FvH4_6g27021

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Forward (+)
20671759 .. 20675803
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27021.t1

Sequence Viewer

Length: 2259 bp
ATGATTGTTGTTATGCTTGATGAGAGGAAGAGTTTGATGTATGCCTTGTTAATTTTGGTTGAAGTTGATATAGTGGTGGTGGTTGACCGCCACTGCCGGCGGTTGACCGCCACAGCCGAGTGTTTGGAATTTGGGATAGTTTTGATGGCTCCATGGGACGAGAGGAGACACCACGTGAGGAGGGCTCTGACCGACGTCAGGCTTAGCCGTCTATACTGTACTATGCCTCCTAGACGGCGAACACAGAGAGCTCCTCCTGTGGGAGATGACATGAATGCACAAGAGGGTATGCTGGGAGCGTTTGAGCAGATTGTTAATCAGTTTGCTGCAGCAATGAACCCTCAGCCCCCGCCTGATTTTAGCATTAAGAGGGCCAAGGATAATGGTGCTGAGAAGTTTTCGATAGCTAAGGATCCCATTGAGGCCCAGGAGTGGATTGAGACTATGGAGAGAGTGTTTACTAGGATGAGTGTTCCTGATGATCGTAAGGTATTTGTGGCAGTGCAATGGTTGCACGGTCCTGCATGGCATTGGTGGGTTGGCATTTCTAGGGATTATGGGGATGCTTCTCTCATGGCTTGGGATGAATTCAAGGCCCATTTCAATGATCGTTACTGTAGTCGAGCTCATCTCCATAGGATGCAGGATCAGTTTATGAATTTGCAGAAGGGAGATATGTCAGTCTTGGAGTTTGAGCAGCATTTCCTGGCTAGAGCTCACCATGTTCCTGACTTGGAAAAGATGCAAGCAGTGTTGTATCCGAGATTTAGTGATGCAGTTGGGGCAGCTTTAAATATTGAGACCTCACAGACGAGTAGCCGACCCCGAGACTTTGGTGGCCCTAGTCAGGGGCCATCAAAGAGAGCAGCATCTACATCCGGTTCCGGATCTTCTGCGGGTAGTGGACGTAGTAGTAGCTCTGGTCATTCAGCCCGACCTAGACTCAGAGGTAGCTGGAGATTTGCTGGGGGATCGGCGGGCAGACGCCCCTTTAGTCAGTTTAGGGGTGGTATGAGTGGTAGTAGTGGCGGCCACAGTAGTCAGTCAGGTCAGTCTGGACAGTATCAGCCAGTTGGGTGTTTCGAGTGTGGCGAGCCAGGTCACTTTAAGAGAGATTGTCCCCGTTTGGCTCAAGGGGTCACGCCTACATTTTATCAGACTGCAGGTCAGACTTCAGTTGGCGCTTCTAGCAGTGGCTCACGTGCTAGTTCAGCAGCTAGAGGCGGTCCCCAGCAGGGTAGAGGTCAGAGAGGACGTCCTACCACTCAGGCTAGAGTTCATGCCATGACATTTCAGGAGGGCCGTACCTCGCCTGAGGTTATCATTGGTACGTTGTTTATTTTTGGCCAACCTGCATTTACTTTGATTGATCCGGGAGCTACCCATTCCTTTATGTCTAGTAGATTTGCACTTCATGCAAATGTGCTTTCATCACCTCTCCCGGGGGAGTGGTATGTGTCTTTGCCTTCGGGTGATGTGCTTAAAATTGAGTGGGTATTTAGGTCTTGTGAAGTTCTAGTTGAGGGGTATGATTTGGAGGCAAATTTAATTCCGTTAGAGATGGTTGATTTTGATGTGATTTTGGGGATGGATTTCTTAGAGGCACATCAGGCTTTGGTCGATTGTTTCCAGAAAACAGTAGTGTTCCGAAGTCTGGGGAAGCCAGAGATTACTTTTTGTGGAGAGCGAAATGTTTTGCCATCTTGCTTGATTTCAGCAGTAACAGCAGGAAAATTGCTGAGTAGGGGTTGTCAGGCATATTTAGCCCATGTTGTGGATACTCGTATAGGAGTGCTTAAGGTTGAAGACATTCCTGTAGTTAAAGAGTTCCCTGATGTTTTTCCTGAGGAGTTGCCGGGTTTACCTCCTACAAGGGAGATAGAGTTTACCATCGAATTACTTCCTGGTACAGCTCCTATTTCTCAGGCACCCTACAGGATGGCCCCGGCGGAATTGAAGGAGTTGAAGGTCCAATTGCAGGAGTTAGTGGACAAGGGCTTCATAAGGCCTAGTATGTCTCCTTGGGGTGCCCCAGTATTGTTTGTAAGGAAGAAGGATGGTAGTATGAGACTGTGCATTGATTATAGGAAGTTGAATCAAGTTACTATGAAAAATAAGTATCCGTTGCCTCGCATAGATGATTTGTTTGATCAGTTGAGGGGTGCTAAAGTCTTTTCCAAGATTGACTTGAGGTCCGGGTATCACCAGTTGCGGATTAGAGACTCTGACATAGCCAAGACTGCCTTTCGGTCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

