FvH4_4g21031

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
24187192 .. 24188646
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21031.t1

Sequence Viewer

Length: 1455 bp
ATGGGGAAGGTCAAGGGAGCGGACAAATCCAACGTCGATGAGCTTGAGGTTTCGGGTGAGCTTGCTCATCTTGAGCTGGAGCTACAGATCCATCGCGATGAGACTAGTAGCCGTCTCGACGCTATGCAACAATCCTTGCAGTCCTCTCTACATACTGATATGCAAGCTAACTTCTCTGATTTTCGATCTGTTCTTATGGAAGAGTTCCGCCAACAACTAAACTCGTTTGCCAGTACTTACATCACTGCTGCTAACCCCCAATCGGGTCCTCGGAGCTCTCAGGGATTCAATAACCAGAACTCTGTTAGTTTTGGTTCAGTGGATTCACCTGTGTTGCAAGCCAGATCTGTGCTTGAGAGTTCTGCCTCATCTTCAACCATGGCCAGATCTGAGGGATCCTCAACTAGGGTTCATCATCCAGGGGGTAATGATGCTCAAACCTTTCATAACTCTCTTAATGCAGTACTTGAGAATGAGGTGGGGGTTAATGGGTCTAGTATTTTTGTTGGAGGGTTAAATGTGAATATTGGTAATCCTCTTGGCCCTCAGATGGATTTGCAAGAGAGGAATAAGAGGGGCAAGAATGTTGCAGGTGCTATGGGGTTAGGCTTTAATGCTATTCCATTTTCTCCGAGAGGTAACTCTCCACCTACCTTTGCTCAGAATGTTTGTTCACAGCCTATGGTCACTATGGCTAATGACTCATTCAACATGAGTTATTCTGGTCCTTACCAAACTTCAACCATCAGTTGTTCACAACCTCTAAGGCCGTCTGATTCATTTCAGAATTTTTCTCTAGCAGGAGCTAAACCTACTATTGTTCACCCTACTTATACCATCACTACTGTTGAACAACAACAACACACTATACACCAACAACCTCAGCCTAAATTTCAATCTCAATTCCACCATCAACAACATTTTTCCCAAACCTTTCCCCTGCAACACCAGCAAACTTTTGGTCCTCCAGATCCAAATCACTTTCACTTGAACCAACAACAAATACCACTCTATCATCCTAATATTGATCCTAACCTCCCTACGATGAAGCATATGCAATTGGAATTAGCTGTTTTCAGTGGTGGTGATCCTATAGAATGGTTGAATAAGGTTGAACAGTACTTTGAGTTTTATCAAATTCCGGAAGAGAGGAAGTTAAGCCTAGCCACTATGCACTTAATTGAGAGAGCATCTGATAGGTGGTATACTTTCAAGCATGAGTTTCCACATACTTGGCAAGGCTTGATAGATTTGTTATTAAGAGAATTTAGCAGTTACAATAGGACTGATTATCAGGCTCTTTTGGCAAGGATGAACCAGAATGGTAGAGTGGAGCAGTACATGGAGGAATTCACAAGAATGTCAAGAAGAGCTCCTGGGTTGTCAACTGAATTGCTGGTGTCTTTTTTCATAGAAGGGTTACGAGAAGATCTTAGAAGTGATGTCATAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

485

Amino Acids

54.46

Weight (kDa)

