RchiOBHm_Chr6g0256481

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000094
Physical Location & Seq
Forward (+)
11655434 .. 11664054
8621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23008

Sequence Viewer

Length: 1230 bp
ATGGCTCGAAATCGCCGAGCACGTGAGAGAACTCCGGTTGGGGAAGATGAGCCGATACCTAGGGGGTTTGCTGATTCTTTTGGACAGTTCTTTCGGCAGATTGCCGCAGCACTCCCCGGGTCACGTACTGACTATACTGTGGAGCGTGCTAAGAGGCACGGGGCTCAGACTTTTGCTTCTGCCGCCTCACCTGTTGAGGCTCAGCGGTGGATTGACAGGATGGAGAGAGTTTTCTCCCAAATGGATCTTCCAGAGGATAGGAAAGTGGATTTGGCAGTACAGTTTCTTGAGGATACCGCCTGGCATTGGTGGATTGATGTTACGAATGACCCTGCAAATGTTGGCCCCATGACATGGGATATGTTCAAGACCCATTTCTATGGACGGTACTTTAGTGATGCCCACCTTAATCGGATGCAAGACCAGTTCTTGAGCTTAGTGAAGAGAGATGATCAGTCAGTGTTGGAGTTTGAGCAGGAGTTTCTCTCCTTAGCCCACCATGTGCCGGATTTGGTTCGCACCGAGCAAAGCAAGATTCGTAGATTTGTTTTGGGACTTGGAGGCAAGTTTAAGGACAAGATGTTAGGCACACCGTATCGGAGCTTTACTGAGGCAGTATCTTATGCCATGGACATTGAGTCAGACTCACCTGCTGGATTTCACCCTAGGGATCCTGGTGGCCCTAGCCAGGGTCCATCTAAGAGGGCTACTTCCACATCTGGTTCTGGTTCTTCAGTTGGTAGTGGAAAGAGCAGTGGTTCCAGTTCGAGAACCCGTACTAGATTCAGGGCACGTGACAGGAGATTCTCTCGGGGTCAGTCTAGTGGACGACAGTTTGGACAGTTTGAGAGGTCCAGGAGTTATCATGGTGGTTCGAGTGGGGCTTCTGCTAGCCAGCCAGCCCAGTATGGGCAGTATCAGACAGCTGGATGTTTTATTTGTGGTCAGCAGGATCACTTCAGGAGGGACTGTCCCCTTGCGACTCAGGGAGCTAGATCTACCCCCACTCAGACTGTTGGTCAGTCCTCTGCTGGTGGTTCTACTAGCAGCGCCCGCACTAGCTCGGTAGGCCGAGCTAGTTCTCAGCAGGGCAGGGCTCAGCGAGGTCGTCCTGTGACACATGCTAGACTGCACGCCATGACCCAGCAGGAGGGCCGTGATTCACCCAAAGTTATCGTTGGACGAGAGGAGTCTCCATACGAGGAGAATCACGAGCGACGTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

409

Amino Acids

45.62

Weight (kDa)

