RchiOBHm_Chr4g0414861

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000094
Physical Location & Seq
Reverse (-)
39382066 .. 39383814
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38519

Sequence Viewer

Length: 1194 bp
ATGGTTAAACTGAAAGGGGCTGGAGGTGGTGGATCTGTACCACAAGCTTCTGGGGAACTCTCCCATGTTGAATTTGATCTTCAGGTGCATAAGGATGAAACAGCTGCAAGGTTTAGTGAGCTGCAAATGACTCTCAACGTGTACCAGGAGTCGTTGAACTCTTTCAGGACGGAGTTGATGAAGGAACTCCAAACAGTGAAGGATAACTCAGCTGTTGCAGCAGCTCAGATCAATTCTTCCTTGCTCAAGTTTGGGTCCTTGCCTCCTACTTCTGGATCCCCGATTTTAGTTGCCAGAGAAGACTCATCTTCGTCTACAAGAGCCCTTACCACTGCAAATGGTAGCATATCTAAACCAGCTTCTGCTTCTCCTTTAAACTTAGTTGGAAACAACGTTGCCTTAGACACTACTTGTGGTACCACCACTGCTATGGTGGATCTATCATCTGAGGTTAACACAACTAGGGTCCTAGTCACTAATGCCTCTGGAGCTATAATTTTGCAAGCTATTAGTACTGGTTCAGCTGAGGAAAGAGATCTTAGCCGACAGAAACAACAGTGCAGTGAGGCACAAAACCAAACCCATTACTACCAACATACCATTTTAGGACCCCAACCTCTTGACCAATTTTTAGGACCTTATTCTGCTTCCAGCAGTAACCATGTGCATGCTGCTCCTTATTTCGGGAATCAAAACCTTTCCATGAGCTCTGCAGACCCCTTCACCATGTCGTATTCTGGTCCATACTCCCACACCCTCTTGAACTTTGCACAAGCAACCCCTCCACCCTTACAAAAATTTTCGGCACAACCTATGGGAACTGCTCGTCCCATATTTGCTACCACCATTACCCAAACACCCCAATTTAATGTTATTGGTAATGTACAAAACCACTCAGGCCCCCCATATTCCCAGCAACAGTATACACTCTTTCCTCCACCACAATACTTTCAACAATCCCCTGTGACTACTTGGGACCCCAACCTACCAACCATGAAACAAATGAAGCTTGAGTTTAGTGTTTTTAGTGGAGGAGATCCTGTGGAGTGGTTAAACAAGACTGAACAGTTCTTTGAGTTTTATCATATTCCTGAAGAAAGAAAGTTAGCCATTGCCACTATGCATCTTACAGAGAAAGCTTCTGACAGATGGTTCATGTTCAAACATGAATTCCCCAATTCTTGGCCAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

397

Amino Acids

43.43

Weight (kDa)

