FvH4_6g25381

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Forward (+)
19229020 .. 19231068
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25381.t1

Sequence Viewer

Length: 2049 bp
ATGTCTAGTCGATTCGCCCTCCATGCCAATGTGCCATCATCCTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTTTTTGGTGGTTGTGAAGTTTTAGTGGAAGGAATTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTCTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATACAAATATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAAGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGACGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCTGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCTAAGATTGAGTTGAGATCGGGTTATCATCAGTTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTAGAAAAGTCGCAGTTATTTTCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTCTTAGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAAAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAAGTTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGTGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCGGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGGTGGATGGAGTTAATCAATGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGTTACAGGAGTGGATTTATCAGTGGGTGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCTATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCCGTTAGAAGAGATGGGACTCTGTTGTTTAAGAACCGGCTATGTGTTCCAAAAGAAATGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

683

Amino Acids

77.3

Weight (kDa)

8.28

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 2 - 87 1.2e-16 Retroviral aspartyl protease
RVT_1 PF00078 218 - 378 1.2e-33 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 441 - 535 1.5e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 467 - 565 6.6e-33 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1226
AccB1I GGYRCC 3 cut(s) 535, 668, 770
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccII CGCG 1 cut(s) 917
AccIII TCCGGA 2 cut(s) 439, 1393
AclWI GGATC 7 cut(s) 749, 817, 830, 936, 1151, 1164, 1916
AcyI GRCGYC 1 cut(s) 536
AfiI CCNNNNNNNGG 4 cut(s) 832, 1168, 1305, 1511
AgsI TTSAA 9 cut(s) 239, 565, 574, 703, 1269, 1319, 1349, 1357, 1501
AjiI CACGTC 1 cut(s) 1439
AjnI CCWGG 4 cut(s) 49, 463, 1298, 1717
AleI CACNNNNGTG 1 cut(s) 1202
AluBI AGCT 7 cut(s) 221, 374, 1540, 1651, 1727, 1739, 1952
AluI AGCT 7 cut(s) 221, 374, 1540, 1651, 1727, 1739, 1952
Alw21I GWGCWC 2 cut(s) 640, 1378
Alw26I GTCTC 5 cut(s) 72, 630, 670, 1567, 1654
AlwI GGATC 7 cut(s) 749, 817, 830, 936, 1151, 1164, 1916
Aor13HI TCCGGA 2 cut(s) 439, 1393
