FvH4_6g05202

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Reverse (-)
2930562 .. 2933372
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05202.t1

Sequence Viewer

Length: 2679 bp
ATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCTTGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTTATAGATGACATATTGGTTTATTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAGGGAGTTAGTGTGGATCCCCTAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAAGTTGACCAGAAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTTCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCGGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCCATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTAGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTCGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGGGAAAAAGAGTTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACCGCTCAAAGTAGGCAGAAGAGTTATGCAGATGTCCGTAGGAGAGATCTTGAATTTCAAGTAGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGGTTGTGCGCTTTGGGAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCGAGGGTTATCCCGGATACATAATGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGATCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTTTGGAGAAGTCATCAAGTAGAAGAAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGACATGTATGCTAATTTCGAGGACGAAATTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

893

Amino Acids

102.8

Weight (kDa)

9.5

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 36 - 196 4.1e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 259 - 353 2.2e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 285 - 383 6.3e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 498 - 555 2.3e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 743 - 807 4.2e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2677
AbsI CCTCGAGG 1 cut(s) 2367
Acc36I ACCTGC 1 cut(s) 680
Acc65I GGTACC 1 cut(s) 1976
AccB1I GGYRCC 3 cut(s) 122, 224, 1976
AccBSI CCGCTC 1 cut(s) 2168
AccII CGCG 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 847
AclWI GGATC 8 cut(s) 203, 271, 284, 390, 605, 618, 1370, 2423
AcoI YGGCCR 1 cut(s) 1598
AcsI RAATTY 3 cut(s) 1946, 2216, 2669
AcuI CTGAAG 3 cut(s) 1665, 1946, 1975
AfaI GTAC 2 cut(s) 1762, 1978
AfiI CCNNNNNNNGG 5 cut(s) 622, 759, 965, 1770, 2261
AflIII ACRYGT 1 cut(s) 2645
AgeI ACCGGT 1 cut(s) 2494
AjiI CACGTC 1 cut(s) 893
AjnI CCWGG 1 cut(s) 1171
AleI CACNNNNGTG 1 cut(s) 656
Alw21I GWGCWC 4 cut(s) 94, 832, 1869, 1960
Alw26I GTCTC 4 cut(s) 84, 124, 1021, 1108
AlwI GGATC 8 cut(s) 203, 271, 284, 390, 605, 618, 1370, 2423
Ama87I CYCGRG 2 cut(s) 2299, 2367
Aor13HI TCCGGA 1 cut(s) 847
AoxI GGCC 5 cut(s) 68, 1334, 1598, 2104, 2311
ApoI RAATTY 3 cut(s) 1946, 2216, 2669
ArsI GACNNNNNNTTYG 4 cut(s) 1919, 1951, 2458, 2490
AsiGI ACCGGT 1 cut(s) 2494
Asp700I GAANNNNTTC 1 cut(s) 2496
