transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Integrase_H2C2 | PF17921 | 134 - 188 | 7e-19 | Integrase zinc binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 262, 456 |
| AcsI | RAATTY | 2 cut(s) | 10, 411 |
| AfaI | GTAC | 3 cut(s) | 68, 384, 470 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 139 |
| AgsI | TTSAA | 1 cut(s) | 139 |
| AjnI | CCWGG | 1 cut(s) | 73 |
| AluBI | AGCT | 3 cut(s) | 95, 224, 228 |
| AluI | AGCT | 3 cut(s) | 95, 224, 228 |
| AoxI | GGCC | 2 cut(s) | 81, 239 |
| ApeKI | GCWGC | 1 cut(s) | 521 |
| ApoI | RAATTY | 2 cut(s) | 10, 411 |
| AspS9I | GGNCC | 1 cut(s) | 81 |
| AsuC2I | CCSGG | 1 cut(s) | 453 |
| AsuNHI | GCTAGC | 1 cut(s) | 224 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 375, 407 |
| BbvI | GCAGC | 1 cut(s) | 533 |
| BccI | CCATC | 2 cut(s) | 78, 344 |
| BciT130I | CCWGG | 1 cut(s) | 75 |
| BcnI | CCSGG | 1 cut(s) | 453 |
| BfaI | CTAG | 3 cut(s) | 120, 225, 324 |
| BisI | GCNGC | 1 cut(s) | 522 |
| BlsI | GCNGC | 1 cut(s) | 523 |
| Bme1390I | CCNGG | 2 cut(s) | 75, 453 |
| BmgT120I | GGNCC | 1 cut(s) | 81 |
| BmiI | GGNNCC | 1 cut(s) | 355 |
| BmrFI | CCNGG | 2 cut(s) | 75, 453 |
| BmsI | GCATC | 2 cut(s) | 88, 457 |
| BmtI | GCTAGC | 1 cut(s) | 228 |
| BpmI | CTGGAG | 1 cut(s) | 231 |
| BpuMI | CCSGG | 1 cut(s) | 453 |
| BsaBI | GATNNNNATC | 1 cut(s) | 285 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 139 |
| Bse8I | GATNNNNATC | 1 cut(s) | 285 |
| BseBI | CCWGG | 1 cut(s) | 75 |
| BseGI | GGATG | 2 cut(s) | 70, 448 |
| BseJI | GATNNNNATC | 1 cut(s) | 285 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BseMII | CTCAG | 1 cut(s) | 355 |
| BseXI | GCAGC | 1 cut(s) | 533 |
| BshFI | GGCC | 2 cut(s) | 83, 241 |
| BsiSI | CCGG | 1 cut(s) | 453 |
| BslFI | GGGAC | 1 cut(s) | 472 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 139 |
| BsmFI | GGGAC | 1 cut(s) | 472 |
| BsnI | GGCC | 2 cut(s) | 83, 241 |
| Bsp143I | GATC | 1 cut(s) | 173 |
| BspACI | CCGC | 2 cut(s) | 262, 456 |
| BspANI | GGCC | 2 cut(s) | 83, 241 |
| BspCNI | CTCAG | 1 cut(s) | 354 |
| BspLI | GGNNCC | 1 cut(s) | 355 |
| BspOI | GCTAGC | 1 cut(s) | 228 |
| BssMI | GATC | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 1 cut(s) | 75 |
| Bst6I | CTCTTC | 3 cut(s) | 340, 414, 503 |
| BstC8I | GCNNGC | 1 cut(s) | 226 |
| BstDEI | CTNAG | 4 cut(s) | 104, 290, 341, 579 |
| BstF5I | GGATG | 2 cut(s) | 70, 448 |
| BstKTI | GATC | 1 cut(s) | 176 |
| BstMBI | GATC | 1 cut(s) | 173 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 546 |
| BstNI | CCWGG | 1 cut(s) | 75 |
| BstSCI | CCNGG | 2 cut(s) | 73, 451 |
| BstV1I | GCAGC | 1 cut(s) | 533 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 492 |
| BsuRI | GGCC | 2 cut(s) | 83, 241 |
| BtsCI | GGATG | 2 cut(s) | 70, 448 |
| BtsI | GCAGTG | 1 cut(s) | 315 |
| BtsIMutI | CAGTG | 1 cut(s) | 315 |
| Cac8I | GCNNGC | 1 cut(s) | 226 |
| Cfr13I | GGNCC | 1 cut(s) | 81 |
| Csp6I | GTAC | 3 cut(s) | 67, 383, 469 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 8, 43 |
| CviAII | CATG | 2 cut(s) | 233, 275 |
| CviQI | GTAC | 3 cut(s) | 67, 383, 469 |
| DdeI | CTNAG | 4 cut(s) | 104, 290, 341, 579 |
| DpnI | GATC | 1 cut(s) | 175 |
| DpnII | GATC | 1 cut(s) | 173 |
| DraI | TTTAAA | 1 cut(s) | 480 |
| Eam1104I | CTCTTC | 3 cut(s) | 340, 414, 503 |
| EarI | CTCTTC | 3 cut(s) | 340, 414, 503 |
| EcoRII | CCWGG | 1 cut(s) | 73 |
| EcoT22I | ATGCAT | 1 cut(s) | 450 |
| FaeI | CATG | 2 cut(s) | 236, 278 |
| FaqI | GGGAC | 1 cut(s) | 472 |
| FatI | CATG | 2 cut(s) | 232, 274 |
| FauI | CCCGC | 2 cut(s) | 255, 449 |