AoxI GGCC 2 cut(s) 614, 1880
ApeKI GCWGC 4 cut(s) 332, 1277, 1462, 1967
AseI ATTAAT 1 cut(s) 138
Asp700I GAANNNNTTC 2 cut(s) 417, 507
AspLEI GCGC 2 cut(s) 538, 1251
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 4 cut(s) 92, 97, 898, 1856
AsuII TTCGAA 2 cut(s) 256, 1955
AxyI CCTNAGG 1 cut(s) 453
BamHI GGATCC 2 cut(s) 822, 1156
BanI GGYRCC 3 cut(s) 535, 668, 770
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BbsI GAAGAC 2 cut(s) 581, 1616
Bbv12I GWGCWC 2 cut(s) 640, 1378
BbvI GCAGC 4 cut(s) 319, 1264, 1474, 1979
BccI CCATC 6 cut(s) 43, 260, 1669, 1780, 1936, 1988
BceAI ACGGC 1 cut(s) 682
BcgI CGANNNNNNTGC 2 cut(s) 1451, 1485
BciT130I CCWGG 4 cut(s) 51, 465, 1300, 1719
BciVI GTATCC 1 cut(s) 379
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 5 cut(s) 72, 630, 670, 1567, 1654
BfaI CTAG 6 cut(s) 6, 618, 1103, 1434, 1445, 1491
BfmI CTRYAG 2 cut(s) 423, 498
BfoI RGCGCY 2 cut(s) 539, 1252
BfuAI ACCTGC 1 cut(s) 1226
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 8 cut(s) 333, 918, 1278, 1463, 1505, 1545, 1965, 1968
BlsI GCNGC 8 cut(s) 334, 919, 1279, 1464, 1506, 1546, 1966, 1969
Bme1390I CCNGG 5 cut(s) 51, 465, 513, 1300, 1719
BmgBI CACGTC 1 cut(s) 1439
BmiI GGNNCC 8 cut(s) 537, 552, 670, 772, 824, 1158, 1591, 1963
BmrFI CCNGG 5 cut(s) 51, 465, 513, 1300, 1719
BmsI GCATC 5 cut(s) 879, 1039, 1417, 1449, 1732
BpiI GAAGAC 2 cut(s) 581, 1616
BpmI CTGGAG 2 cut(s) 537, 1556
Bpu14I TTCGAA 2 cut(s) 256, 1955
BpuEI CTTGAG 2 cut(s) 988, 1547
BpuMI CCSGG 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 4 cut(s) 286, 629, 737, 915
BsaWI WCCGGW 4 cut(s) 77, 439, 640, 1393
BsaXI ACNNNNNCTCC 6 cut(s) 1137, 1167, 1360, 1390, 1398, 1428
Bsc4I CCNNNNNNNGG 4 cut(s) 832, 1168, 1305, 1511
Bse118I RCCGGY 1 cut(s) 2016
Bse1I ACTGG 2 cut(s) 1866, 1883
Bse21I CCTNAGG 1 cut(s) 453
BseAI TCCGGA 2 cut(s) 439, 1393
BseBI CCWGG 4 cut(s) 51, 465, 1300, 1719
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 4 cut(s) 286, 629, 737, 915
BseGI GGATG 5 cut(s) 38, 448, 1402, 1680, 1714
BseLI CCNNNNNNNGG 4 cut(s) 832, 1168, 1305, 1511
BseMII CTCAG 3 cut(s) 264, 444, 545
BseNI ACTGG 2 cut(s) 1866, 1883
BseRI GAGGAG 2 cut(s) 470, 1272
BseXI GCAGC 4 cut(s) 319, 1264, 1474, 1979
Bsh1236I CGCG 1 cut(s) 917
BshFI GGCC 2 cut(s) 616, 1882
BshNI GGYRCC 3 cut(s) 535, 668, 770
BshVI ATCGAT 1 cut(s) 744
BsiHKAI GWGCWC 2 cut(s) 640, 1378
BsiSI CCGG 6 cut(s) 78, 440, 513, 641, 1394, 2017
BslFI GGGAC 2 cut(s) 848, 2011
BslI CCNNNNNNNGG 4 cut(s) 832, 1168, 1305, 1511
BsmAI GTCTC 5 cut(s) 72, 630, 670, 1567, 1654
BsmFI GGGAC 2 cut(s) 848, 2011