5.87

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AccB7I CCANNNNNTGG 1 cut(s) 1182
AccI GTMKAC 2 cut(s) 314, 923
AclI AACGTT 1 cut(s) 393
AclWI GGATC 5 cut(s) 40, 270, 283, 444, 1031
AcoI YGGCCR 1 cut(s) 1184
AcsI RAATTY 3 cut(s) 71, 797, 1169
AcuI CTGAAG 2 cut(s) 65, 1113
AfaI GTAC 5 cut(s) 39, 143, 418, 514, 885
AfiI CCNNNNNNNGG 3 cut(s) 272, 683, 1182
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 5 cut(s) 71, 157, 763, 953, 1162
AjnI CCWGG 2 cut(s) 144, 1186
AloI GAACNNNNNNTCC 2 cut(s) 811, 843
Alw21I GWGCWC 1 cut(s) 710
AlwI GGATC 5 cut(s) 40, 270, 283, 444, 1031
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 2 cut(s) 898, 1184
ApeKI GCWGC 5 cut(s) 104, 121, 218, 221, 671
ApoI RAATTY 3 cut(s) 71, 797, 1169
Asp700I GAANNNNTTC 1 cut(s) 161
Asp718I GGTACC 1 cut(s) 416
AspS9I GGNCC 7 cut(s) 255, 466, 608, 635, 740, 899, 976
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 6 cut(s) 255, 466, 608, 635, 740, 976
BalI TGGCCA 1 cut(s) 1186
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 325, 710
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 710
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 5 cut(s) 91, 108, 230, 233, 658
BccI CCATC 1 cut(s) 1143
BciT130I CCWGG 2 cut(s) 146, 1188
BfaI CTAG 3 cut(s) 462, 470, 1192
BfmI CTRYAG 1 cut(s) 711
BglII AGATCT 1 cut(s) 535
BisI GCNGC 5 cut(s) 105, 122, 219, 222, 672
BlsI GCNGC 5 cut(s) 106, 123, 220, 223, 673
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 2 cut(s) 146, 1188
Bme18I GGWCC 6 cut(s) 255, 466, 608, 635, 740, 976
BmgT120I GGNCC 7 cut(s) 255, 466, 608, 635, 740, 899, 976
BmiI GGNNCC 8 cut(s) 256, 277, 418, 467, 610, 901, 977, 978
BmrFI CCNGG 2 cut(s) 146, 1188
BmsI GCATC 1 cut(s) 1132
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 42, 507
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 230, 1031
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 683, 1182
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 1110
BseBI CCWGG 2 cut(s) 146, 1188
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 272, 683, 1182
BseMI GCAATG 1 cut(s) 1110
BseMII CTCAG 5 cut(s) 222, 239, 438, 516, 909
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 5 cut(s) 91, 108, 230, 233, 658
BseYI CCCAGC 1 cut(s) 912
BsgI GTGCAG 1 cut(s) 580
BshFI GGCC 2 cut(s) 900, 1186
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 710
BslFI GGGAC 2 cut(s) 813, 989
BslI CCNNNNNNNGG 3 cut(s) 272, 683, 1182
BsmFI GGGAC 2 cut(s) 813, 989
BsnI GGCC 2 cut(s) 900, 1186
Bsp1286I GDGCHC 2 cut(s) 325, 710
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
BspANI GGCC 2 cut(s) 900, 1186
BspCNI CTCAG 5 cut(s) 221, 238, 439, 517, 908
BspLI GGNNCC 8 cut(s) 256, 277, 418, 467, 610, 901, 977, 978
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 5 cut(s) 40, 270, 283, 444, 1031
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 1110
BsrGI TGTACA 1 cut(s) 883
BsrI ACTGG 1 cut(s) 520
BssMI GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
BssNAI GTATAC 1 cut(s) 924
Bst1107I GTATAC 1 cut(s) 924
Bst2UI CCWGG 2 cut(s) 146, 1188
Bst4CI ACNGT 4 cut(s) 196, 558, 921, 1068
BstAUI TGTACA 1 cut(s) 883
BstC8I GCNNGC 2 cut(s) 504, 669
BstDEI CTNAG 8 cut(s) 208, 225, 379, 400, 447, 525, 539, 895
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 7 cut(s) 35, 79, 231, 278, 439, 538, 1039