5.84

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 388 - 476 6.9e-10 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 1205
AccII CGCG 1 cut(s) 96
AccIII TCCGGA 1 cut(s) 1141
AciI CCGC 2 cut(s) 20, 208
AclWI GGATC 6 cut(s) 82, 390, 403, 965, 1022, 1082
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 5 cut(s) 787, 890, 1137, 1265, 1349
AfaI GTAC 4 cut(s) 235, 465, 1121, 1340
AfiI CCNNNNNNNGG 4 cut(s) 262, 263, 405, 550
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 2 cut(s) 418, 1375
AluBI AGCT 9 cut(s) 43, 61, 76, 82, 167, 276, 806, 1070, 1373
AluI AGCT 9 cut(s) 43, 61, 76, 82, 167, 276, 806, 1070, 1373
Alw21I GWGCWC 2 cut(s) 278, 1375
Alw26I GTCTC 2 cut(s) 95, 119
AlwI GGATC 6 cut(s) 82, 390, 403, 965, 1022, 1082
Aor13HI TCCGGA 1 cut(s) 1141
AoxI GGCC 3 cut(s) 381, 541, 767
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 5 cut(s) 787, 890, 1137, 1265, 1349
ArsI GACNNNNNNTTYG 4 cut(s) 18, 50, 946, 978
AspS9I GGNCC 4 cut(s) 266, 542, 725, 962
AsuHPI GGTGA 4 cut(s) 68, 318, 815, 1097
AvaII GGWCC 3 cut(s) 266, 725, 962
BalI TGGCCA 1 cut(s) 383
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 278, 1375
Bbv12I GWGCWC 2 cut(s) 278, 1375
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 1 cut(s) 235
BccI CCATC 5 cut(s) 99, 544, 752, 845, 918
BceAI ACGGC 2 cut(s) 96, 754
BciT130I CCWGG 2 cut(s) 420, 1377
BcoDI GTCTC 2 cut(s) 95, 119
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 5 cut(s) 105, 405, 495, 797, 1163
BfmI CTRYAG 2 cut(s) 83, 1092
BfuAI ACCTGC 1 cut(s) 581
BglII AGATCT 3 cut(s) 344, 386, 1429
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmcAI AGTACT 3 cut(s) 235, 465, 1121
Bme1390I CCNGG 2 cut(s) 420, 1377
Bme18I GGWCC 3 cut(s) 266, 725, 962
BmgT120I GGNCC 4 cut(s) 266, 542, 725, 962
BmiI GGNNCC 2 cut(s) 267, 397
BmrFI CCNGG 2 cut(s) 420, 1377
BmsI GCATC 2 cut(s) 421, 1199
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 2 cut(s) 98, 951
Bpu10I CCTNAGC 1 cut(s) 882
BpuEI CTTGAG 4 cut(s) 65, 92, 374, 488
BsaBI GATNNNNATC 1 cut(s) 975
BsaJI CCNNGG 4 cut(s) 269, 378, 419, 1376
BsaWI WCCGGW 1 cut(s) 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 263, 405, 550
Bse1I ACTGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 975
BseAI TCCGGA 1 cut(s) 1141
BseBI CCWGG 2 cut(s) 420, 1377
BseDI CCNNGG 4 cut(s) 269, 378, 419, 1376
BseGI GGATG 3 cut(s) 415, 1015, 1317
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 4 cut(s) 262, 263, 405, 550
BseMII CTCAG 5 cut(s) 293, 381, 560, 674, 896
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 383, 543, 769
BsiHKAI GWGCWC 2 cut(s) 278, 1375
BsiSI CCGG 1 cut(s) 1142
BslI CCNNNNNNNGG 4 cut(s) 262, 263, 405, 550
BsmAI GTCTC 2 cut(s) 95, 119
BsmBI CGTCTC 1 cut(s) 119
BsnI GGCC 3 cut(s) 383, 543, 769
Bsp1286I GDGCHC 2 cut(s) 278, 1375
Bsp13I TCCGGA 1 cut(s) 1141
Bsp143I GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
Bsp19I CCATGG 1 cut(s) 378
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 2 cut(s) 20, 208
BspANI GGCC 3 cut(s) 383, 543, 769
BspCNI CTCAG 5 cut(s) 292, 382, 559, 673, 895
BspEI TCCGGA 1 cut(s) 1141
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 267, 397
BspMI ACCTGC 1 cut(s) 581
BspPI GGATC 6 cut(s) 82, 390, 403, 965, 1022, 1082
BspQI GCTCTTC 1 cut(s) 1363
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 269, 378, 419, 1376
BssMI GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
BssNAI GTATAC 1 cut(s) 1206