BsnI GGCC 2 cut(s) 616, 1882
Bsp119I TTCGAA 2 cut(s) 256, 1955
Bsp1286I GDGCHC 2 cut(s) 640, 1378
Bsp13I TCCGGA 2 cut(s) 439, 1393
Bsp19I CCATGG 1 cut(s) 629
BspANI GGCC 2 cut(s) 616, 1882
BspCNI CTCAG 3 cut(s) 265, 445, 544
BspDI ATCGAT 1 cut(s) 744
BspEI TCCGGA 2 cut(s) 439, 1393
BspFNI CGCG 1 cut(s) 917
BspHI TCATGA 2 cut(s) 933, 1528
BspLI GGNNCC 8 cut(s) 537, 552, 670, 772, 824, 1158, 1591, 1963
BspMI ACCTGC 1 cut(s) 1226
BspPI GGATC 7 cut(s) 749, 817, 830, 936, 1151, 1164, 1916
BspT104I TTCGAA 2 cut(s) 256, 1955
BspT107I GGYRCC 3 cut(s) 535, 668, 770
BsrFI RCCGGY 1 cut(s) 2016
BsrI ACTGG 2 cut(s) 1866, 1883
BssAI RCCGGY 1 cut(s) 2016
BssECI CCNNGG 4 cut(s) 286, 629, 737, 915
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 286, 629
Bst2UI CCWGG 4 cut(s) 51, 465, 1300, 1719
Bst4CI ACNGT 3 cut(s) 715, 1204, 1914
Bst6I CTCTTC 3 cut(s) 51, 1984, 2036
BstACI GRCGYC 1 cut(s) 536
BstBI TTCGAA 2 cut(s) 256, 1955
BstC8I GCNNGC 2 cut(s) 1023, 1542
BstDEI CTNAG 8 cut(s) 273, 453, 531, 786, 1034, 1077, 1120, 1748
BstDSI CCRYGG 2 cut(s) 629, 915
BstF5I GGATG 5 cut(s) 38, 448, 1402, 1680, 1714
BstFNI CGCG 1 cut(s) 917
BstH2I RGCGCY 2 cut(s) 539, 1252
BstHHI GCGC 2 cut(s) 538, 1251
BstMAI GTCTC 5 cut(s) 72, 630, 670, 1567, 1654
BstNI CCWGG 4 cut(s) 51, 465, 1300, 1719
BstNSI RCATGY 3 cut(s) 65, 625, 1025
BstSCI CCNGG 5 cut(s) 49, 463, 511, 1298, 1717
BstSFI CTRYAG 2 cut(s) 423, 498
BstUI CGCG 1 cut(s) 917
BstV1I GCAGC 4 cut(s) 319, 1264, 1474, 1979
BstV2I GAAGAC 2 cut(s) 581, 1616
BstX2I RGATCY 3 cut(s) 822, 928, 1156
BstXI CCANNNNNNTGG 1 cut(s) 57
BstYI RGATCY 3 cut(s) 822, 928, 1156
Bsu15I ATCGAT 1 cut(s) 744
Bsu36I CCTNAGG 1 cut(s) 453
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 616, 1882
BsuTUI ATCGAT 1 cut(s) 744
BtgI CCRYGG 2 cut(s) 629, 915
BtrI CACGTC 1 cut(s) 1439
BtsCI GGATG 5 cut(s) 38, 448, 1402, 1680, 1714
BtsI GCAGTG 1 cut(s) 1182
BtsIMutI CAGTG 5 cut(s) 720, 1182, 1200, 1337, 1845
BveI ACCTGC 1 cut(s) 1226
Cac8I GCNNGC 2 cut(s) 1023, 1542
CciI TCATGA 2 cut(s) 933, 1528
CfoI GCGC 2 cut(s) 538, 1251
Cfr10I RCCGGY 1 cut(s) 2016
Cfr42I CCGCGG 1 cut(s) 918
ClaI ATCGAT 1 cut(s) 744
DdeI CTNAG 8 cut(s) 273, 453, 531, 786, 1034, 1077, 1120, 1748
DinI GGCGCC 1 cut(s) 537
Eam1104I CTCTTC 3 cut(s) 51, 1984, 2036
EarI CTCTTC 3 cut(s) 51, 1984, 2036
Eco130I CCWWGG 2 cut(s) 286, 629
Eco32I GATATC 1 cut(s) 991
Eco81I CCTNAGG 1 cut(s) 453
EcoRII CCWGG 4 cut(s) 49, 463, 1298, 1717
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 2 cut(s) 286, 629
EcoT22I ATGCAT 1 cut(s) 686