BstMBI GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 218, 488
BstNI CCWGG 2 cut(s) 146, 1188
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 2 cut(s) 144, 1186
BstSFI CTRYAG 1 cut(s) 711
BstV1I GCAGC 5 cut(s) 91, 108, 230, 233, 658
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 5 cut(s) 32, 275, 436, 535, 1036
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 5 cut(s) 32, 275, 436, 535, 1036
BstZ17I GTATAC 1 cut(s) 924
BsuRI GGCC 2 cut(s) 900, 1186
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 3 cut(s) 330, 423, 568
BtsIMutI CAGTG 5 cut(s) 201, 330, 423, 563, 568
Cac8I GCNNGC 2 cut(s) 504, 669
CaiI CAGNNNCTG 1 cut(s) 362
Cfr13I GGNCC 7 cut(s) 255, 466, 608, 635, 740, 899, 976
Csp6I GTAC 5 cut(s) 38, 142, 417, 513, 884
CviAII CATG 8 cut(s) 65, 662, 668, 703, 727, 994, 1156, 1166
CviQI GTAC 5 cut(s) 38, 142, 417, 513, 884
DdeI CTNAG 8 cut(s) 208, 225, 379, 400, 447, 525, 539, 895
DpnI GATC 7 cut(s) 34, 78, 230, 277, 438, 537, 1038
DpnII GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
DraI TTTAAA 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 1184
Ecl136II GAGCTC 1 cut(s) 708
Eco24I GRGCYC 2 cut(s) 325, 710
Eco47I GGWCC 6 cut(s) 255, 466, 608, 635, 740, 976
Eco53kI GAGCTC 1 cut(s) 708
Eco57I CTGAAG 2 cut(s) 65, 1113
EcoICRI GAGCTC 1 cut(s) 708
EcoO109I RGGNCCY 6 cut(s) 255, 466, 608, 635, 899, 976
EcoRI GAATTC 1 cut(s) 1169
EcoRII CCWGG 2 cut(s) 144, 1186
EcoT22I ATGCAT 1 cut(s) 1125
EcoT38I GRGCYC 2 cut(s) 325, 710
FaeI CATG 8 cut(s) 68, 665, 671, 706, 730, 997, 1159, 1169
FaqI GGGAC 2 cut(s) 813, 989
FatI CATG 8 cut(s) 64, 661, 667, 702, 726, 993, 1155, 1165
FblI GTMKAC 2 cut(s) 314, 923
Fnu4HI GCNGC 5 cut(s) 105, 122, 219, 222, 672
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 325, 710
Fsp4HI GCNGC 5 cut(s) 105, 122, 219, 222, 672
FspBI CTAG 3 cut(s) 462, 470, 1192
GluI GCNGC 5 cut(s) 105, 122, 219, 222, 672
GsaI CCCAGC 1 cut(s) 916
GsuI CTGGAG 2 cut(s) 42, 507
HaeIII GGCC 2 cut(s) 900, 1186
Hin1II CATG 8 cut(s) 68, 665, 671, 706, 730, 997, 1159, 1169
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 3 cut(s) 45, 1007, 1137
HinfI GANTC 4 cut(s) 130, 149, 302, 688
HpaI GTTAAC 1 cut(s) 454
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 4 cut(s) 142, 315, 454, 924
Hpy188I TCNGA 3 cut(s) 228, 448, 1144
Hpy188III TCNNGA 7 cut(s) 166, 273, 486, 620, 685, 760, 1091
Hpy8I GTNNAC 4 cut(s) 142, 315, 454, 924
HpyAV CCTTC 3 cut(s) 175, 193, 730
HpyCH4III ACNGT 4 cut(s) 196, 558, 921, 1068
HpyCH4IV ACGT 2 cut(s) 138, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 488
HpyF3I CTNAG 8 cut(s) 208, 225, 379, 400, 447, 525, 539, 895
HpySE526I ACGT 2 cut(s) 138, 393
Hsp92II CATG 8 cut(s) 68, 665, 671, 706, 730, 997, 1159, 1169
KflI GGGWCCC 1 cut(s) 976
KpnI GGTACC 1 cut(s) 420
KspAI GTTAAC 1 cut(s) 454
Kzo9I GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
LmnI GCTCC 2 cut(s) 488, 679
Lsp1109I GCAGC 5 cut(s) 91, 108, 230, 233, 658
LweI GCATC 1 cut(s) 1132
MaeI CTAG 3 cut(s) 462, 470, 1192
MaeII ACGT 2 cut(s) 138, 393
MaeIII GTNAC 3 cut(s) 472, 656, 964
MalI GATC 7 cut(s) 34, 78, 230, 277, 438, 537, 1038
MboI GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
MboII GAAGA 5 cut(s) 71, 228, 300, 311, 1106
MflI RGATCY 5 cut(s) 32, 275, 436, 535, 1036
MhlI GDGCHC 2 cut(s) 325, 710
MlsI TGGCCA 1 cut(s) 1186
MluCI AATT 8 cut(s) 71, 232, 495, 626, 797, 863, 1169, 1177
