Rw1G009130
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000094
Physical Location & Seq
Reverse (-)
20132125 .. 20133624
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009130.1

Sequence Viewer

Length: 1053 bp
ATGAACCGTATGTTCAGTCCGTACTTGGATCAGTTTGTTGTAGTATTCGTGGATGATATCTTGATTTACTCCAAGTCTTTGGAGGATCATGATAGGCATCTGCGGATTGTGCTACAGATTCTTAGGAAGGACGAGTTGTATGCCAAGTTCGAGAAGTGTGAGTTTTGGCAGAAGGAGGTCAAGTTTCTTGGTCACGTGGTGTCGAAGGATGGGGTCTCTGTGGATCCTTCAAAGGTTGAGGCAGTGATGAGTTGGAGTCGCCCCACTACGGTTACCGAGATTCGTAGCTTTCTTGGTTTAGCTGGGTATTATCGGCGATTCATTGAGGGGTTTTCTAGTATTGCTTCGGCTTTGACCAAGTTGACCAGGAAGGATGTTCAGTTTGTTTGGACTGAGGAATGTGAAAAGGCATTCAATGAGCTGAAGACTAGATTGACTACAGCTCCAGTGTTGACTATTCCCGCTAGTGGTGGTGGTTTAGTTATCTACAGCGATGCATCTCATCAGGGTTTGGGGTGTGTGTTGATGCAGCACGGTGGCGTTGTTGCTTATGGCTCTAGACAGATTATTCAGGGTCAAGTGCAGGATGTGTTCTCACGTGCAAGGTTGGCAGAGTTAGTTGCAGATTTGATTGATGATTGTCCTTCTGAGTGGGCAGTTGGATCCGATGGTGGTTTGAGGTCGAGATCGAGATTGTGTGTTCCGGATTGTGATGAGCTCAAGGGGGAGATCCTTCGGGAGGCACATCGATCTCGATACACTTTCTGGTGGAATGGGATGAAGAGAGATGTGGCAGATTATGTGTCCAGATGTCTTACCTGCCAGCAGGTAAAGGCAGAGCATCAGAGACCTGCAGGTATGTTGAAACCATTACCTATCCCTGTGTGGAAGTGGGAGCAGATCTCTATGGACTTTGTGACTGGATTGCCTAGGTCCAGGCAAAGCCATGATGCAGTGTGGGTGATTGTGGACCGGTTGACAAGTCGGCACACTTTCTTCCTGTGTCGAAGACATACTCGGGTGATACTTTGTGCAAGTTGTACGTCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

350

Amino Acids

39.94

Weight (kDa)

