FvH4_4g15292

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
18919368 .. 18920723
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15292.t1

Sequence Viewer

Length: 1356 bp
ATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCGGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTAGAGGCTCCAGTAGTAGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTACATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTGTTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTTGTGGCTGTGAAGTCGTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAACTGCAGGAGTTAGTGTGGATCCCCAAAAGGTTGAGGCAGTGTCGAATTGGAGAAGACCCACCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

452

Amino Acids

48.5

Weight (kDa)

7.63

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 192 - 322 1.1e-33 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 262, 571
Acc36I ACCTGC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 1240
AccII CGCG 2 cut(s) 80, 582
AccIII TCCGGA 1 cut(s) 1144
AciI CCGC 6 cut(s) 38, 80, 186, 547, 1029, 1262
AclWI GGATC 4 cut(s) 232, 677, 1300, 1313
AcoI YGGCCR 2 cut(s) 96, 128
AcuI CTGAAG 3 cut(s) 174, 403, 471
AcyI GRCGYC 3 cut(s) 259, 568, 1241
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 2 cut(s) 619, 643
AfiI CCNNNNNNNGG 3 cut(s) 155, 439, 610
AgsI TTSAA 3 cut(s) 944, 1270, 1279
AjnI CCWGG 2 cut(s) 513, 1168
AleI CACNNNNGTG 1 cut(s) 1351
AluBI AGCT 5 cut(s) 173, 203, 491, 926, 1079
AluI AGCT 5 cut(s) 173, 203, 491, 926, 1079
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 3 cut(s) 262, 753, 777
AlwI GGATC 4 cut(s) 232, 677, 1300, 1313
Aor13HI TCCGGA 1 cut(s) 1144
AoxI GGCC 2 cut(s) 96, 128
ApeKI GCWGC 6 cut(s) 89, 295, 370, 373, 376, 1037
Asp700I GAANNNNTTC 3 cut(s) 358, 1122, 1212
AspLEI GCGC 2 cut(s) 584, 1243
AspS9I GGNCC 3 cut(s) 146, 158, 450
AsuC2I CCSGG 3 cut(s) 304, 687, 1218
AsuHPI GGTGA 2 cut(s) 797, 802
AsuII TTCGAA 1 cut(s) 961
AvaII GGWCC 3 cut(s) 146, 158, 450
AxyI CCTNAGG 1 cut(s) 1158
BaeGI GKGCMC 2 cut(s) 22, 514
BalI TGGCCA 1 cut(s) 98
BamHI GGATCC 1 cut(s) 1305
BanI GGYRCC 1 cut(s) 1240
BarI GAAGNNNNNNTAC 2 cut(s) 942, 974
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 3 cut(s) 477, 1286, 1347
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 6 cut(s) 101, 307, 382, 385, 388, 1024
BccI CCATC 3 cut(s) 169, 748, 965
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 2 cut(s) 515, 1170
BciVI GTATCC 1 cut(s) 1084
BcnI CCSGG 3 cut(s) 304, 687, 1218
BcoDI GTCTC 3 cut(s) 262, 753, 777
BfaI CTAG 6 cut(s) 276, 492, 585, 711, 755, 1076
BfmI CTRYAG 3 cut(s) 1128, 1203, 1289
BfoI RGCGCY 1 cut(s) 1244
BfuAI ACCTGC 1 cut(s) 280
BfuI GTATCC 1 cut(s) 1084
BisI GCNGC 6 cut(s) 90, 296, 371, 374, 377, 1038
BlsI GCNGC 6 cut(s) 91, 297, 372, 375, 378, 1039
Bme1390I CCNGG 5 cut(s) 304, 515, 687, 1170, 1218
Bme18I GGWCC 3 cut(s) 146, 158, 450
BmgT120I GGNCC 3 cut(s) 146, 158, 450
BmiI GGNNCC 8 cut(s) 148, 159, 281, 499, 691, 1242, 1257, 1307
BmrFI CCNGG 5 cut(s) 304, 515, 687, 1170, 1218
BmrI ACTGGG 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 3 cut(s) 477, 1286, 1347