Asp718I GGTACC 1 cut(s) 1976
AspLEI GCGC 2 cut(s) 705, 2274
AspS9I GGNCC 4 cut(s) 1723, 1927, 2105, 2312
AsuC2I CCSGG 2 cut(s) 1554, 2380
AsuHPI GGTGA 6 cut(s) 299, 352, 1723, 1798, 1801, 2240
AsuII TTCGAA 1 cut(s) 1409
AvaI CYCGRG 2 cut(s) 2299, 2367
AvaII GGWCC 2 cut(s) 1723, 1927
BalI TGGCCA 1 cut(s) 1600
BamHI GGATCC 2 cut(s) 276, 610
BanI GGYRCC 3 cut(s) 122, 224, 1976
BanII GRGCYC 2 cut(s) 1869, 1960
BarI GAAGNNNNNNTAC 2 cut(s) 2394, 2426
BbsI GAAGAC 3 cut(s) 35, 652, 1070
Bbv12I GWGCWC 4 cut(s) 94, 832, 1869, 1960
BccI CCATC 8 cut(s) 113, 1119, 1123, 1234, 1390, 1442, 1763, 2012
BceAI ACGGC 1 cut(s) 1681
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BciT130I CCWGG 1 cut(s) 1173
BciVI GTATCC 3 cut(s) 2376, 2413, 2635
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 2 cut(s) 1554, 2380
BcoDI GTCTC 4 cut(s) 84, 124, 1021, 1108
BfaI CTAG 4 cut(s) 72, 888, 899, 945
BfmI CTRYAG 1 cut(s) 1275
BfoI RGCGCY 1 cut(s) 706
BfuAI ACCTGC 1 cut(s) 680
BfuI GTATCC 3 cut(s) 2376, 2413, 2635
BglII AGATCT 1 cut(s) 2209
BlpI GCTNAGC 1 cut(s) 2294
Bme1390I CCNGG 3 cut(s) 1173, 1554, 2380
Bme18I GGWCC 2 cut(s) 1723, 1927
BmeT110I CYCGRG 2 cut(s) 2299, 2367
BmgBI CACGTC 1 cut(s) 893
BmgT120I GGNCC 4 cut(s) 1723, 1927, 2105, 2312
BmrFI CCNGG 3 cut(s) 1173, 1554, 2380
BmsI GCATC 6 cut(s) 333, 493, 871, 903, 1186, 2605
BpiI GAAGAC 3 cut(s) 35, 652, 1070
BplI GAGNNNNNCTC 2 cut(s) 2142, 2174
BpmI CTGGAG 2 cut(s) 78, 1010
Bpu10I CCTNAGC 1 cut(s) 2528
Bpu1102I GCTNAGC 1 cut(s) 2294
Bpu14I TTCGAA 1 cut(s) 1409
BpuEI CTTGAG 3 cut(s) 1001, 1712, 2144
BpuMI CCSGG 2 cut(s) 1554, 2380
Bsa29I ATCGAT 2 cut(s) 198, 2353
BsaJI CCNNGG 6 cut(s) 83, 191, 369, 1734, 2255, 2300
BsaWI WCCGGW 2 cut(s) 847, 2494
BsaXI ACNNNNNCTCC 8 cut(s) 591, 621, 814, 844, 852, 882, 2042, 2072
Bsc4I CCNNNNNNNGG 5 cut(s) 622, 759, 965, 1770, 2261
Bse118I RCCGGY 1 cut(s) 2494
Bse1I ACTGG 5 cut(s) 95, 1320, 1337, 1709, 1829
BseAI TCCGGA 1 cut(s) 847
BseBI CCWGG 1 cut(s) 1173
BseCI ATCGAT 2 cut(s) 198, 2353
BseDI CCNNGG 6 cut(s) 83, 191, 369, 1734, 2255, 2300
BseGI GGATG 7 cut(s) 856, 1134, 1168, 1303, 1549, 2005, 2646
BseLI CCNNNNNNNGG 5 cut(s) 622, 759, 965, 1770, 2261
BseMII CTCAG 1 cut(s) 2024
BseNI ACTGG 5 cut(s) 95, 1320, 1337, 1709, 1829
BseRI GAGGAG 2 cut(s) 726, 2619
BsgI GTGCAG 1 cut(s) 1800
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 2512
BshFI GGCC 5 cut(s) 70, 1336, 1600, 2106, 2313
BshNI GGYRCC 3 cut(s) 122, 224, 1976
BshTI ACCGGT 1 cut(s) 2494
BshVI ATCGAT 2 cut(s) 198, 2353
BsiEI CGRYCG 1 cut(s) 2512
BsiHKAI GWGCWC 4 cut(s) 94, 832, 1869, 1960
BsiHKCI CYCGRG 2 cut(s) 2299, 2367
BsiSI CCGG 4 cut(s) 848, 1553, 2380, 2495
BslFI GGGAC 3 cut(s) 1465, 1736, 1940
BslI CCNNNNNNNGG 5 cut(s) 622, 759, 965, 1770, 2261
BsmAI GTCTC 4 cut(s) 84, 124, 1021, 1108