MluNI TGGCCA 1 cut(s) 1186
MlyI GAGTC 3 cut(s) 124, 158, 296
MmeI TCCRAC 1 cut(s) 364
Mox20I TGGCCA 1 cut(s) 1186
Mph1103I ATGCAT 1 cut(s) 1125
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 1186
MseI TTAA 5 cut(s) 6, 374, 453, 867, 1052
MslI CAYNNNNRTG 3 cut(s) 93, 428, 666
Msp20I TGGCCA 1 cut(s) 1186
MspA1I CMGCKG 3 cut(s) 104, 212, 524
MspR9I CCNGG 2 cut(s) 146, 1188
MvaI CCWGG 2 cut(s) 146, 1188
MwoI GCNNNNNNNGC 2 cut(s) 218, 488
NdeII GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
NlaIII CATG 8 cut(s) 68, 665, 671, 706, 730, 997, 1159, 1169
NlaIV GGNNCC 8 cut(s) 256, 277, 418, 467, 610, 901, 977, 978
NmuCI GTSAC 2 cut(s) 472, 964
NsiI ATGCAT 1 cut(s) 1125
NspI RCATGY 1 cut(s) 671
PaeI GCATGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 1182
PkrI GCNGC 5 cut(s) 106, 123, 220, 223, 673
PleI GAGTC 3 cut(s) 124, 157, 296
PpsI GAGTC 3 cut(s) 124, 157, 296
PpuMI RGGWCCY 5 cut(s) 255, 466, 608, 635, 976
Psp124BI GAGCTC 1 cut(s) 710
Psp1406I AACGTT 1 cut(s) 393
Psp5II RGGWCCY 5 cut(s) 255, 466, 608, 635, 976
Psp6I CCWGG 2 cut(s) 144, 1186
PspFI CCCAGC 1 cut(s) 912
PspGI CCWGG 2 cut(s) 144, 1186
PspN4I GGNNCC 8 cut(s) 256, 277, 418, 467, 610, 901, 977, 978
PspPI GGNCC 7 cut(s) 255, 466, 608, 635, 740, 899, 976
PspPPI RGGWCCY 5 cut(s) 255, 466, 608, 635, 976
PstI CTGCAG 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 5 cut(s) 32, 275, 436, 535, 1036
PvuII CAGCTG 3 cut(s) 104, 212, 524
RsaI GTAC 5 cut(s) 39, 143, 418, 514, 885
RsaNI GTAC 5 cut(s) 38, 142, 417, 513, 884
RseI CAYNNNNRTG 3 cut(s) 93, 428, 666
SacI GAGCTC 1 cut(s) 710
SaqAI TTAA 5 cut(s) 6, 374, 453, 867, 1052
SatI GCNGC 5 cut(s) 105, 122, 219, 222, 672
Sau3AI GATC 7 cut(s) 32, 76, 228, 275, 436, 535, 1036
Sau96I GGNCC 7 cut(s) 255, 466, 608, 635, 740, 899, 976
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 3 cut(s) 124, 158, 296
ScrFI CCNGG 2 cut(s) 146, 1188
SduI GDGCHC 2 cut(s) 325, 710
SfaNI GCATC 1 cut(s) 1132
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 6 cut(s) 255, 466, 608, 635, 740, 976
SmiMI CAYNNNNRTG 3 cut(s) 93, 428, 666
SmlI CTYRAG 2 cut(s) 245, 1010
SmoI CTYRAG 2 cut(s) 245, 1010
SphI GCATGC 1 cut(s) 671
Sse9I AATT 8 cut(s) 71, 232, 495, 626, 797, 863, 1169, 1177
SspMI CTAG 3 cut(s) 462, 470, 1192
SstI GAGCTC 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 144, 1186
TaaI ACNGT 4 cut(s) 196, 558, 921, 1068
TaiI ACGT 2 cut(s) 141, 396
TasI AATT 8 cut(s) 71, 232, 495, 626, 797, 863, 1169, 1177
TatI WGTACW 2 cut(s) 512, 883
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 5 cut(s) 6, 374, 453, 867, 1052
Tru9I TTAA 5 cut(s) 6, 374, 453, 867, 1052
TscAI CASTG 5 cut(s) 201, 337, 430, 563, 568
TseFI GTSAC 2 cut(s) 472, 964
TseI GCWGC 5 cut(s) 104, 121, 218, 221, 671
Tsp45I GTSAC 2 cut(s) 472, 964
TspDTI ATGAA 6 cut(s) 111, 194, 1010, 1019, 1144, 1182
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 5 cut(s) 201, 337, 430, 563, 568
Van91I CCANNNNNTGG 1 cut(s) 1182
VpaK11BI GGWCC 6 cut(s) 255, 466, 608, 635, 740, 976
XapI RAATTY 3 cut(s) 71, 797, 1169
XceI RCATGY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 2 cut(s) 427, 430
XmiI GTMKAC 2 cut(s) 314, 923
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 3 cut(s) 462, 470, 1192
ZrmI AGTACT 1 cut(s) 514
Zsp2I ATGCAT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.