BssT1I CCWWGG 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 1206
Bst2UI CCWGG 2 cut(s) 420, 1377
Bst4CI ACNGT 2 cut(s) 847, 1119
Bst6I CTCTTC 3 cut(s) 195, 1140, 1363
BstC8I GCNNGC 3 cut(s) 63, 165, 339
BstDEI CTNAG 8 cut(s) 279, 390, 546, 660, 764, 882, 1433, 1452
BstDSI CCRYGG 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 415, 1015, 1317
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 9 cut(s) 90, 188, 347, 389, 398, 973, 1030, 1090, 1432
BstMAI GTCTC 2 cut(s) 95, 119
BstMBI GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
BstMWI GCNNNNNNNGC 2 cut(s) 949, 1304
BstNI CCWGG 2 cut(s) 420, 1377
BstSCI CCNGG 2 cut(s) 418, 1375
BstSFI CTRYAG 2 cut(s) 83, 1092
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 6 cut(s) 87, 344, 386, 395, 970, 1429
BstXI CCANNNNNNTGG 1 cut(s) 1233
BstYI RGATCY 6 cut(s) 87, 344, 386, 395, 970, 1429
BstZ17I GTATAC 1 cut(s) 1206
BsuRI GGCC 3 cut(s) 383, 543, 769
BtgI CCRYGG 1 cut(s) 378
BtgZI GCGATG 2 cut(s) 77, 111
BtsCI GGATG 3 cut(s) 415, 1015, 1317
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 243, 324, 1084
BtuMI TCGCGA 1 cut(s) 96
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 3 cut(s) 63, 165, 339
Cfr13I GGNCC 4 cut(s) 266, 542, 725, 962
CseI GACGC 1 cut(s) 128
Csp6I GTAC 4 cut(s) 234, 464, 1120, 1339
CviAII CATG 4 cut(s) 379, 712, 1217, 1342
CviQI GTAC 4 cut(s) 234, 464, 1120, 1339
DdeI CTNAG 8 cut(s) 279, 390, 546, 660, 764, 882, 1433, 1452
DpnI GATC 9 cut(s) 89, 187, 346, 388, 397, 972, 1029, 1089, 1431
DpnII GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 3 cut(s) 195, 1140, 1363
EarI CTCTTC 3 cut(s) 195, 1140, 1363
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 2 cut(s) 276, 1373
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 278, 1375
Eco47I GGWCC 3 cut(s) 266, 725, 962
Eco53kI GAGCTC 2 cut(s) 276, 1373
EcoICRI GAGCTC 2 cut(s) 276, 1373
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 1349
EcoRII CCWGG 2 cut(s) 418, 1375
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 278, 1375
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 382, 715, 1220, 1345
FatI CATG 4 cut(s) 378, 711, 1216, 1341
FauNDI CATATG 1 cut(s) 1053
FblI GTMKAC 1 cut(s) 1205
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 3 cut(s) 402, 1002, 1324
FriOI GRGCYC 2 cut(s) 278, 1375
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 5 cut(s) 105, 405, 495, 797, 1163
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 2 cut(s) 98, 951
HaeIII GGCC 3 cut(s) 383, 543, 769
HapII CCGG 1 cut(s) 1142
HgaI GACGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 382, 715, 1220, 1345
HincII GTYRAC 1 cut(s) 1386
HindII GTYRAC 1 cut(s) 1386
HinfI GANTC 4 cut(s) 285, 323, 701, 776
HpaII CCGG 1 cut(s) 1142
HphI GGTGA 4 cut(s) 68, 318, 815, 1097
Hpy166II GTNNAC 5 cut(s) 674, 755, 823, 1206, 1386
Hpy188I TCNGA 9 cut(s) 178, 273, 391, 549, 633, 663, 775, 786, 1195
Hpy188III TCNNGA 6 cut(s) 71, 95, 116, 968, 1142, 1365
Hpy8I GTNNAC 5 cut(s) 674, 755, 823, 1206, 1386
Hpy99I CGWCG 2 cut(s) 38, 122
HpyAV CCTTC 1 cut(s) 1409
HpyCH4III ACNGT 2 cut(s) 847, 1119
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 949, 1304
HpyF3I CTNAG 8 cut(s) 279, 390, 546, 660, 764, 882, 1433, 1452
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 4 cut(s) 382, 715, 1220, 1345
Kpn2I TCCGGA 1 cut(s) 1141
Kzo9I GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
LguI GCTCTTC 1 cut(s) 1363
LmnI GCTCC 6 cut(s) 17, 79, 273, 803, 1333, 1378