BsmFI GGGAC 3 cut(s) 1465, 1736, 1940
BsnI GGCC 5 cut(s) 70, 1336, 1600, 2106, 2313
BsoBI CYCGRG 2 cut(s) 2299, 2367
Bsp119I TTCGAA 1 cut(s) 1409
Bsp1286I GDGCHC 4 cut(s) 94, 832, 1869, 1960
Bsp13I TCCGGA 1 cut(s) 847
Bsp1720I GCTNAGC 1 cut(s) 2294
Bsp19I CCATGG 1 cut(s) 1734
BspANI GGCC 5 cut(s) 70, 1336, 1600, 2106, 2313
BspCNI CTCAG 1 cut(s) 2023
BspDI ATCGAT 2 cut(s) 198, 2353
BspEI TCCGGA 1 cut(s) 847
BspFNI CGCG 1 cut(s) 371
BspHI TCATGA 2 cut(s) 387, 982
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 8 cut(s) 203, 271, 284, 390, 605, 618, 1370, 2423
BspQI GCTCTTC 1 cut(s) 1965
BspT104I TTCGAA 1 cut(s) 1409
BspT107I GGYRCC 3 cut(s) 122, 224, 1976
BsrBI CCGCTC 1 cut(s) 2168
BsrFI RCCGGY 1 cut(s) 2494
BsrI ACTGG 5 cut(s) 95, 1320, 1337, 1709, 1829
BssAI RCCGGY 1 cut(s) 2494
BssECI CCNNGG 6 cut(s) 83, 191, 369, 1734, 2255, 2300
BssT1I CCWWGG 3 cut(s) 83, 1734, 2255
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 4 cut(s) 169, 658, 1368, 1781
Bst6I CTCTTC 9 cut(s) 1438, 1491, 1499, 1604, 1965, 1994, 2177, 2481, 2640
BstAPI GCANNNNNTGC 2 cut(s) 1544, 2615
BstBI TTCGAA 1 cut(s) 1409
BstC8I GCNNGC 4 cut(s) 477, 791, 996, 1272
BstDEI CTNAG 6 cut(s) 488, 531, 1202, 2010, 2294, 2528
BstDSI CCRYGG 2 cut(s) 369, 1734
BstENI CCTNNNNNAGG 1 cut(s) 2259
BstF5I GGATG 7 cut(s) 856, 1134, 1168, 1303, 1549, 2005, 2646
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 706
BstHHI GCGC 2 cut(s) 705, 2274
BstMAI GTCTC 4 cut(s) 84, 124, 1021, 1108
BstMCI CGRYCG 1 cut(s) 2512
BstNI CCWGG 1 cut(s) 1173
BstNSI RCATGY 3 cut(s) 79, 479, 2649
BstSCI CCNGG 3 cut(s) 1171, 1552, 2378
BstSFI CTRYAG 1 cut(s) 1275
BstUI CGCG 1 cut(s) 371
BstV2I GAAGAC 3 cut(s) 35, 652, 1070
BstX2I RGATCY 4 cut(s) 276, 382, 610, 2209
BstYI RGATCY 4 cut(s) 276, 382, 610, 2209
Bsu15I ATCGAT 2 cut(s) 198, 2353
BsuI GTATCC 3 cut(s) 2376, 2413, 2635
BsuRI GGCC 5 cut(s) 70, 1336, 1600, 2106, 2313
BsuTUI ATCGAT 2 cut(s) 198, 2353
BtgI CCRYGG 2 cut(s) 369, 1734
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 7 cut(s) 856, 1134, 1168, 1303, 1549, 2005, 2646
BtsI GCAGTG 2 cut(s) 636, 1995
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 4 cut(s) 477, 791, 996, 1272
CciI TCATGA 2 cut(s) 387, 982
CfoI GCGC 2 cut(s) 705, 2274
Cfr10I RCCGGY 1 cut(s) 2494
Cfr13I GGNCC 4 cut(s) 1723, 1927, 2105, 2312
Cfr42I CCGCGG 1 cut(s) 372
ClaI ATCGAT 2 cut(s) 198, 2353
Csp6I GTAC 2 cut(s) 1761, 1977
CspAI ACCGGT 1 cut(s) 2494
CviQI GTAC 2 cut(s) 1761, 1977
DdeI CTNAG 6 cut(s) 488, 531, 1202, 2010, 2294, 2528
DraI TTTAAA 1 cut(s) 1465
EaeI YGGCCR 1 cut(s) 1598
Eam1104I CTCTTC 9 cut(s) 1438, 1491, 1499, 1604, 1965, 1994, 2177, 2481, 2640
EarI CTCTTC 9 cut(s) 1438, 1491, 1499, 1604, 1965, 1994, 2177, 2481, 2640
EciI GGCGGA 1 cut(s) 1877
Ecl136II GAGCTC 2 cut(s) 1867, 1958
