transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 2 - 35 | 2.4e-12 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 193 |
| AciI | CCGC | 1 cut(s) | 94 |
| AclWI | GGATC | 2 cut(s) | 104, 172 |
| AcvI | CACGTG | 1 cut(s) | 82 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AflIII | ACRYGT | 1 cut(s) | 81 |
| AgsI | TTSAA | 1 cut(s) | 148 |
| Alw26I | GTCTC | 1 cut(s) | 289 |
| AlwI | GGATC | 2 cut(s) | 104, 172 |
| AoxI | GGCC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 3 cut(s) | 20, 154, 205 |
| AvaII | GGWCC | 2 cut(s) | 154, 205 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 287, 320 |
| BbrPI | CACGTG | 1 cut(s) | 82 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BccI | CCATC | 1 cut(s) | 318 |
| BcoDI | GTCTC | 1 cut(s) | 289 |
| BfuAI | ACCTGC | 1 cut(s) | 193 |
| Bme18I | GGWCC | 2 cut(s) | 154, 205 |
| BmgT120I | GGNCC | 3 cut(s) | 20, 154, 205 |
| BmiI | GGNNCC | 1 cut(s) | 279 |
| BmrI | ACTGGG | 1 cut(s) | 17 |
| BmuI | ACTGGG | 1 cut(s) | 17 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| BsaAI | YACGTR | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 1 cut(s) | 50 |
| BsaWI | WCCGGW | 1 cut(s) | 280 |
| Bse1I | ACTGG | 1 cut(s) | 23 |
| BseDI | CCNNGG | 1 cut(s) | 50 |
| BseNI | ACTGG | 1 cut(s) | 23 |
| BseRI | GAGGAG | 1 cut(s) | 182 |
| BshFI | GGCC | 1 cut(s) | 21 |
| BsiSI | CCGG | 1 cut(s) | 281 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BsmAI | GTCTC | 1 cut(s) | 289 |
| BsmBI | CGTCTC | 1 cut(s) | 289 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| BsnI | GGCC | 1 cut(s) | 21 |
| Bsp143I | GATC | 3 cut(s) | 10, 109, 177 |
| BspACI | CCGC | 1 cut(s) | 94 |
| BspANI | GGCC | 1 cut(s) | 21 |
| BspHI | TCATGA | 1 cut(s) | 67 |
| BspLI | GGNNCC | 1 cut(s) | 279 |
| BspMI | ACCTGC | 1 cut(s) | 193 |
| BspPI | GGATC | 2 cut(s) | 104, 172 |
| BsrI | ACTGG | 1 cut(s) | 23 |
| BssECI | CCNNGG | 1 cut(s) | 50 |
| BssMI | GATC | 3 cut(s) | 10, 109, 177 |
| Bst4CI | ACNGT | 1 cut(s) | 303 |
| BstBAI | YACGTR | 1 cut(s) | 82 |
| BstDEI | CTNAG | 1 cut(s) | 209 |
| BstKTI | GATC | 3 cut(s) | 13, 112, 180 |
| BstMAI | GTCTC | 1 cut(s) | 289 |
| BstMBI | GATC | 3 cut(s) | 10, 109, 177 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BsuRI | GGCC | 1 cut(s) | 21 |
| BveI | ACCTGC | 1 cut(s) | 193 |
| CciI | TCATGA | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 3 cut(s) | 20, 154, 205 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CviAII | CATG | 2 cut(s) | 68, 119 |
| CviJI | RGCY | 3 cut(s) | 21, 136, 269 |