8.59

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 66 2.4e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 130 - 190 4.3e-15 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 250 - 279 9.6e-09 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 817, 827, 845, 859
AccI GTMKAC 1 cut(s) 1046
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 2 cut(s) 103, 462
AclWI GGATC 7 cut(s) 36, 93, 218, 231, 657, 670, 724
AcuI CTGAAG 1 cut(s) 443
AcvI CACGTG 2 cut(s) 196, 599
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 2 cut(s) 23, 1042
AfiI CCNNNNNNNGG 3 cut(s) 268, 467, 739
AgeI ACCGGT 1 cut(s) 972
AgsI TTSAA 3 cut(s) 231, 415, 865
AjiI CACGTC 1 cut(s) 1050
AjnI CCWGG 2 cut(s) 365, 935
AluBI AGCT 5 cut(s) 288, 302, 421, 443, 718
AluI AGCT 5 cut(s) 288, 302, 421, 443, 718
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 2 cut(s) 220, 841
AlwI GGATC 7 cut(s) 36, 93, 218, 231, 657, 670, 724
Ama87I CYCGRG 1 cut(s) 1017
Aor13HI TCCGGA 1 cut(s) 703
ApeKI GCWGC 1 cut(s) 529
AsiGI ACCGGT 1 cut(s) 972
AspA2I CCTAGG 1 cut(s) 929
AspS9I GGNCC 2 cut(s) 933, 970
AsuHPI GGTGA 2 cut(s) 973, 1033
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 2 cut(s) 933, 970
AvrII CCTAGG 1 cut(s) 929
BamHI GGATCC 2 cut(s) 223, 662
BanII GRGCYC 1 cut(s) 720
BbrPI CACGTG 2 cut(s) 196, 599
BbsI GAAGAC 2 cut(s) 431, 1015
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 203, 662
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 2 cut(s) 367, 937
BcoDI GTCTC 2 cut(s) 220, 841
BfaI CTAG 5 cut(s) 336, 429, 465, 558, 930
BfmI CTRYAG 4 cut(s) 113, 438, 487, 852
BfuAI ACCTGC 4 cut(s) 817, 827, 845, 859
BglII AGATCT 1 cut(s) 900
BisI GCNGC 1 cut(s) 530
BlnI CCTAGG 1 cut(s) 929
BlsI GCNGC 1 cut(s) 531
Bme1390I CCNGG 2 cut(s) 367, 937
Bme18I GGWCC 2 cut(s) 933, 970
BmeT110I CYCGRG 1 cut(s) 1017
BmgBI CACGTC 1 cut(s) 1050
BmgT120I GGNCC 2 cut(s) 933, 970
BmiI GGNNCC 2 cut(s) 225, 664
BmrFI CCNGG 2 cut(s) 367, 937
BmsI GCATC 6 cut(s) 106, 484, 506, 516, 850, 940
BpiI GAAGAC 2 cut(s) 431, 1015
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 704
Bsa29I ATCGAT 1 cut(s) 748
BsaAI YACGTR 2 cut(s) 196, 599
BsaBI GATNNNNATC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 220, 841
BsaJI CCNNGG 1 cut(s) 929
BsaWI WCCGGW 2 cut(s) 703, 972
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 427, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 467, 739
Bse118I RCCGGY 1 cut(s) 972
Bse1I ACTGG 2 cut(s) 446, 925
Bse8I GATNNNNATC 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 2 cut(s) 367, 937
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 1 cut(s) 929
BseGI GGATG 5 cut(s) 58, 214, 379, 592, 783
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 3 cut(s) 268, 467, 739
BseMII CTCAG 2 cut(s) 384, 639
BseNI ACTGG 2 cut(s) 446, 925
BseXI GCAGC 1 cut(s) 541
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 602
BshTI ACCGGT 1 cut(s) 972
BshVI ATCGAT 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 2 cut(s) 704, 973
BslI CCNNNNNNNGG 3 cut(s) 268, 467, 739
BsmAI GTCTC 2 cut(s) 220, 841
BsmI GAATGC 1 cut(s) 410
Bso31I GGTCTC 2 cut(s) 220, 841
BsoBI CYCGRG 1 cut(s) 1017
Bsp1286I GDGCHC 1 cut(s) 720
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
BspACI CCGC 2 cut(s) 103, 462
BspCNI CTCAG 2 cut(s) 385, 640
BspDI ATCGAT 1 cut(s) 748
BspEI TCCGGA 1 cut(s) 703
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 225, 664
BspMAI CTGCAG 1 cut(s) 856
