Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Forward (+)

9607822 .. 9608494

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCTCCTAGGCGCCCACGGCAACCCCGTATGGCTACTTCGACCAATGCCGATGAGGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTTATAGATCGAGCTCCACACCCTTATACAGTGAAGAGGAGAGAAGTTTATAAGGCTGGAGCAAGAGAGTTCAAGGGTGCCAAGGGACATCTTGATGCTTATACTTGGGCAGACAAAATGGAAAAGGCTTTTGCGAGCACAGATTTGCCAGAAGAAAGGAAGGTGAAGATGGCAGTGACTTTCCTAGATGATTCAGCACATCACTGGTGGTCGCTCGCTAGCAGGAATGTTGTGGATGCTCTGAATATGTCGTGGGAGCAGTTTAAGACACTTTTCTTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

131

Amino Acids

14.92

Weight (kDa)

8.96

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AccB1I	GGYRCC	2 cut(s)	12, 185
AcyI	GRCGYC	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw21I	GWGCWC	2 cut(s)	124, 248
AspA2I	CCTAGG	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	283
AsuNHI	GCTAGC	1 cut(s)	326
AvrII	CCTAGG	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	12, 185
BanII	GRGCYC	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
Bbv12I	GWGCWC	2 cut(s)	124, 248
BbvCI	CCTCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	35
BfaI	CTAG	3 cut(s)	9, 293, 327
BfoI	RGCGCY	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	10
BlnI	CCTAGG	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	14, 187
BmsI	GCATC	2 cut(s)	193, 334
BmtI	GCTAGC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	8, 17, 189
Bse1I	ACTGG	2 cut(s)	81, 317
Bse3DI	GCAATG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	8, 17, 189
BseGI	GGATG	2 cut(s)	112, 349
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	81, 317
BseRI	GAGGAG	1 cut(s)	160
BshNI	GGYRCC	2 cut(s)	12, 185
BsiHKAI	GWGCWC	2 cut(s)	124, 248
BslFI	GGGAC	2 cut(s)	87, 207
BsmFI	GGGAC	2 cut(s)	87, 207
Bsp1286I	GDGCHC	2 cut(s)	124, 248
Bsp143I	GATC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	14, 187
BspOI	GCTAGC	1 cut(s)	330
BspT107I	GGYRCC	2 cut(s)	12, 185
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	81, 317
BssECI	CCNNGG	3 cut(s)	8, 17, 189
BssMI	GATC	1 cut(s)	115
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	8, 189
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	13
BstC8I	GCNNGC	3 cut(s)	244, 324, 328
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	112, 349
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 19
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	112, 349
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	144, 288, 310
Cac8I	GCNNGC	3 cut(s)	244, 324, 328
CfoI	GCGC	1 cut(s)	15
CviJI	RGCY	4 cut(s)	35, 122, 164, 236
CviKI_1	RGCY	4 cut(s)	35, 122, 164, 236
DdeI	CTNAG	1 cut(s)	101
DinI	GGCGCC	1 cut(s)	14
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	8, 189
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	8, 189
EcoT38I	GRGCYC	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	14
EheI	GGCGCC	1 cut(s)	14
ErhI	CCWWGG	2 cut(s)	8, 189
FaiI	YATR	7 cut(s)	32, 98, 113, 135, 159, 210, 356
FaqI	GGGAC	2 cut(s)	87, 207
FokI	GGATG	2 cut(s)	119, 356
FriOI	GRGCYC	1 cut(s)	124
FspBI	CTAG	3 cut(s)	9, 293, 327
GlaI	GCGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	16
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 19
HpyF3I	CTNAG	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	13
HspAI	GCGC	1 cut(s)	13
KasI	GGCGCC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	3 cut(s)	127, 167, 364
LpnPI	CCDG	6 cut(s)	55, 62, 150, 270, 298, 316
LweI	GCATC	2 cut(s)	193, 334
MaeI	CTAG	3 cut(s)	9, 293, 327
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	154, 272, 286
MhlI	GDGCHC	2 cut(s)	124, 248
Mly113I	GGCGCC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	15, 49, 58, 96, 138
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	10, 19
NarI	GGCGCC	1 cut(s)	13
NdeII	GATC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	14, 187
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	299
PluTI	GGCGCC	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	14, 187
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	124, 248
SetI	ASST	3 cut(s)	69, 124, 273
SfaNI	GCATC	2 cut(s)	193, 334
SfoI	GGCGCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	201
SspDI	GGCGCC	1 cut(s)	12
SspMI	CTAG	3 cut(s)	9, 293, 327
SstI	GAGCTC	1 cut(s)	124
StyI	CCWWGG	2 cut(s)	8, 189
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	41, 118
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	3 cut(s)	144, 288, 317
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspRI	CASTG	3 cut(s)	144, 288, 317
XmaJI	CCTAGG	1 cut(s)	8
XspI	CTAG	3 cut(s)	9, 293, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.