EgeI GGCGCC 1 cut(s) 537
EheI GGCGCC 1 cut(s) 537
ErhI CCWWGG 2 cut(s) 286, 629
FalI AAGNNNNNCTT 2 cut(s) 1349, 1381
FaqI GGGAC 2 cut(s) 848, 2011
FauI CCCGC 2 cut(s) 922, 1896
FbaI TGATCA 1 cut(s) 757
Fnu4HI GCNGC 8 cut(s) 333, 918, 1278, 1463, 1505, 1545, 1965, 1968
FokI GGATG 5 cut(s) 25, 455, 1409, 1687, 1701
Fsp4HI GCNGC 8 cut(s) 333, 918, 1278, 1463, 1505, 1545, 1965, 1968
FspBI CTAG 6 cut(s) 6, 618, 1103, 1434, 1445, 1491
GlaI GCGC 2 cut(s) 537, 1250
GluI GCNGC 8 cut(s) 333, 918, 1278, 1463, 1505, 1545, 1965, 1968
GsuI CTGGAG 2 cut(s) 537, 1556
HaeII RGCGCY 2 cut(s) 539, 1252
HaeIII GGCC 2 cut(s) 616, 1882
HapII CCGG 6 cut(s) 78, 440, 513, 641, 1394, 2017
HhaI GCGC 2 cut(s) 538, 1251
Hin1I GRCGYC 1 cut(s) 536
Hin6I GCGC 2 cut(s) 536, 1249
HinP1I GCGC 2 cut(s) 536, 1249
HincII GTYRAC 1 cut(s) 1296
HindII GTYRAC 1 cut(s) 1296
HinfI GANTC 6 cut(s) 12, 577, 703, 1213, 1621, 1999
HpaII CCGG 6 cut(s) 78, 440, 513, 641, 1394, 2017
HphI GGTGA 4 cut(s) 92, 97, 898, 1856
Hpy166II GTNNAC 3 cut(s) 1000, 1296, 1638
Hpy188I TCNGA 5 cut(s) 274, 741, 827, 1327, 1602
Hpy8I GTNNAC 3 cut(s) 1000, 1296, 1638
HpyAV CCTTC 6 cut(s) 125, 1009, 1136, 1297, 1662, 1935
HpyCH4III ACNGT 3 cut(s) 715, 1204, 1914
HpyCH4IV ACGT 1 cut(s) 1438
HpyCH4V TGCA 8 cut(s) 315, 335, 479, 586, 684, 911, 1462, 1701
HpyF3I CTNAG 8 cut(s) 273, 453, 531, 786, 1034, 1077, 1120, 1748
HpySE526I ACGT 1 cut(s) 1438
Hsp92I GRCGYC 1 cut(s) 536
HspAI GCGC 2 cut(s) 536, 1249
KasI GGCGCC 1 cut(s) 535
Kpn2I TCCGGA 2 cut(s) 439, 1393
Ksp22I TGATCA 1 cut(s) 757
KspI CCGCGG 1 cut(s) 918
LmnI GCTCC 8 cut(s) 556, 643, 1018, 1285, 1381, 1537, 1589, 1961
Lsp1109I GCAGC 4 cut(s) 319, 1264, 1474, 1979
LweI GCATC 5 cut(s) 879, 1039, 1417, 1449, 1732
MaeI CTAG 6 cut(s) 6, 618, 1103, 1434, 1445, 1491
MaeII ACGT 1 cut(s) 1438
MaeIII GTNAC 4 cut(s) 709, 858, 1204, 1819
MboII GAAGA 8 cut(s) 38, 425, 586, 670, 730, 1369, 1616, 2001
MfeI CAATTG 2 cut(s) 581, 1496
MflI RGATCY 3 cut(s) 822, 928, 1156
MhlI GDGCHC 2 cut(s) 640, 1378
Mly113I GGCGCC 1 cut(s) 536
MlyI GAGTC 3 cut(s) 571, 1630, 1993
Mph1103I ATGCAT 1 cut(s) 686
MroI TCCGGA 2 cut(s) 439, 1393
MroXI GAANNNNTTC 2 cut(s) 417, 507
MseI TTAA 7 cut(s) 138, 155, 654, 1311, 1653, 1682, 2010
MslI CAYNNNNRTG 2 cut(s) 27, 1202
MspA1I CMGCKG 3 cut(s) 326, 557, 917
MspI CCGG 6 cut(s) 78, 440, 513, 641, 1394, 2017
MspR9I CCNGG 5 cut(s) 51, 465, 513, 1300, 1719
MunI CAATTG 2 cut(s) 581, 1496
MvaI CCWGG 4 cut(s) 51, 465, 1300, 1719
MvnI CGCG 1 cut(s) 917
NarI GGCGCC 1 cut(s) 536
NciI CCSGG 1 cut(s) 513
NcoI CCATGG 1 cut(s) 629