753

Amino Acids

83.61

Weight (kDa)

8.84

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 131 - 241 5.2e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 167 - 244 1.6e-09 Retrotransposon gag protein
zf-CCHC PF00098 359 - 374 2.4e-06 Zinc knuckle
RVP_2 PF08284 422 - 550 1.6e-32 Retroviral aspartyl protease
RVT_1 PF00078 682 - 750 9.5e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 198, 1258
Acc36I ACCTGC 2 cut(s) 1154, 1360
AccB1I GGYRCC 2 cut(s) 1927, 2027
AccB7I CCANNNNNTGG 1 cut(s) 1774
AccIII TCCGGA 1 cut(s) 884
AclWI GGATC 6 cut(s) 407, 420, 654, 895, 979, 1364
AcoI YGGCCR 2 cut(s) 1030, 1345
AcsI RAATTY 4 cut(s) 128, 587, 658, 1543
AcuI CTGAAG 1 cut(s) 1158
AcvI CACGTG 2 cut(s) 175, 1202
AcyI GRCGYC 3 cut(s) 195, 985, 1255
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 4 cut(s) 220, 1306, 1330, 1909
AflII CTTAAG 1 cut(s) 1796
AgsI TTSAA 7 cut(s) 62, 592, 604, 1805, 1957, 1966, 2095
AhdI GACNNNNNGTC 2 cut(s) 1164, 2191
AjnI CCWGG 4 cut(s) 426, 705, 1096, 1903
Alw21I GWGCWC 3 cut(s) 253, 628, 718
Alw26I GTCTC 7 cut(s) 160, 434, 794, 822, 2022, 2062, 2214
AlwI GGATC 6 cut(s) 407, 420, 654, 895, 979, 1364
Ama87I CYCGRG 2 cut(s) 825, 1441
Aor13HI TCCGGA 1 cut(s) 884
ApeKI GCWGC 6 cut(s) 326, 329, 697, 785, 866, 1214
ApoI RAATTY 4 cut(s) 128, 587, 658, 1543
Asp700I GAANNNNTTC 2 cut(s) 1809, 1899
AspLEI GCGC 1 cut(s) 1184
AsuC2I CCSGG 6 cut(s) 1374, 1442, 1443, 1857, 1946, 2197
AsuHPI GGTGA 4 cut(s) 710, 1425, 1484, 2195
AvaI CYCGRG 2 cut(s) 825, 1441
AvaII GGWCC 4 cut(s) 518, 1226, 1969, 2193
AxyI CCTNAGG 2 cut(s) 1314, 1845
BaeGI GKGCMC 1 cut(s) 2032
BalI TGGCCA 1 cut(s) 1347
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 2 cut(s) 1927, 2027
BanII GRGCYC 4 cut(s) 187, 253, 628, 718
BbrPI CACGTG 2 cut(s) 175, 1202
BbsI GAAGAC 1 cut(s) 1812
Bbv12I GWGCWC 3 cut(s) 253, 628, 718
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 6 cut(s) 313, 341, 709, 797, 878, 1226
BccI CCATC 8 cut(s) 139, 862, 1555, 1582, 1708, 1898, 1933, 2051
BceAI ACGGC 3 cut(s) 192, 251, 1287
BciT130I CCWGG 4 cut(s) 428, 707, 1098, 1905
BciVI GTATCC 3 cut(s) 768, 1771, 2130
BclI TGATCA 1 cut(s) 2149
BcnI CCSGG 6 cut(s) 1374, 1442, 1443, 1857, 1946, 2197
BcoDI GTCTC 7 cut(s) 160, 434, 794, 822, 2022, 2062, 2214
BfmI CTRYAG 5 cut(s) 327, 616, 1161, 1815, 1933