BplI GAGNNNNNCTC 2 cut(s) 439, 471
BpmI CTGGAG 3 cut(s) 484, 609, 1242
Bpu14I TTCGAA 1 cut(s) 961
BpuMI CCSGG 3 cut(s) 304, 687, 1218
BsaHI GRCGYC 3 cut(s) 259, 568, 1241
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 5 cut(s) 93, 331, 513, 514, 991
BsaWI WCCGGW 2 cut(s) 782, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 1286, 1316
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 439, 610
Bse1I ACTGG 3 cut(s) 150, 283, 501
Bse21I CCTNAGG 1 cut(s) 1158
BseAI TCCGGA 1 cut(s) 1144
BseBI CCWGG 2 cut(s) 515, 1170
BseDI CCNNGG 5 cut(s) 93, 331, 513, 514, 991
BseGI GGATG 4 cut(s) 161, 182, 740, 1153
BseLI CCNNNNNNNGG 3 cut(s) 155, 439, 610
BseMII CTCAG 5 cut(s) 458, 482, 557, 1149, 1250
BseNI ACTGG 3 cut(s) 150, 283, 501
BseRI GAGGAG 1 cut(s) 1175
BseSI GKGCMC 2 cut(s) 22, 514
BseXI GCAGC 6 cut(s) 101, 307, 382, 385, 388, 1024
BseYI CCCAGC 1 cut(s) 603
Bsh1236I CGCG 2 cut(s) 80, 582
BshFI GGCC 2 cut(s) 98, 130
BshNI GGYRCC 1 cut(s) 1240
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 5 cut(s) 303, 687, 783, 1145, 1218
BslFI GGGAC 3 cut(s) 132, 352, 555
BslI CCNNNNNNNGG 3 cut(s) 155, 439, 610
BsmAI GTCTC 3 cut(s) 262, 753, 777
BsmBI CGTCTC 1 cut(s) 753
BsmFI GGGAC 3 cut(s) 132, 352, 555
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 2 cut(s) 98, 130
Bso31I GGTCTC 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 961
Bsp1286I GDGCHC 3 cut(s) 22, 127, 514
Bsp13I TCCGGA 1 cut(s) 1144
Bsp143I GATC 5 cut(s) 224, 682, 891, 1230, 1305
Bsp19I CCATGG 2 cut(s) 93, 331
BspACI CCGC 6 cut(s) 38, 80, 186, 547, 1029, 1262
BspANI GGCC 2 cut(s) 98, 130
BspCNI CTCAG 5 cut(s) 457, 481, 556, 1150, 1249
BspEI TCCGGA 1 cut(s) 1144
BspFNI CGCG 2 cut(s) 80, 582
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 8 cut(s) 148, 159, 281, 499, 691, 1242, 1257, 1307
BspMAI CTGCAG 1 cut(s) 1293
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 4 cut(s) 232, 677, 1300, 1313
BspT104I TTCGAA 1 cut(s) 961
BspT107I GGYRCC 1 cut(s) 1240
BspTNI GGTCTC 1 cut(s) 262
BsrI ACTGG 3 cut(s) 150, 283, 501
BssECI CCNNGG 5 cut(s) 93, 331, 513, 514, 991
BssMI GATC 5 cut(s) 224, 682, 891, 1230, 1305
BssNI GRCGYC 3 cut(s) 259, 568, 1241
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 3 cut(s) 93, 331, 991
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 515, 1170
Bst4CI ACNGT 1 cut(s) 1353
Bst6I CTCTTC 1 cut(s) 756
BstACI GRCGYC 3 cut(s) 259, 568, 1241
BstBI TTCGAA 1 cut(s) 961
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 5 cut(s) 444, 468, 543, 1158, 1236
BstDSI CCRYGG 2 cut(s) 93, 331
BstF5I GGATG 4 cut(s) 161, 182, 740, 1153
BstFNI CGCG 2 cut(s) 80, 582
BstH2I RGCGCY 1 cut(s) 1244
BstHHI GCGC 2 cut(s) 584, 1243
BstKTI GATC 5 cut(s) 227, 685, 894, 1233, 1308
BstMAI GTCTC 3 cut(s) 262, 753, 777
BstMBI GATC 5 cut(s) 224, 682, 891, 1230, 1305
BstMWI GCNNNNNNNGC 9 cut(s) 86, 95, 304, 376, 728, 923, 1037, 1076, 1174
BstNI CCWGG 2 cut(s) 515, 1170
BstNSI RCATGY 2 cut(s) 596, 770
BstSCI CCNGG 5 cut(s) 302, 513, 685, 1168, 1216
BstSFI CTRYAG 3 cut(s) 1128, 1203, 1289
BstSLI GKGCMC 2 cut(s) 22, 514