Eco130I CCWWGG 3 cut(s) 83, 1734, 2255
Eco24I GRGCYC 2 cut(s) 1869, 1960
Eco47I GGWCC 2 cut(s) 1723, 1927
Eco53kI GAGCTC 2 cut(s) 1867, 1958
Eco57I CTGAAG 3 cut(s) 1665, 1946, 1975
Eco88I CYCGRG 2 cut(s) 2299, 2367
EcoICRI GAGCTC 2 cut(s) 1867, 1958
EcoNI CCTNNNNNAGG 1 cut(s) 2259
EcoO109I RGGNCCY 1 cut(s) 1927
EcoRII CCWGG 1 cut(s) 1171
EcoT14I CCWWGG 3 cut(s) 83, 1734, 2255
EcoT22I ATGCAT 1 cut(s) 140
EcoT38I GRGCYC 2 cut(s) 1869, 1960
ErhI CCWWGG 3 cut(s) 83, 1734, 2255
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FaqI GGGAC 3 cut(s) 1465, 1736, 1940
FauI CCCGC 3 cut(s) 376, 1350, 2553
FauNDI CATATG 1 cut(s) 1540
FbaI TGATCA 1 cut(s) 211
FokI GGATG 7 cut(s) 863, 1141, 1155, 1310, 1536, 1992, 2653
FriOI GRGCYC 2 cut(s) 1869, 1960
FspBI CTAG 4 cut(s) 72, 888, 899, 945
GlaI GCGC 2 cut(s) 704, 2273
GsuI CTGGAG 2 cut(s) 78, 1010
HaeII RGCGCY 1 cut(s) 706
HaeIII GGCC 5 cut(s) 70, 1336, 1600, 2106, 2313
HapII CCGG 4 cut(s) 848, 1553, 2380, 2495
HhaI GCGC 2 cut(s) 705, 2274
Hin6I GCGC 2 cut(s) 703, 2272
HinP1I GCGC 2 cut(s) 703, 2272
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HindIII AAGCTT 1 cut(s) 2291
HpaII CCGG 4 cut(s) 848, 1553, 2380, 2495
HphI GGTGA 6 cut(s) 299, 352, 1723, 1798, 1801, 2240
Hpy166II GTNNAC 2 cut(s) 750, 1092
Hpy8I GTNNAC 2 cut(s) 750, 1092
HpyAV CCTTC 5 cut(s) 463, 1389, 1576, 1689, 2442
HpyCH4III ACNGT 4 cut(s) 169, 658, 1368, 1781
HpyCH4IV ACGT 1 cut(s) 892
HpyF3I CTNAG 6 cut(s) 488, 531, 1202, 2010, 2294, 2528
HpySE526I ACGT 1 cut(s) 892
HspAI GCGC 2 cut(s) 703, 2272
KflI GGGWCCC 1 cut(s) 1927
Kpn2I TCCGGA 1 cut(s) 847
KpnI GGTACC 1 cut(s) 1980
Ksp22I TGATCA 1 cut(s) 211
KspI CCGCGG 1 cut(s) 372
LguI GCTCTTC 1 cut(s) 1965
LweI GCATC 6 cut(s) 333, 493, 871, 903, 1186, 2605
MaeI CTAG 4 cut(s) 72, 888, 899, 945
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 5 cut(s) 163, 287, 312, 658, 2122
MbiI CCGCTC 1 cut(s) 2168
MfeI CAATTG 2 cut(s) 35, 950
MflI RGATCY 4 cut(s) 276, 382, 610, 2209
MhlI GDGCHC 4 cut(s) 94, 832, 1869, 1960
MlsI TGGCCA 1 cut(s) 1600
MluNI TGGCCA 1 cut(s) 1600
MlyI GAGTC 5 cut(s) 25, 1084, 1447, 1797, 2151
Mox20I TGGCCA 1 cut(s) 1600
Mph1103I ATGCAT 1 cut(s) 140
MroI TCCGGA 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 2496
MscI TGGCCA 1 cut(s) 1600
MseI TTAA 7 cut(s) 108, 765, 1107, 1136, 1464, 2114, 2139
MslI CAYNNNNRTG 4 cut(s) 656, 1565, 1709, 1733
Msp20I TGGCCA 1 cut(s) 1600
MspA1I CMGCKG 2 cut(s) 11, 371
MspI CCGG 4 cut(s) 848, 1553, 2380, 2495
MspR9I CCNGG 3 cut(s) 1173, 1554, 2380
MunI CAATTG 2 cut(s) 35, 950
MvaI CCWGG 1 cut(s) 1173
MvnI CGCG 1 cut(s) 371
NciI CCSGG 2 cut(s) 1554, 2380
NcoI CCATGG 1 cut(s) 1734
NdeI CATATG 1 cut(s) 1540
NmeAIII GCCGAG 1 cut(s) 1514
NmuCI GTSAC 4 cut(s) 163, 287, 312, 658
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 3 cut(s) 79, 479, 2649