BfoI RGCGCY 1 cut(s) 1185
BfrI CTTAAG 1 cut(s) 1796
BfuAI ACCTGC 2 cut(s) 1154, 1360
BfuI GTATCC 3 cut(s) 768, 1771, 2130
BisI GCNGC 7 cut(s) 327, 330, 698, 786, 867, 1030, 1215
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 7 cut(s) 328, 331, 699, 787, 868, 1031, 1216
Bme18I GGWCC 4 cut(s) 518, 1226, 1969, 2193
BmeRI GACNNNNNGTC 2 cut(s) 1164, 2191
BmeT110I CYCGRG 2 cut(s) 825, 1441
BmiI GGNNCC 8 cut(s) 150, 414, 852, 883, 1228, 1929, 1944, 2029
BmrI ACTGGG 1 cut(s) 2027
BmsI GCATC 5 cut(s) 553, 630, 732, 763, 878
BmuI ACTGGG 1 cut(s) 2027
BoxI GACNNNNGTC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 1812
BplI GAGNNNNNCTC 6 cut(s) 169, 201, 238, 270, 615, 647
BpmI CTGGAG 1 cut(s) 976
Bpu10I CCTNAGC 2 cut(s) 342, 408
Bpu1102I GCTNAGC 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 1116, 2209
BpuMI CCSGG 6 cut(s) 1374, 1442, 1443, 1857, 1946, 2197
BsaAI YACGTR 2 cut(s) 175, 1202
BsaHI GRCGYC 3 cut(s) 195, 985, 1255
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 7 cut(s) 152, 375, 426, 1441, 1442, 1944, 2021
BsaWI WCCGGW 2 cut(s) 878, 884
BsaXI ACNNNNNCTCC 6 cut(s) 211, 241, 440, 470, 1868, 1898
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 3 cut(s) 1070, 2033, 2206
Bse21I CCTNAGG 2 cut(s) 1314, 1845
Bse3DI GCAATG 2 cut(s) 339, 512
BseAI TCCGGA 1 cut(s) 884
BseBI CCWGG 4 cut(s) 428, 707, 1098, 1905
BseDI CCNNGG 7 cut(s) 152, 375, 426, 1441, 1442, 1944, 2021
BseGI GGATG 8 cut(s) 471, 568, 589, 645, 875, 1593, 1944, 2062
BseMI GCAATG 2 cut(s) 339, 512
BseMII CTCAG 8 cut(s) 356, 381, 958, 1280, 1305, 1730, 1836, 1937
BseNI ACTGG 3 cut(s) 1070, 2033, 2206
BseRI GAGGAG 4 cut(s) 178, 193, 243, 1862
BseSI GKGCMC 1 cut(s) 2032
BseXI GCAGC 6 cut(s) 313, 341, 709, 797, 878, 1226
BseYI CCCAGC 3 cut(s) 292, 965, 1230
BshNI GGYRCC 2 cut(s) 1927, 2027
BsiHKAI GWGCWC 3 cut(s) 253, 628, 718
BsiHKCI CYCGRG 2 cut(s) 825, 1441
BsiSI CCGG 8 cut(s) 97, 879, 885, 1373, 1442, 1856, 1946, 2196
BslFI GGGAC 3 cut(s) 170, 1104, 1212
BsmAI GTCTC 7 cut(s) 160, 434, 794, 822, 2022, 2062, 2214
BsmFI GGGAC 3 cut(s) 170, 1104, 1212
BsmI GAATGC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 794
BsoBI CYCGRG 2 cut(s) 825, 1441
Bsp1286I GDGCHC 5 cut(s) 187, 253, 628, 718, 2032
Bsp13I TCCGGA 1 cut(s) 884
Bsp143I GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
Bsp1720I GCTNAGC 1 cut(s) 203
Bsp19I CCATGG 1 cut(s) 152