BstUI CGCG 2 cut(s) 80, 582
BstV1I GCAGC 6 cut(s) 101, 307, 382, 385, 388, 1024
BstV2I GAAGAC 3 cut(s) 477, 1286, 1347
BstX2I RGATCY 1 cut(s) 1305
BstYI RGATCY 1 cut(s) 1305
Bsu36I CCTNAGG 1 cut(s) 1158
BsuI GTATCC 1 cut(s) 1084
BsuRI GGCC 2 cut(s) 98, 130
BtgI CCRYGG 2 cut(s) 93, 331
BtsCI GGATG 4 cut(s) 161, 182, 740, 1153
BtsI GCAGTG 2 cut(s) 526, 1331
BtsIMutI CAGTG 3 cut(s) 526, 1331, 1349
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 666
CciI TCATGA 1 cut(s) 409
CfoI GCGC 2 cut(s) 584, 1243
Cfr13I GGNCC 3 cut(s) 146, 158, 450
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 618, 642
CviQI GTAC 2 cut(s) 618, 642
DdeI CTNAG 5 cut(s) 444, 468, 543, 1158, 1236
DinI GGCGCC 1 cut(s) 1242
DpnI GATC 5 cut(s) 226, 684, 893, 1232, 1307
DpnII GATC 5 cut(s) 224, 682, 891, 1230, 1305
DraIII CACNNNGTG 1 cut(s) 26
EaeI YGGCCR 2 cut(s) 96, 128
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco130I CCWWGG 3 cut(s) 93, 331, 991
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 146, 158, 450
Eco57I CTGAAG 3 cut(s) 174, 403, 471
Eco81I CCTNAGG 1 cut(s) 1158
EcoRII CCWGG 2 cut(s) 513, 1168
EcoT14I CCWWGG 3 cut(s) 93, 331, 991
EgeI GGCGCC 1 cut(s) 1242
EheI GGCGCC 1 cut(s) 1242
ErhI CCWWGG 3 cut(s) 93, 331, 991
Esp3I CGTCTC 1 cut(s) 753
FaqI GGGAC 3 cut(s) 132, 352, 555
FauI CCCGC 1 cut(s) 540
Fnu4HI GCNGC 6 cut(s) 90, 296, 371, 374, 377, 1038
FokI GGATG 4 cut(s) 148, 169, 727, 1160
Fsp4HI GCNGC 6 cut(s) 90, 296, 371, 374, 377, 1038
FspBI CTAG 6 cut(s) 276, 492, 585, 711, 755, 1076
GlaI GCGC 2 cut(s) 583, 1242
GluI GCNGC 6 cut(s) 90, 296, 371, 374, 377, 1038
GsaI CCCAGC 1 cut(s) 607
GsuI CTGGAG 3 cut(s) 484, 609, 1242
HaeII RGCGCY 1 cut(s) 1244
HaeIII GGCC 2 cut(s) 98, 130
HapII CCGG 5 cut(s) 303, 687, 783, 1145, 1218
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 584, 1243
Hin1I GRCGYC 3 cut(s) 259, 568, 1241
Hin6I GCGC 2 cut(s) 582, 1241
HinP1I GCGC 2 cut(s) 582, 1241
HinfI GANTC 3 cut(s) 104, 577, 1282
HpaII CCGG 5 cut(s) 303, 687, 783, 1145, 1218
HphI GGTGA 2 cut(s) 797, 802
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 3 cut(s) 76, 447, 533
Hpy188III TCNNGA 6 cut(s) 410, 421, 626, 968, 1145, 1157
Hpy8I GTNNAC 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 246, 830
HpyCH4III ACNGT 1 cut(s) 1353
HpyCH4IV ACGT 3 cut(s) 259, 568, 644
HpyCH4V TGCA 5 cut(s) 89, 1020, 1040, 1184, 1291
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 95, 304, 376, 728, 923, 1037, 1076, 1174
HpyF3I CTNAG 5 cut(s) 444, 468, 543, 1158, 1236
HpySE526I ACGT 3 cut(s) 259, 568, 644
Hsp92I GRCGYC 3 cut(s) 259, 568, 1241
HspAI GCGC 2 cut(s) 582, 1241
KasI GGCGCC 1 cut(s) 1240
Kpn2I TCCGGA 1 cut(s) 1144
Kzo9I GATC 5 cut(s) 224, 682, 891, 1230, 1305
LmnI GCTCC 4 cut(s) 279, 503, 689, 1261
Lsp1109I GCAGC 6 cut(s) 101, 307, 382, 385, 388, 1024
MaeI CTAG 6 cut(s) 276, 492, 585, 711, 755, 1076
MaeII ACGT 3 cut(s) 259, 568, 644
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 226, 684, 893, 1232, 1307
MboI GATC 5 cut(s) 224, 682, 891, 1230, 1305
MboII GAAGA 5 cut(s) 477, 743, 1130, 1291, 1352
MflI RGATCY 1 cut(s) 1305