NlaIV GGNNCC 8 cut(s) 537, 552, 670, 772, 824, 1158, 1591, 1963
NmuCI GTSAC 3 cut(s) 709, 858, 1204
NsiI ATGCAT 1 cut(s) 686
NspI RCATGY 3 cut(s) 65, 625, 1025
NspV TTCGAA 2 cut(s) 256, 1955
OliI CACNNNNGTG 1 cut(s) 1202
PaeI GCATGC 1 cut(s) 1025
PagI TCATGA 2 cut(s) 933, 1528
PdmI GAANNNNTTC 2 cut(s) 417, 507
PfeI GAWTC 3 cut(s) 12, 703, 1213
PflFI GACNNNGTC 1 cut(s) 1440
PflMI CCANNNNNTGG 1 cut(s) 1168
PfoI TCCNGGA 2 cut(s) 511, 1717
PkrI GCNGC 8 cut(s) 334, 919, 1279, 1464, 1506, 1546, 1966, 1969
PleI GAGTC 3 cut(s) 571, 1629, 1993
PluTI GGCGCC 1 cut(s) 539
PpsI GAGTC 3 cut(s) 571, 1629, 1993
PshBI ATTAAT 1 cut(s) 138
Psp6I CCWGG 4 cut(s) 49, 463, 1298, 1717
PspGI CCWGG 4 cut(s) 49, 463, 1298, 1717
PspN4I GGNNCC 8 cut(s) 537, 552, 670, 772, 824, 1158, 1591, 1963
PsuI RGATCY 3 cut(s) 822, 928, 1156
PsyI GACNNNGTC 1 cut(s) 1440
RseI CAYNNNNRTG 2 cut(s) 27, 1202
SacII CCGCGG 1 cut(s) 918
SaqAI TTAA 7 cut(s) 138, 155, 654, 1311, 1653, 1682, 2010
SatI GCNGC 8 cut(s) 333, 918, 1278, 1463, 1505, 1545, 1965, 1968
SchI GAGTC 3 cut(s) 571, 1630, 1993
ScrFI CCNGG 5 cut(s) 51, 465, 513, 1300, 1719
SduI GDGCHC 2 cut(s) 640, 1378
SfaNI GCATC 5 cut(s) 879, 1039, 1417, 1449, 1732
SfcI CTRYAG 2 cut(s) 423, 498
SfoI GGCGCC 1 cut(s) 537
Sfr303I CCGCGG 1 cut(s) 918
SfuI TTCGAA 2 cut(s) 256, 1955
SgrBI CCGCGG 1 cut(s) 918
SmiMI CAYNNNNRTG 2 cut(s) 27, 1202
SmlI CTYRAG 2 cut(s) 1003, 1562
SmoI CTYRAG 2 cut(s) 1003, 1562
SphI GCATGC 1 cut(s) 1025
SspDI GGCGCC 1 cut(s) 535
SspI AATATT 1 cut(s) 1044
SspMI CTAG 6 cut(s) 6, 618, 1103, 1434, 1445, 1491
StyD4I CCNGG 5 cut(s) 49, 463, 511, 1298, 1717
StyI CCWWGG 2 cut(s) 286, 629
TaaI ACNGT 3 cut(s) 715, 1204, 1914
TaiI ACGT 1 cut(s) 1441
TaqI TCGA 8 cut(s) 10, 144, 256, 744, 1181, 1471, 1753, 1955
TaqII GACCGA 1 cut(s) 846
TauI GCSGC 4 cut(s) 920, 1507, 1547, 1967
TfiI GAWTC 3 cut(s) 12, 703, 1213
Tru1I TTAA 7 cut(s) 138, 155, 654, 1311, 1653, 1682, 2010
Tru9I TTAA 7 cut(s) 138, 155, 654, 1311, 1653, 1682, 2010
TscAI CASTG 5 cut(s) 720, 1182, 1207, 1337, 1845
TseFI GTSAC 3 cut(s) 709, 858, 1204
TseI GCWGC 4 cut(s) 332, 1277, 1462, 1967
Tsp45I GTSAC 3 cut(s) 709, 858, 1204
TspDTI ATGAA 4 cut(s) 913, 950, 970, 1862
TspGWI ACGGA 2 cut(s) 1223, 1972
TspRI CASTG 5 cut(s) 720, 1182, 1207, 1337, 1845
Tth111I GACNNNGTC 1 cut(s) 1440
Van91I CCANNNNNTGG 1 cut(s) 1168
VspI ATTAAT 1 cut(s) 138
XbaI TCTAGA 1 cut(s) 1433
XceI RCATGY 3 cut(s) 65, 625, 1025
XmnI GAANNNNTTC 2 cut(s) 417, 507
XspI CTAG 6 cut(s) 6, 618, 1103, 1434, 1445, 1491
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.