BspCNI CTCAG 8 cut(s) 355, 382, 957, 1279, 1306, 1731, 1837, 1936
BspEI TCCGGA 1 cut(s) 884
BspLI GGNNCC 8 cut(s) 150, 414, 852, 883, 1228, 1929, 1944, 2029
BspMAI CTGCAG 2 cut(s) 331, 1165
BspMI ACCTGC 2 cut(s) 1154, 1360
BspPI GGATC 6 cut(s) 407, 420, 654, 895, 979, 1364
BspT107I GGYRCC 2 cut(s) 1927, 2027
BspTI CTTAAG 1 cut(s) 1796
BspTNI GGTCTC 1 cut(s) 794
BsrDI GCAATG 2 cut(s) 339, 512
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 3 cut(s) 1070, 2033, 2206
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 7 cut(s) 152, 375, 426, 1441, 1442, 1944, 2021
BssMI GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
BssNI GRCGYC 3 cut(s) 195, 985, 1255
BssT1I CCWWGG 3 cut(s) 152, 375, 2021
Bst2UI CCWGG 4 cut(s) 428, 707, 1098, 1905
Bst4CI ACNGT 7 cut(s) 218, 518, 617, 1037, 1062, 1639, 2073
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 3 cut(s) 195, 985, 1255
BstAFI CTTAAG 1 cut(s) 1796
BstAPI GCANNNNNTGC 2 cut(s) 511, 1415
BstBAI YACGTR 2 cut(s) 175, 1202
BstC8I GCNNGC 4 cut(s) 98, 747, 979, 1094
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 8 cut(s) 471, 568, 589, 645, 875, 1593, 1944, 2062
BstH2I RGCGCY 1 cut(s) 1185
BstHHI GCGC 1 cut(s) 1184
BstKTI GATC 8 cut(s) 415, 484, 610, 649, 890, 974, 1372, 2152
BstMAI GTCTC 7 cut(s) 160, 434, 794, 822, 2022, 2062, 2214
BstMBI GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
BstMWI GCNNNNNNNGC 9 cut(s) 511, 782, 1188, 1211, 1415, 1610, 1724, 1763, 2240
BstNI CCWGG 4 cut(s) 428, 707, 1098, 1905
BstPAI GACNNNNGTC 1 cut(s) 194
BstSFI CTRYAG 5 cut(s) 327, 616, 1161, 1815, 1933
BstSLI GKGCMC 1 cut(s) 2032
BstV1I GCAGC 6 cut(s) 313, 341, 709, 797, 878, 1226
BstV2I GAAGAC 1 cut(s) 1812
BstX2I RGATCY 2 cut(s) 412, 887
BstYI RGATCY 2 cut(s) 412, 887
Bsu36I CCTNAGG 2 cut(s) 1314, 1845
BsuI GTATCC 3 cut(s) 768, 1771, 2130
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 8 cut(s) 471, 568, 589, 645, 875, 1593, 1944, 2062
BtsI GCAGTG 4 cut(s) 91, 507, 756, 1198
BtsIMutI CAGTG 4 cut(s) 91, 507, 756, 1198
BveI ACCTGC 2 cut(s) 1154, 1360
Cac8I GCNNGC 4 cut(s) 98, 747, 979, 1094
CfoI GCGC 1 cut(s) 1184
Cfr10I RCCGGY 1 cut(s) 96
Cfr9I CCCGGG 1 cut(s) 1441
CseI GACGC 1 cut(s) 993
Csp6I GTAC 4 cut(s) 219, 1305, 1329, 1908
CviAII CATG 9 cut(s) 153, 271, 525, 574, 722, 1280, 1285, 1415, 1769
CviQI GTAC 4 cut(s) 219, 1305, 1329, 1908
DpnI GATC 8 cut(s) 414, 483, 609, 648, 889, 973, 1371, 2151