| CviKI_1 | RGCY | 3 cut(s) | 21, 136, 269 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 1 cut(s) | 209 |
| DpnI | GATC | 3 cut(s) | 12, 111, 179 |
| DpnII | GATC | 3 cut(s) | 10, 109, 177 |
| Eco47I | GGWCC | 2 cut(s) | 154, 205 |
| Eco72I | CACGTG | 1 cut(s) | 82 |
| EcoO109I | RGGNCCY | 2 cut(s) | 154, 205 |
| Esp3I | CGTCTC | 1 cut(s) | 289 |
| FaeI | CATG | 2 cut(s) | 71, 122 |
| FaiI | YATR | 5 cut(s) | 31, 69, 102, 120, 165 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FatI | CATG | 2 cut(s) | 67, 118 |
| HaeIII | GGCC | 1 cut(s) | 21 |
| HapII | CCGG | 1 cut(s) | 281 |
| Hin1II | CATG | 2 cut(s) | 71, 122 |
| HinfI | GANTC | 2 cut(s) | 40, 64 |
| HpaII | CCGG | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 2 cut(s) | 51, 320 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 181 |
| HpyAV | CCTTC | 1 cut(s) | 142 |
| HpyCH4III | ACNGT | 1 cut(s) | 303 |
| HpyCH4IV | ACGT | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 1 cut(s) | 209 |
| HpySE526I | ACGT | 1 cut(s) | 81 |
| Hsp92II | CATG | 2 cut(s) | 71, 122 |
| Kzo9I | GATC | 3 cut(s) | 10, 109, 177 |
| LmnI | GCTCC | 1 cut(s) | 96 |
| LpnPI | CCDG | 6 cut(s) | 36, 101, 178, 188, 194, 294 |
| MaeII | ACGT | 1 cut(s) | 81 |
| MalI | GATC | 3 cut(s) | 12, 111, 179 |
| MboI | GATC | 3 cut(s) | 10, 109, 177 |
| MboII | GAAGA | 4 cut(s) | 67, 140, 275, 296 |
| MnlI | CCTC | 5 cut(s) | 45, 57, 124, 145, 160 |
| MseI | TTAA | 3 cut(s) | 6, 234, 290 |
| MspI | CCGG | 1 cut(s) | 281 |
| NdeII | GATC | 3 cut(s) | 10, 109, 177 |
| NlaIII | CATG | 2 cut(s) | 71, 122 |
| NlaIV | GGNNCC | 1 cut(s) | 279 |
| PagI | TCATGA | 1 cut(s) | 67 |
| PfeI | GAWTC | 2 cut(s) | 40, 64 |
| PmaCI | CACGTG | 1 cut(s) | 82 |
| PmlI | CACGTG | 1 cut(s) | 82 |
| Ppu21I | YACGTR | 1 cut(s) | 82 |
| PpuMI | RGGWCCY | 2 cut(s) | 154, 205 |
| Psp5II | RGGWCCY | 2 cut(s) | 154, 205 |
| PspCI | CACGTG | 1 cut(s) | 82 |
| PspN4I | GGNNCC | 1 cut(s) | 279 |
| PspPI | GGNCC | 3 cut(s) | 20, 154, 205 |
| PspPPI | RGGWCCY | 2 cut(s) | 154, 205 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| SaqAI | TTAA | 3 cut(s) | 6, 234, 290 |
| Sau3AI | GATC | 3 cut(s) | 10, 109, 177 |
| Sau96I | GGNCC | 3 cut(s) | 20, 154, 205 |
| SetI | ASST | 6 cut(s) | 49, 56, 84, 159, 207, 229 |
| SinI | GGWCC | 2 cut(s) | 154, 205 |
| SsiI | CCGC | 1 cut(s) | 94 |
| TaaI | ACNGT | 1 cut(s) | 303 |
| TaiI | ACGT | 1 cut(s) | 84 |
| TaqI | TCGA | 2 cut(s) | 13, 189 |
| TfiI | GAWTC | 2 cut(s) | 40, 64 |
| Tru1I | TTAA | 3 cut(s) | 6, 234, 290 |
| Tru9I | TTAA | 3 cut(s) | 6, 234, 290 |
| TspDTI | ATGAA | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 2 cut(s) | 154, 205 |