| FauNDI | CATATG | 1 cut(s) | 526 |
| Fnu4HI | GCNGC | 1 cut(s) | 522 |
| FokI | GGATG | 2 cut(s) | 57, 435 |
| Fsp4HI | GCNGC | 1 cut(s) | 522 |
| FspBI | CTAG | 3 cut(s) | 120, 225, 324 |
| GluI | GCNGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 1 cut(s) | 231 |
| HaeIII | GGCC | 2 cut(s) | 83, 241 |
| HapII | CCGG | 1 cut(s) | 453 |
| Hin1II | CATG | 2 cut(s) | 236, 278 |
| HinfI | GANTC | 2 cut(s) | 206, 244 |
| HpaII | CCGG | 1 cut(s) | 453 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy188I | TCNGA | 1 cut(s) | 344 |
| Hpy188III | TCNNGA | 2 cut(s) | 210, 395 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| HpyAV | CCTTC | 2 cut(s) | 72, 133 |
| HpyCH4V | TGCA | 4 cut(s) | 57, 101, 448, 521 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 546 |
| HpyF3I | CTNAG | 4 cut(s) | 104, 290, 341, 579 |
| Hsp92II | CATG | 2 cut(s) | 236, 278 |
| Kzo9I | GATC | 1 cut(s) | 173 |
| LmnI | GCTCC | 2 cut(s) | 212, 353 |
| LpnPI | CCDG | 5 cut(s) | 60, 87, 195, 466, 539 |
| Lsp1109I | GCAGC | 1 cut(s) | 533 |
| LweI | GCATC | 2 cut(s) | 88, 457 |
| MaeI | CTAG | 3 cut(s) | 120, 225, 324 |
| MalI | GATC | 1 cut(s) | 175 |
| MboI | GATC | 1 cut(s) | 173 |
| MboII | GAAGA | 5 cut(s) | 290, 357, 383, 431, 520 |
| MluCI | AATT | 6 cut(s) | 10, 167, 187, 296, 411, 516 |
| MlyI | GAGTC | 1 cut(s) | 215 |
| MnlI | CCTC | 6 cut(s) | 9, 18, 127, 231, 259, 415 |
| Mph1103I | ATGCAT | 1 cut(s) | 450 |
| MseI | TTAA | 7 cut(s) | 8, 42, 186, 299, 359, 402, 479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 279 |
| MspI | CCGG | 1 cut(s) | 453 |
| MspR9I | CCNGG | 2 cut(s) | 75, 453 |
| MvaI | CCWGG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 546 |
| NciI | CCSGG | 1 cut(s) | 453 |
| NdeI | CATATG | 1 cut(s) | 526 |
| NdeII | GATC | 1 cut(s) | 173 |
| NheI | GCTAGC | 1 cut(s) | 224 |
| NlaIII | CATG | 2 cut(s) | 236, 278 |
| NlaIV | GGNNCC | 1 cut(s) | 355 |
| NsiI | ATGCAT | 1 cut(s) | 450 |
| PfeI | GAWTC | 1 cut(s) | 244 |
| PfoI | TCCNGGA | 1 cut(s) | 73 |
| PkrI | GCNGC | 1 cut(s) | 523 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 73 |
| PspGI | CCWGG | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 1 cut(s) | 355 |
| PspPI | GGNCC | 1 cut(s) | 81 |
| RsaI | GTAC | 3 cut(s) | 68, 384, 470 |
| RsaNI | GTAC | 3 cut(s) | 67, 383, 469 |
| RseI | CAYNNNNRTG | 1 cut(s) | 279 |
| SaqAI | TTAA | 7 cut(s) | 8, 42, 186, 299, 359, 402, 479 |
| SatI | GCNGC | 1 cut(s) | 522 |
| Sau3AI | GATC | 1 cut(s) | 173 |
| Sau96I | GGNCC | 1 cut(s) | 81 |
| SchI | GAGTC | 1 cut(s) | 215 |
| ScrFI | CCNGG | 2 cut(s) | 75, 453 |
| SetI | ASST | 8 cut(s) | 29, 97, 226, 230, 388, 539, 558, 580 |
| SfaNI | GCATC | 2 cut(s) | 88, 457 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 279 |
| Sse9I | AATT | 6 cut(s) | 10, 167, 187, 296, 411, 516 |
| SsiI | CCGC | 2 cut(s) | 262, 456 |
| SspMI | CTAG | 3 cut(s) | 120, 225, 324 |
| StyD4I | CCNGG | 2 cut(s) | 73, 451 |
| TaqI | TCGA | 1 cut(s) | 148 |
| TasI | AATT | 6 cut(s) | 10, 167, 187, 296, 411, 516 |
| TfiI | GAWTC | 1 cut(s) | 244 |
| Tru1I | TTAA | 7 cut(s) | 8, 42, 186, 299, 359, 402, 479 |
| Tru9I | TTAA | 7 cut(s) | 8, 42, 186, 299, 359, 402, 479 |
| TscAI | CASTG | 1 cut(s) | 315 |
| TseI | GCWGC | 1 cut(s) | 521 |
| TspDTI | ATGAA | 4 cut(s) | 180, 291, 297, 521 |
| TspGWI | ACGGA | 1 cut(s) | 344 |
| TspRI | CASTG | 1 cut(s) | 315 |
| XapI | RAATTY | 2 cut(s) | 10, 411 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 492 |
| XspI | CTAG | 3 cut(s) | 120, 225, 324 |
| Zsp2I | ATGCAT | 1 cut(s) | 450 |