BspMI ACCTGC 4 cut(s) 817, 827, 845, 859
BspPI GGATC 7 cut(s) 36, 93, 218, 231, 657, 670, 724
BspTNI GGTCTC 2 cut(s) 220, 841
BsrFI RCCGGY 1 cut(s) 972
BsrI ACTGG 2 cut(s) 446, 925
BssAI RCCGGY 1 cut(s) 972
BssECI CCNNGG 1 cut(s) 929
BssMI GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
BssT1I CCWWGG 1 cut(s) 929
Bst2UI CCWGG 2 cut(s) 367, 937
Bst4CI ACNGT 3 cut(s) 8, 271, 536
Bst6I CTCTTC 1 cut(s) 776
BstBAI YACGTR 2 cut(s) 196, 599
BstC8I GCNNGC 1 cut(s) 824
BstDEI CTNAG 3 cut(s) 122, 393, 648
BstEII GGTNACC 1 cut(s) 271
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 5 cut(s) 58, 214, 379, 592, 783
BstKTI GATC 8 cut(s) 31, 88, 226, 665, 689, 732, 752, 903
BstMAI GTCTC 2 cut(s) 220, 841
BstMBI GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
BstMWI GCNNNNNNNGC 2 cut(s) 109, 608
BstNI CCWGG 2 cut(s) 367, 937
BstPI GGTNACC 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 365, 935
BstSFI CTRYAG 4 cut(s) 113, 438, 487, 852
BstV1I GCAGC 1 cut(s) 541
BstV2I GAAGAC 2 cut(s) 431, 1015
BstX2I RGATCY 4 cut(s) 223, 662, 729, 900
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 4 cut(s) 223, 662, 729, 900
Bsu15I ATCGAT 1 cut(s) 748
BsuTUI ATCGAT 1 cut(s) 748
BtgZI GCGATG 1 cut(s) 507
BtrI CACGTC 1 cut(s) 1050
BtsCI GGATG 5 cut(s) 58, 214, 379, 592, 783
BtsI GCAGTG 2 cut(s) 249, 960
BtsIMutI CAGTG 3 cut(s) 249, 453, 960
BveI ACCTGC 4 cut(s) 817, 827, 845, 859
Cac8I GCNNGC 1 cut(s) 824
CciI TCATGA 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 972
Cfr13I GGNCC 2 cut(s) 933, 970
ClaI ATCGAT 1 cut(s) 748
Csp6I GTAC 2 cut(s) 22, 1041
CspAI ACCGGT 1 cut(s) 972
CviAII CATG 2 cut(s) 89, 947
CviJI RGCY 8 cut(s) 288, 302, 350, 421, 443, 555, 718, 945
CviKI_1 RGCY 8 cut(s) 288, 302, 350, 421, 443, 555, 718, 945
CviQI GTAC 2 cut(s) 22, 1041
DdeI CTNAG 3 cut(s) 122, 393, 648
DpnI GATC 8 cut(s) 30, 87, 225, 664, 688, 731, 751, 902
DpnII GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
DraIII CACNNNGTG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 929
Eco24I GRGCYC 1 cut(s) 720
Eco31I GGTCTC 2 cut(s) 220, 841
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 933, 970
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 443
Eco72I CACGTG 2 cut(s) 196, 599
Eco88I CYCGRG 1 cut(s) 1017
Eco91I GGTNACC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 718
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoO65I GGTNACC 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 365, 935
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 929
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 2 cut(s) 92, 950
FaiI YATR 9 cut(s) 11, 90, 141, 552, 801, 860, 908, 948, 1014
FatI CATG 2 cut(s) 88, 946
FauI CCCGC 1 cut(s) 469
FblI GTMKAC 1 cut(s) 1046
Fnu4HI GCNGC 1 cut(s) 530
FokI GGATG 5 cut(s) 65, 221, 386, 599, 790
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 1 cut(s) 530
FspBI CTAG 5 cut(s) 336, 429, 465, 558, 930
GluI GCNGC 1 cut(s) 530
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 429
HapII CCGG 2 cut(s) 704, 973
Hin1II CATG 2 cut(s) 92, 950
HincII GTYRAC 4 cut(s) 363, 453, 978, 1047
HindII GTYRAC 4 cut(s) 363, 453, 978, 1047
HinfI GANTC 4 cut(s) 118, 256, 280, 318
HpaII CCGG 2 cut(s) 704, 973
HphI GGTGA 2 cut(s) 973, 1033
Hpy166II GTNNAC 5 cut(s) 363, 453, 970, 978, 1047
Hpy188I TCNGA 3 cut(s) 649, 667, 846
Hpy8I GTNNAC 5 cut(s) 363, 453, 970, 978, 1047
Hpy99I CGWCG 2 cut(s) 1048, 1051
HpyAV CCTTC 7 cut(s) 121, 166, 199, 237, 364, 654, 743
