 286 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmgT120I | GGNCC | 1 cut(s) | 268 |
| BmiI | GGNNCC | 1 cut(s) | 270 |
| BpiI | GAAGAC | 1 cut(s) | 82 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 337 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 277, 343 |
| BseDI | CCNNGG | 2 cut(s) | 321, 337 |
| BseGI | GGATG | 2 cut(s) | 424, 442 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 277, 343 |
| BseMII | CTCAG | 2 cut(s) | 266, 287 |
| BseSI | GKGCMC | 1 cut(s) | 240 |
| BseXI | GCAGC | 1 cut(s) | 296 |
| Bsh1236I | CGCG | 1 cut(s) | 310 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 277, 343 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| BspACI | CCGC | 4 cut(s) | 30, 128, 308, 347 |
| BspCNI | CTCAG | 2 cut(s) | 265, 286 |
| BspFNI | CGCG | 1 cut(s) | 310 |
| BspLI | GGNNCC | 1 cut(s) | 270 |
| BssECI | CCNNGG | 2 cut(s) | 321, 337 |
| BssMI | GATC | 1 cut(s) | 217 |
| BssT1I | CCWWGG | 1 cut(s) | 337 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstDEI | CTNAG | 3 cut(s) | 189, 252, 273 |
| BstF5I | GGATG | 2 cut(s) | 424, 442 |
| BstFNI | CGCG | 1 cut(s) | 310 |
| BstH2I | RGCGCY | 1 cut(s) | 466 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 29, 469 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstSLI | GKGCMC | 1 cut(s) | 240 |
| BstUI | CGCG | 1 cut(s) | 310 |
| BstV1I | GCAGC | 1 cut(s) | 296 |
| BstV2I | GAAGAC | 1 cut(s) | 82 |
| BtsCI | GGATG | 2 cut(s) | 424, 442 |
| BtsIMutI | CAGTG | 1 cut(s) | 395 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr13I | GGNCC | 1 cut(s) | 268 |
| CviAII | CATG | 3 cut(s) | 37, 134, 485 |
| CviJI | RGCY | 3 cut(s) | 29, 64, 287 |
| CviKI_1 | RGCY | 3 cut(s) | 29, 64, 287 |
| DdeI | CTNAG | 3 cut(s) | 189, 252, 273 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| EciI | GGCGGA | 1 cut(s) | 143 |
| Eco130I | CCWWGG | 1 cut(s) | 337 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco47III | AGCGCT | 1 cut(s) | 464 |
| EcoT14I | CCWWGG | 1 cut(s) | 337 |
| ErhI | CCWWGG | 1 cut(s) | 337 |
| FaeI | CATG | 3 cut(s) | 40, 137, 488 |
| FaiI | YATR | 6 cut(s) | 38, 75, 135, 184, 186, 486 |
| FatI | CATG | 3 cut(s) | 36, 133, 484 |
| FauI | CCCGC | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 285 |
| FokI | GGATG | 2 cut(s) | 431, 449 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 285 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 2 cut(s) | 30, 285 |
| HaeII | RGCGCY | 1 cut(s) | 466 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1II | CATG | 3 cut(s) | 40, 137, 488 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HincII | GTYRAC | 2 cut(s) | 15, 408 |
| HindII | GTYRAC | 2 cut(s) | 15, 408 |
| HinfI | GANTC | 3 cut(s) | 49, 312, 363 |
| HpaI | GTTAAC | 1 cut(s) | 408 |
| HphI | GGTGA | 4 cut(s) | 310, 337, 394, 530 |
| Hpy166II | GTNNAC | 3 cut(s) | 15, 268, 408 |
| Hpy188I | TCNGA | 2 cut(s) | 276, 360 |
| Hpy8I | GTNNAC | 3 cut(s) | 15, 268, 408 |
| Hpy99I | CGWCG | 1 cut(s) | 101 |
| HpyAV | CCTTC | 4 cut(s) | 43, 118, 271, 409 |
| HpyCH4V | TGCA | 3 cut(s) | 23, 284, 488 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 29, 469 |
| HpyF3I | CTNAG | 3 cut(s) | 189, 252, 273 |
| Hsp92II | CATG | 3 cut(s) | 40, 137, 488 |
| HspAI | GCGC | 1 cut(s) | 463 |
| KspAI | GTTAAC | 1 cut(s) | 408 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 2 cut(s) | 130, 301 |
| LpnPI | CCDG | 9 cut(s) | 38, 39, 74, 92, 196, 239, 473, 504, 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 296 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MboII | GAAGA | 2 cut(s) | 82, 172 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MluCI | AATT | 3 cut(s) | 179, 206, 425 |
| MnlI | CCTC | 6 cut(s) | 156, 162, 282, 316, 396, 405 |
| MseI | TTAA | 5 cut(s) | 44, 117, 369, 407, 423 |
| MslI | CAYNNNNRTG | 1 cut(s) | 323 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MvnI | CGCG | 1 cut(s) | 310 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 29, 469 |
| NdeII | GATC | 1 cut(s) | 217 |
| NlaIII | CATG | 3 cut(s) | 40, 137, 488 |
| NlaIV | GGNNCC | 1 cut(s) | 270 |
| NmuCI | GTSAC | 1 cut(s) | 316 |
| NspI | RCATGY | 1 cut(s) | 137 |
| OliI | CACNNNNGTG | 1 cut(s) | 323 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 407 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PfeI | GAWTC | 3 cut(s) | 49, 312, 363 |
| PkrI | GCNGC | 2 cut(s) | 31, 286 |
| PspN4I | GGNNCC | 1 cut(s) | 270 |
| PspPI | GGNCC | 1 cut(s) | 268 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| RseI | CAYNNNNRTG | 1 cut(s) | 323 |
| SaqAI | TTAA | 5 cut(s) | 44, 117, 369, 407, 423 |
| SatI | GCNGC | 2 cut(s) | 30, 285 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| Sau96I | GGNCC | 1 cut(s) | 268 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SetI | ASST | 7 cut(s) | 167, 282, 289, 327, 407, 446, 493 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 323 |
| Sse9I | AATT | 3 cut(s) | 179, 206, 425 |
| SsiI | CCGC | 4 cut(s) | 30, 128, 308, 347 |
| StyI | CCWWGG | 1 cut(s) | 337 |
| TaqI | TCGA | 4 cut(s) | 96, 122, 139, 525 |
| TasI | AATT | 3 cut(s) | 179, 206, 425 |
| TauI | GCSGC | 1 cut(s) | 32 |
| TfiI | GAWTC | 3 cut(s) | 49, 312, 363 |
| Tru1I | TTAA | 5 cut(s) | 44, 117, 369, 407, 423 |
| Tru9I | TTAA | 5 cut(s) | 44, 117, 369, 407, 423 |
| TscAI | CASTG | 1 cut(s) | 402 |
| TseFI | GTSAC | 1 cut(s) | 316 |
| TseI | GCWGC | 1 cut(s) | 284 |
| Tsp45I | GTSAC | 1 cut(s) | 316 |
| TspDTI | ATGAA | 3 cut(s) | 25, 62, 82 |
| TspRI | CASTG | 1 cut(s) | 402 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XapI | RAATTY | 1 cut(s) | 425 |
| XceI | RCATGY | 1 cut(s) | 137 |