NspV TTCGAA 1 cut(s) 1409
OliI CACNNNNGTG 1 cut(s) 656
PaeI GCATGC 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 2367
PagI TCATGA 2 cut(s) 387, 982
PciI ACATGT 1 cut(s) 2645
PciSI GCTCTTC 1 cut(s) 1965
PcsI WCGNNNNNNNCGW 1 cut(s) 1930
PdmI GAANNNNTTC 1 cut(s) 2496
PfeI GAWTC 6 cut(s) 157, 667, 1907, 1935, 2503, 2598
PflFI GACNNNGTC 1 cut(s) 894
PfoI TCCNGGA 2 cut(s) 1171, 2378
PinAI ACCGGT 1 cut(s) 2494
Ple19I CGATCG 1 cut(s) 2512
PleI GAGTC 5 cut(s) 25, 1083, 1447, 1797, 2151
PpsI GAGTC 5 cut(s) 25, 1083, 1447, 1797, 2151
PpuMI RGGWCCY 1 cut(s) 1927
PscI ACATGT 1 cut(s) 2645
PsiI TTATAA 1 cut(s) 2677
Psp124BI GAGCTC 2 cut(s) 1869, 1960
Psp5II RGGWCCY 1 cut(s) 1927
Psp6I CCWGG 1 cut(s) 1171
PspGI CCWGG 1 cut(s) 1171
PspPI GGNCC 4 cut(s) 1723, 1927, 2105, 2312
PspPPI RGGWCCY 1 cut(s) 1927
PspXI VCTCGAGB 1 cut(s) 2367
PsuI RGATCY 4 cut(s) 276, 382, 610, 2209
PsyI GACNNNGTC 1 cut(s) 894
PvuI CGATCG 1 cut(s) 2512
RsaI GTAC 2 cut(s) 1762, 1978
RsaNI GTAC 2 cut(s) 1761, 1977
RseI CAYNNNNRTG 4 cut(s) 656, 1565, 1709, 1733
SacI GAGCTC 2 cut(s) 1869, 1960
SacII CCGCGG 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 1965
SaqAI TTAA 7 cut(s) 108, 765, 1107, 1136, 1464, 2114, 2139
Sau96I GGNCC 4 cut(s) 1723, 1927, 2105, 2312
SchI GAGTC 5 cut(s) 25, 1084, 1447, 1797, 2151
ScrFI CCNGG 3 cut(s) 1173, 1554, 2380
SduI GDGCHC 4 cut(s) 94, 832, 1869, 1960
SfaNI GCATC 6 cut(s) 333, 493, 871, 903, 1186, 2605
SfcI CTRYAG 1 cut(s) 1275
Sfr274I CTCGAG 1 cut(s) 2367
Sfr303I CCGCGG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 1409
SgrBI CCGCGG 1 cut(s) 372
SinI GGWCC 2 cut(s) 1723, 1927
SlaI CTCGAG 1 cut(s) 2367
SmiMI CAYNNNNRTG 4 cut(s) 656, 1565, 1709, 1733
SmlI CTYRAG 4 cut(s) 1016, 1691, 2159, 2367
SmoI CTYRAG 4 cut(s) 1016, 1691, 2159, 2367
SphI GCATGC 1 cut(s) 479
SspI AATATT 1 cut(s) 498
SspMI CTAG 4 cut(s) 72, 888, 899, 945
SstI GAGCTC 2 cut(s) 1869, 1960
StyD4I CCNGG 3 cut(s) 1171, 1552, 2378
StyI CCWWGG 3 cut(s) 83, 1734, 2255
TaaI ACNGT 4 cut(s) 169, 658, 1368, 1781
TaiI ACGT 1 cut(s) 895
TaqII GACCGA 1 cut(s) 300
TauI GCSGC 3 cut(s) 374, 961, 1421
TfiI GAWTC 6 cut(s) 157, 667, 1907, 1935, 2503, 2598
Tru1I TTAA 7 cut(s) 108, 765, 1107, 1136, 1464, 2114, 2139
Tru9I TTAA 7 cut(s) 108, 765, 1107, 1136, 1464, 2114, 2139
TseFI GTSAC 4 cut(s) 163, 287, 312, 658
Tsp45I GTSAC 4 cut(s) 163, 287, 312, 658
TspGWI ACGGA 4 cut(s) 174, 677, 2189, 2617
Tth111I GACNNNGTC 1 cut(s) 894
VpaK11BI GGWCC 2 cut(s) 1723, 1927
XagI CCTNNNNNAGG 1 cut(s) 2259
XapI RAATTY 3 cut(s) 1946, 2216, 2669
XbaI TCTAGA 1 cut(s) 887
XceI RCATGY 3 cut(s) 79, 479, 2649
XcmI CCANNNNNNNNNTGG 1 cut(s) 1716
XhoI CTCGAG 1 cut(s) 2367
XmnI GAANNNNTTC 1 cut(s) 2496
XspI CTAG 4 cut(s) 72, 888, 899, 945
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.