HpyCH4III ACNGT 3 cut(s) 8, 271, 536
HpyCH4IV ACGT 4 cut(s) 195, 598, 1043, 1049
HpyCH4V TGCA 8 cut(s) 497, 529, 583, 602, 623, 854, 953, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 608
HpyF3I CTNAG 3 cut(s) 122, 393, 648
HpySE526I ACGT 4 cut(s) 195, 598, 1043, 1049
Hsp92II CATG 2 cut(s) 92, 950
Kpn2I TCCGGA 1 cut(s) 703
Kzo9I GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
LmnI GCTCC 2 cut(s) 448, 895
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 6 cut(s) 106, 484, 506, 516, 850, 940
MaeI CTAG 5 cut(s) 336, 429, 465, 558, 930
MaeII ACGT 4 cut(s) 195, 598, 1043, 1049
MaeIII GTNAC 3 cut(s) 191, 271, 916
MalI GATC 8 cut(s) 30, 87, 225, 664, 688, 731, 751, 902
MboI GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
MboII GAAGA 4 cut(s) 436, 793, 988, 1020
MflI RGATCY 4 cut(s) 223, 662, 729, 900
MhlI GDGCHC 1 cut(s) 720
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 233, 640
MnlI CCTC 7 cut(s) 76, 169, 232, 319, 388, 672, 733
Mph1103I ATGCAT 1 cut(s) 499
MroI TCCGGA 1 cut(s) 703
MspI CCGG 2 cut(s) 704, 973
MspR9I CCNGG 2 cut(s) 367, 937
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 2 cut(s) 367, 937
MwoI GCNNNNNNNGC 2 cut(s) 109, 608
NdeII GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
NlaIII CATG 2 cut(s) 92, 950
NlaIV GGNNCC 2 cut(s) 225, 664
NmuCI GTSAC 2 cut(s) 191, 916
NsiI ATGCAT 1 cut(s) 499
PagI TCATGA 1 cut(s) 88
PctI GAATGC 1 cut(s) 410
PfeI GAWTC 3 cut(s) 118, 280, 318
PinAI ACCGGT 1 cut(s) 972
PkrI GCNGC 1 cut(s) 531
PleI GAGTC 1 cut(s) 264
PmaCI CACGTG 2 cut(s) 196, 599
PmlI CACGTG 2 cut(s) 196, 599
PpsI GAGTC 1 cut(s) 264
Ppu21I YACGTR 2 cut(s) 196, 599
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 365, 935
PspCI CACGTG 2 cut(s) 196, 599
PspEI GGTNACC 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 365, 935
PspN4I GGNNCC 2 cut(s) 225, 664
PspPI GGNCC 2 cut(s) 933, 970
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 4 cut(s) 223, 662, 729, 900
RsaI GTAC 2 cut(s) 23, 1042
RsaNI GTAC 2 cut(s) 22, 1041
SacI GAGCTC 1 cut(s) 720
SalI GTCGAC 1 cut(s) 1045
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 8 cut(s) 28, 85, 223, 662, 686, 729, 749, 900
Sau96I GGNCC 2 cut(s) 933, 970
SbfI CCTGCAGG 1 cut(s) 856
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 367, 937
SdaI CCTGCAGG 1 cut(s) 856
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 6 cut(s) 106, 484, 506, 516, 850, 940
SfcI CTRYAG 4 cut(s) 113, 438, 487, 852
SgrDI CGTCGACG 1 cut(s) 1045
SinI GGWCC 2 cut(s) 933, 970
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse8387I CCTGCAGG 1 cut(s) 856
SsiI CCGC 2 cut(s) 103, 462
SspMI CTAG 5 cut(s) 336, 429, 465, 558, 930
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 2 cut(s) 365, 935
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 3 cut(s) 8, 271, 536
TaiI ACGT 4 cut(s) 198, 601, 1046, 1052
TaqI TCGA 8 cut(s) 150, 203, 683, 689, 748, 754, 1006, 1046
TfiI GAWTC 3 cut(s) 118, 280, 318
TscAI CASTG 3 cut(s) 249, 453, 960
TseFI GTSAC 2 cut(s) 191, 916
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 2 cut(s) 191, 916
TspDTI ATGAA 3 cut(s) 17, 310, 794
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 3 cut(s) 249, 453, 960
VpaK11BI GGWCC 2 cut(s) 933, 970
XagI CCTNNNNNAGG 1 cut(s) 737
XbaI TCTAGA 1 cut(s) 557
XmaJI CCTAGG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 1046
XspI CTAG 5 cut(s) 336, 429, 465, 558, 930
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.