MhlI GDGCHC 3 cut(s) 22, 127, 514
MlsI TGGCCA 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 98
Mly113I GGCGCC 1 cut(s) 1241
MlyI GAGTC 3 cut(s) 113, 571, 1276
Mox20I TGGCCA 1 cut(s) 98
MroI TCCGGA 1 cut(s) 1144
MroXI GAANNNNTTC 3 cut(s) 358, 1122, 1212
MscI TGGCCA 1 cut(s) 98
MseI TTAA 4 cut(s) 650, 677, 843, 860
MslI CAYNNNNRTG 2 cut(s) 732, 1351
Msp20I TGGCCA 1 cut(s) 98
MspA1I CMGCKG 4 cut(s) 203, 547, 1031, 1262
MspI CCGG 5 cut(s) 303, 687, 783, 1145, 1218
MspR9I CCNGG 5 cut(s) 304, 515, 687, 1170, 1218
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 2 cut(s) 515, 1170
MvnI CGCG 2 cut(s) 80, 582
MwoI GCNNNNNNNGC 9 cut(s) 86, 95, 304, 376, 728, 923, 1037, 1076, 1174
NarI GGCGCC 1 cut(s) 1241
NciI CCSGG 3 cut(s) 304, 687, 1218
NcoI CCATGG 2 cut(s) 93, 331
NdeII GATC 5 cut(s) 224, 682, 891, 1230, 1305
NlaIV GGNNCC 8 cut(s) 148, 159, 281, 499, 691, 1242, 1257, 1307
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 2 cut(s) 596, 770
NspV TTCGAA 1 cut(s) 961
OliI CACNNNNGTG 1 cut(s) 1351
PagI TCATGA 1 cut(s) 409
PasI CCCWGGG 1 cut(s) 514
PctI GAATGC 1 cut(s) 697
PdmI GAANNNNTTC 3 cut(s) 358, 1122, 1212
PfoI TCCNGGA 2 cut(s) 685, 1216
PkrI GCNGC 6 cut(s) 91, 297, 372, 375, 378, 1039
PleI GAGTC 3 cut(s) 112, 571, 1276
PluTI GGCGCC 1 cut(s) 1244
PpsI GAGTC 3 cut(s) 112, 571, 1276
Psp6I CCWGG 2 cut(s) 513, 1168
PspFI CCCAGC 1 cut(s) 603
PspGI CCWGG 2 cut(s) 513, 1168
PspN4I GGNNCC 8 cut(s) 148, 159, 281, 499, 691, 1242, 1257, 1307
PspPI GGNCC 3 cut(s) 146, 158, 450
PstI CTGCAG 1 cut(s) 1293
PsuI RGATCY 1 cut(s) 1305
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 619, 643
RsaNI GTAC 2 cut(s) 618, 642
RseI CAYNNNNRTG 2 cut(s) 732, 1351
SaqAI TTAA 4 cut(s) 650, 677, 843, 860
SatI GCNGC 6 cut(s) 90, 296, 371, 374, 377, 1038
Sau3AI GATC 5 cut(s) 224, 682, 891, 1230, 1305
Sau96I GGNCC 3 cut(s) 146, 158, 450
SchI GAGTC 3 cut(s) 113, 571, 1276
ScrFI CCNGG 5 cut(s) 304, 515, 687, 1170, 1218
SduI GDGCHC 3 cut(s) 22, 127, 514
SfcI CTRYAG 3 cut(s) 1128, 1203, 1289
SfoI GGCGCC 1 cut(s) 1242
SfuI TTCGAA 1 cut(s) 961
SinI GGWCC 3 cut(s) 146, 158, 450
SmiMI CAYNNNNRTG 2 cut(s) 732, 1351
SsiI CCGC 6 cut(s) 38, 80, 186, 547, 1029, 1262
SspDI GGCGCC 1 cut(s) 1240
SspMI CTAG 6 cut(s) 276, 492, 585, 711, 755, 1076
StyD4I CCNGG 5 cut(s) 302, 513, 685, 1168, 1216
StyI CCWWGG 3 cut(s) 93, 331, 991
TaaI ACNGT 1 cut(s) 1353
TaiI ACGT 3 cut(s) 262, 571, 647
TaqI TCGA 3 cut(s) 849, 961, 1330
TaqII GACCGA 1 cut(s) 517
Tru1I TTAA 4 cut(s) 650, 677, 843, 860
Tru9I TTAA 4 cut(s) 650, 677, 843, 860
TscAI CASTG 3 cut(s) 526, 1331, 1356
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 6 cut(s) 89, 295, 370, 373, 376, 1037
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 5 cut(s) 74, 168, 186, 690, 694
TspRI CASTG 3 cut(s) 526, 1331, 1356
VpaK11BI GGWCC 3 cut(s) 146, 158, 450
XceI RCATGY 2 cut(s) 596, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmnI GAANNNNTTC 3 cut(s) 358, 1122, 1212
XspI CTAG 6 cut(s) 276, 492, 585, 711, 755, 1076
ZraI GACGTC 2 cut(s) 260, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.