DpnII GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
DraI TTTAAA 1 cut(s) 792
DraIII CACNNNGTG 1 cut(s) 175
DriI GACNNNNNGTC 2 cut(s) 1164, 2191
EaeI YGGCCR 2 cut(s) 1030, 1345
Eam1104I CTCTTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 2 cut(s) 1164, 2191
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 1 cut(s) 1964
Ecl136II GAGCTC 3 cut(s) 251, 626, 716
Eco130I CCWWGG 3 cut(s) 152, 375, 2021
Eco147I AGGCCT 1 cut(s) 2008
Eco24I GRGCYC 4 cut(s) 187, 253, 628, 718
Eco31I GGTCTC 1 cut(s) 794
Eco47I GGWCC 4 cut(s) 518, 1226, 1969, 2193
Eco53kI GAGCTC 3 cut(s) 251, 626, 716
Eco57I CTGAAG 1 cut(s) 1158
Eco72I CACGTG 2 cut(s) 175, 1202
Eco81I CCTNAGG 2 cut(s) 1314, 1845
Eco88I CYCGRG 2 cut(s) 825, 1441
EcoICRI GAGCTC 3 cut(s) 251, 626, 716
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 4 cut(s) 426, 705, 1096, 1903
EcoT14I CCWWGG 3 cut(s) 152, 375, 2021
EcoT38I GRGCYC 4 cut(s) 187, 253, 628, 718
ErhI CCWWGG 3 cut(s) 152, 375, 2021
FaeI CATG 9 cut(s) 156, 274, 528, 577, 725, 1283, 1288, 1418, 1772
FalI AAGNNNNNCTT 3 cut(s) 2171, 2203, 2228
FaqI GGGAC 3 cut(s) 170, 1104, 1212
FatI CATG 9 cut(s) 152, 270, 524, 573, 721, 1279, 1284, 1414, 1768
FauI CCCGC 3 cut(s) 357, 889, 970
FbaI TGATCA 1 cut(s) 2149
Fnu4HI GCNGC 7 cut(s) 327, 330, 698, 786, 867, 1030, 1215
FokI GGATG 8 cut(s) 478, 575, 596, 652, 862, 1600, 1951, 2069
FriOI GRGCYC 4 cut(s) 187, 253, 628, 718
Fsp4HI GCNGC 7 cut(s) 327, 330, 698, 786, 867, 1030, 1215
GlaI GCGC 1 cut(s) 1183
GluI GCNGC 7 cut(s) 327, 330, 698, 786, 867, 1030, 1215
GsaI CCCAGC 3 cut(s) 296, 969, 1234
GsuI CTGGAG 1 cut(s) 976
HaeII RGCGCY 1 cut(s) 1185
HapII CCGG 8 cut(s) 97, 879, 885, 1373, 1442, 1856, 1946, 2196
HgaI GACGC 1 cut(s) 993
HhaI GCGC 1 cut(s) 1184
Hin1I GRCGYC 3 cut(s) 195, 985, 1255
Hin1II CATG 9 cut(s) 156, 274, 528, 577, 725, 1283, 1288, 1418, 1772
Hin6I GCGC 1 cut(s) 1182
HinP1I GCGC 1 cut(s) 1182
HincII GTYRAC 2 cut(s) 85, 105
HindII GTYRAC 2 cut(s) 85, 105
HinfI GANTC 3 cut(s) 942, 2095, 2222
HpaII CCGG 8 cut(s) 97, 879, 885, 1373, 1442, 1856, 1946, 2196
HphI GGTGA 4 cut(s) 710, 1425, 1484, 2195
Hpy166II GTNNAC 7 cut(s) 85, 105, 459, 905, 1862, 1887, 1990
Hpy188I TCNGA 8 cut(s) 189, 762, 947, 1158, 1170, 1248, 1649, 2227
Hpy188III TCNNGA 7 cut(s) 476, 728, 885, 1056, 1295, 1630, 1844
Hpy8I GTNNAC 7 cut(s) 85, 105, 459, 905, 1862, 1887, 1990
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 5 cut(s) 661, 1476, 1951, 1960, 2047