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 421, 1199
MaeI CTAG 5 cut(s) 105, 405, 495, 797, 1163
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 638, 685, 1274, 1419
MalI GATC 9 cut(s) 89, 187, 346, 388, 397, 972, 1029, 1089, 1431
MbiI CCGCTC 1 cut(s) 20
MboI GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
MboII GAAGA 5 cut(s) 212, 363, 1157, 1380, 1439
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 6 cut(s) 87, 344, 386, 395, 970, 1429
MhlI GDGCHC 2 cut(s) 278, 1375
MlsI TGGCCA 1 cut(s) 383
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 2 cut(s) 54, 487
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 1141
MscI TGGCCA 1 cut(s) 383
MseI TTAA 7 cut(s) 456, 486, 515, 612, 1157, 1178, 1259
MslI CAYNNNNRTG 2 cut(s) 96, 1358
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 1 cut(s) 1142
MspR9I CCNGG 2 cut(s) 420, 1377
MunI CAATTG 1 cut(s) 1058
MvaI CCWGG 2 cut(s) 420, 1377
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 949, 1304
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 1053
NdeII GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
NlaIII CATG 4 cut(s) 382, 715, 1220, 1345
NlaIV GGNNCC 2 cut(s) 267, 397
NmuCI GTSAC 1 cut(s) 685
NruI TCGCGA 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 1363
PfeI GAWTC 3 cut(s) 285, 323, 776
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 695
PpsI GAGTC 1 cut(s) 695
PpuMI RGGWCCY 1 cut(s) 266
Psp124BI GAGCTC 2 cut(s) 278, 1375
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 418, 1375
PspGI CCWGG 2 cut(s) 418, 1375
PspN4I GGNNCC 2 cut(s) 267, 397
PspPI GGNCC 4 cut(s) 266, 542, 725, 962
PspPPI RGGWCCY 1 cut(s) 266
PsuI RGATCY 6 cut(s) 87, 344, 386, 395, 970, 1429
RruI TCGCGA 1 cut(s) 96
RsaI GTAC 4 cut(s) 235, 465, 1121, 1340
RsaNI GTAC 4 cut(s) 234, 464, 1120, 1339
RseI CAYNNNNRTG 2 cut(s) 96, 1358
SacI GAGCTC 2 cut(s) 278, 1375
SapI GCTCTTC 1 cut(s) 1363
SaqAI TTAA 7 cut(s) 456, 486, 515, 612, 1157, 1178, 1259
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 9 cut(s) 87, 185, 344, 386, 395, 970, 1027, 1087, 1429
Sau96I GGNCC 4 cut(s) 266, 542, 725, 962
ScaI AGTACT 3 cut(s) 235, 465, 1121
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 2 cut(s) 420, 1377
SduI GDGCHC 2 cut(s) 278, 1375
SfaNI GCATC 2 cut(s) 421, 1199
SfcI CTRYAG 2 cut(s) 83, 1092
SinI GGWCC 3 cut(s) 266, 725, 962
SmiMI CAYNNNNRTG 2 cut(s) 96, 1358
SmlI CTYRAG 4 cut(s) 44, 71, 353, 467
SmoI CTYRAG 4 cut(s) 44, 71, 353, 467
SpeI ACTAGT 1 cut(s) 104
SsiI CCGC 2 cut(s) 20, 208
SspI AATATT 2 cut(s) 526, 1024
SspMI CTAG 5 cut(s) 105, 405, 495, 797, 1163
SstI GAGCTC 2 cut(s) 278, 1375
StyD4I CCNGG 2 cut(s) 418, 1375
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 847, 1119
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 36, 117, 184
TatI WGTACW 4 cut(s) 233, 463, 1119, 1338
TfiI GAWTC 3 cut(s) 285, 323, 776
Tru1I TTAA 7 cut(s) 456, 486, 515, 612, 1157, 1178, 1259
Tru9I TTAA 7 cut(s) 456, 486, 515, 612, 1157, 1178, 1259
TscAI CASTG 3 cut(s) 250, 324, 1084
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 6 cut(s) 401, 434, 768, 1061, 1328, 1399
TspRI CASTG 3 cut(s) 250, 324, 1084
VpaK11BI GGWCC 3 cut(s) 266, 725, 962
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 5 cut(s) 787, 890, 1137, 1265, 1349
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 1205
XspI CTAG 5 cut(s) 105, 405, 495, 797, 1163
ZrmI AGTACT 3 cut(s) 235, 465, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.