HpyCH4III ACNGT 7 cut(s) 218, 518, 617, 1037, 1062, 1639, 2073
HpyCH4IV ACGT 6 cut(s) 174, 195, 907, 1201, 1255, 1331
HpyF10VI GCNNNNNNNGC 9 cut(s) 511, 782, 1188, 1211, 1415, 1610, 1724, 1763, 2240
HpySE526I ACGT 6 cut(s) 174, 195, 907, 1201, 1255, 1331
Hsp92I GRCGYC 3 cut(s) 195, 985, 1255
Hsp92II CATG 9 cut(s) 156, 274, 528, 577, 725, 1283, 1288, 1418, 1772
HspAI GCGC 1 cut(s) 1182
Kpn2I TCCGGA 1 cut(s) 884
KroI GCCGGC 1 cut(s) 96
KroNI GCCGGC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 2149
Kzo9I GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
LmnI GCTCC 5 cut(s) 154, 256, 296, 1376, 1918
Lsp1109I GCAGC 6 cut(s) 313, 341, 709, 797, 878, 1226
LweI GCATC 5 cut(s) 553, 630, 732, 763, 878
MaeII ACGT 6 cut(s) 174, 195, 907, 1201, 1255, 1331
MaeIII GTNAC 6 cut(s) 611, 1100, 1138, 1720, 2101, 2250
MalI GATC 8 cut(s) 414, 483, 609, 648, 889, 973, 1371, 2151
MboI GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
MboII GAAGA 4 cut(s) 40, 882, 1817, 2062
MfeI CAATTG 1 cut(s) 1973
MflI RGATCY 2 cut(s) 412, 887
MhlI GDGCHC 5 cut(s) 187, 253, 628, 718, 2032
MlsI TGGCCA 1 cut(s) 1347
MluNI TGGCCA 1 cut(s) 1347
MlyI GAGTC 2 cut(s) 936, 2216
Mox20I TGGCCA 1 cut(s) 1347
MroI TCCGGA 1 cut(s) 884
MroNI GCCGGC 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 1809, 1899
MscI TGGCCA 1 cut(s) 1347
MseI TTAA 9 cut(s) 50, 315, 366, 791, 1107, 1482, 1547, 1797, 1821
MslI CAYNNNNRTG 2 cut(s) 603, 1419
Msp20I TGGCCA 1 cut(s) 1347
MspCI CTTAAG 1 cut(s) 1796
MspI CCGG 8 cut(s) 97, 879, 885, 1373, 1442, 1856, 1946, 2196
MunI CAATTG 1 cut(s) 1973
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 4 cut(s) 428, 707, 1098, 1905
MwoI GCNNNNNNNGC 9 cut(s) 511, 782, 1188, 1211, 1415, 1610, 1724, 1763, 2240
NaeI GCCGGC 1 cut(s) 98
NciI CCSGG 6 cut(s) 1374, 1442, 1443, 1857, 1946, 2197
NcoI CCATGG 1 cut(s) 152
NdeII GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
NgoMIV GCCGGC 1 cut(s) 96
NlaIII CATG 9 cut(s) 156, 274, 528, 577, 725, 1283, 1288, 1418, 1772
NlaIV GGNNCC 8 cut(s) 150, 414, 852, 883, 1228, 1929, 1944, 2029
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 3 cut(s) 1100, 1138, 2250
PceI AGGCCT 1 cut(s) 2008
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 98
PdmI GAANNNNTTC 2 cut(s) 1809, 1899
PfeI GAWTC 1 cut(s) 2095
PflMI CCANNNNNTGG 1 cut(s) 1774
PfoI TCCNGGA 1 cut(s) 1372
PkrI GCNGC 7 cut(s) 328, 331, 699, 787, 868, 1031, 1216
PleI GAGTC 2 cut(s) 936, 2216
PmaCI CACGTG 2 cut(s) 175, 1202
PmlI CACGTG 2 cut(s) 175, 1202
PpsI GAGTC 2 cut(s) 936, 2216
Ppu21I YACGTR 2 cut(s) 175, 1202
PshAI GACNNNNGTC 1 cut(s) 194
Psp124BI GAGCTC 3 cut(s) 253, 628, 718
Psp6I CCWGG 4 cut(s) 426, 705, 1096, 1903
PspCI CACGTG 2 cut(s) 175, 1202
PspFI CCCAGC 3 cut(s) 292, 965, 1230
PspGI CCWGG 4 cut(s) 426, 705, 1096, 1903
PspN4I GGNNCC 8 cut(s) 150, 414, 852, 883, 1228, 1929, 1944, 2029
PstI CTGCAG 2 cut(s) 331, 1165
PsuI RGATCY 2 cut(s) 412, 887
RsaI GTAC 4 cut(s) 220, 1306, 1330, 1909
RsaNI GTAC 4 cut(s) 219, 1305, 1329, 1908
RseI CAYNNNNRTG 2 cut(s) 603, 1419
SacI GAGCTC 3 cut(s) 253, 628, 718
SaqAI TTAA 9 cut(s) 50, 315, 366, 791, 1107, 1482, 1547, 1797, 1821
SatI GCNGC 7 cut(s) 327, 330, 698, 786, 867, 1030, 1215
Sau3AI GATC 8 cut(s) 412, 481, 607, 646, 887, 971, 1369, 2149
SchI GAGTC 2 cut(s) 936, 2216
SduI GDGCHC 5 cut(s) 187, 253, 628, 718, 2032
SfaNI GCATC 5 cut(s) 553, 630, 732, 763, 878
SfcI CTRYAG 5 cut(s) 327, 616, 1161, 1815, 1933
SinI GGWCC 4 cut(s) 518, 1226, 1969, 2193
SmaI CCCGGG 1 cut(s) 1443
SmiMI CAYNNNNRTG 2 cut(s) 603, 1419
SmlI CTYRAG 3 cut(s) 1131, 1796, 2188
SmoI CTYRAG 3 cut(s) 1131, 1796, 2188
SseBI AGGCCT 1 cut(s) 2008
SspI AATATT 1 cut(s) 796
SstI GAGCTC 3 cut(s) 253, 628, 718
StuI AGGCCT 1 cut(s) 2008
StyI CCWWGG 3 cut(s) 152, 375, 2021
TaaI ACNGT 7 cut(s) 218, 518, 617, 1037, 1062, 1639, 2073
TaiI ACGT 6 cut(s) 177, 198, 910, 1204, 1258, 1334
TaqI TCGA 5 cut(s) 401, 622, 1083, 1620, 1893
TaqII GACCGA 2 cut(s) 206, 2238
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 1032
TfiI GAWTC 1 cut(s) 2095
Tru1I TTAA 9 cut(s) 50, 315, 366, 791, 1107, 1482, 1547, 1797, 1821
Tru9I TTAA 9 cut(s) 50, 315, 366, 791, 1107, 1482, 1547, 1797, 1821
TscAI CASTG 4 cut(s) 98, 507, 756, 1198
TseFI GTSAC 3 cut(s) 1100, 1138, 2250
TseI GCWGC 6 cut(s) 326, 329, 697, 785, 866, 1214
Tsp45I GTSAC 3 cut(s) 1100, 1138, 2250
TspDTI ATGAA 9 cut(s) 287, 350, 600, 671, 1268, 1403, 1419, 1990, 2123
TspGWI ACGGA 2 cut(s) 1542, 2112
TspMI CCCGGG 1 cut(s) 1441
TspRI CASTG 4 cut(s) 98, 507, 756, 1198
Van91I CCANNNNNTGG 1 cut(s) 1774
Vha464I CTTAAG 1 cut(s) 1796
VpaK11BI GGWCC 4 cut(s) 518, 1226, 1969, 2193
XapI RAATTY 4 cut(s) 128, 587, 658, 1543
XmaI CCCGGG 1 cut(s) 1441
XmnI GAANNNNTTC 2 cut(s) 1809, 1899
ZraI GACGTC 2 cut(s) 196, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.