9.83

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 56 - 213 1.2e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 91 - 186 3.7e-16 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
AatII GACGTC 1 cut(s) 1222
Acc36I ACCTGC 1 cut(s) 658
AccB7I CCANNNNNTGG 1 cut(s) 354
AciI CCGC 5 cut(s) 105, 183, 205, 297, 1054
AclWI GGATC 4 cut(s) 252, 665, 678, 960
AcuI CTGAAG 2 cut(s) 717, 943
AcvI CACGTG 2 cut(s) 23, 794
AcyI GRCGYC 1 cut(s) 1219
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 4 cut(s) 127, 279, 389, 778
AfiI CCNNNNNNNGG 7 cut(s) 306, 354, 505, 688, 689, 909, 1150
AgsI TTSAA 1 cut(s) 367
AhdI GACNNNNNGTC 2 cut(s) 637, 1017
AjnI CCWGG 4 cut(s) 299, 673, 687, 854
AjuI GAANNNNNNNTTGG 4 cut(s) 231, 254, 263, 286
AluBI AGCT 6 cut(s) 435, 603, 926, 992, 1062, 1076
AluI AGCT 6 cut(s) 435, 603, 926, 992, 1062, 1076
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 1197
AlwI GGATC 4 cut(s) 252, 665, 678, 960
Ama87I CYCGRG 2 cut(s) 116, 810
AoxI GGCC 4 cut(s) 343, 679, 1069, 1153
ApeKI GCWGC 2 cut(s) 107, 1047
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AspA2I CCTAGG 2 cut(s) 59, 665
AspLEI GCGC 1 cut(s) 1052
AspS9I GGNCC 5 cut(s) 344, 680, 692, 852, 1153
AsuC2I CCSGG 2 cut(s) 117, 118
AsuHPI GGTGA 4 cut(s) 180, 639, 653, 1155
AsuNHI GCTAGC 1 cut(s) 890
AvaI CYCGRG 2 cut(s) 116, 810
AvaII GGWCC 2 cut(s) 692, 852
AvrII CCTAGG 2 cut(s) 59, 665
BaeGI GKGCMC 1 cut(s) 793
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BamHI GGATCC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 166, 1099
BauI CACGAG 1 cut(s) 1211
BbrPI CACGTG 2 cut(s) 23, 794
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 119, 1059
BccI CCATC 2 cut(s) 214, 703
BceAI ACGGC 1 cut(s) 1140
BciT130I CCWGG 4 cut(s) 301, 675, 689, 856
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 2 cut(s) 117, 118
BcoDI GTCTC 1 cut(s) 1197
BfoI RGCGCY 1 cut(s) 1053
BfuAI ACCTGC 1 cut(s) 658
BfuI GTATCC 1 cut(s) 286
BglII AGATCT 1 cut(s) 995
BisI GCNGC 4 cut(s) 105, 108, 183, 1048
BlnI CCTAGG 2 cut(s) 59, 665
BlpI GCTNAGC 2 cut(s) 201, 1098
BlsI GCNGC 4 cut(s) 106, 109, 184, 1049
Bme1390I CCNGG 6 cut(s) 117, 118, 301, 675, 689, 856
Bme18I GGWCC 2 cut(s) 692, 852
BmeRI GACNNNNNGTC 2 cut(s) 637, 1017
BmeT110I CYCGRG 2 cut(s) 116, 810
BmgT120I GGNCC 5 cut(s) 344, 680, 692, 852, 1153
BmiI GGNNCC 4 cut(s) 346, 672, 693, 760
BmrFI CCNGG 6 cut(s) 117, 118, 301, 675, 689, 856
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 2 cut(s) 388, 405
BmtI GCTAGC 1 cut(s) 894
BmuI ACTGGG 1 cut(s) 898
BplI GAGNNNNNCTC 6 cut(s) 470, 502, 629, 661, 793, 825
Bpu10I CCTNAGC 1 cut(s) 490
Bpu1102I GCTNAGC 2 cut(s) 201, 1098
BpuEI CTTGAG 2 cut(s) 308, 451
BpuMI CCSGG 2 cut(s) 117, 118
BsaAI YACGTR 3 cut(s) 23, 125, 794
BsaHI GRCGYC 1 cut(s) 1219
BsaJI CCNNGG 6 cut(s) 59, 115, 116, 627, 665, 688
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 7 cut(s) 306, 354, 505, 688, 689, 909, 1150
Bse1I ACTGG 3 cut(s) 424, 762, 904
BseBI CCWGG 4 cut(s) 301, 675, 689, 856
BseDI CCNNGG 6 cut(s) 59, 115, 116, 627, 665, 688
BseGI GGATG 3 cut(s) 225, 420, 935
BseLI CCNNNNNNNGG 7 cut(s) 306, 354, 505, 688, 689, 909, 1150
BseMII CTCAG 7 cut(s) 179, 215, 600, 998, 1022, 1097, 1112
BseNI ACTGG 3 cut(s) 424, 762, 904
BseRI GAGGAG 2 cut(s) 1202, 1217
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 2 cut(s) 119, 1059
BseYI CCCAGC 1 cut(s) 1143
BsgI GTGCAG 1 cut(s) 1115
BshFI GGCC 4 cut(s) 345, 681, 1071, 1155
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 2 cut(s) 116, 810
BsiSI CCGG 3 cut(s) 35, 117, 506
BslFI GGGAC 3 cut(s) 567, 957, 980
BslI CCNNNNNNNGG 7 cut(s) 306, 354, 505, 688, 689, 909, 1150
BsmAI GTCTC 1 cut(s) 1197
BsmFI GGGAC 3 cut(s) 567, 957, 980
BsnI GGCC 4 cut(s) 345, 681, 1071, 1155
BsoBI CYCGRG 2 cut(s) 116, 810
Bsp1286I GDGCHC 4 cut(s) 22, 166, 793, 1099
Bsp143I GATC 5 cut(s) 244, 451, 670, 952, 995
Bsp1720I GCTNAGC 2 cut(s) 201, 1098
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 5 cut(s) 105, 183, 205, 297, 1054
BspANI GGCC 4 cut(s) 345, 681, 1071, 1155
BspCNI CTCAG 7 cut(s) 178, 214, 601, 997, 1021, 1096, 1111
BspLI GGNNCC 4 cut(s) 346, 672, 693, 760
BspMI ACCTGC 1 cut(s) 658
BspOI GCTAGC 1 cut(s) 894
BspPI GGATC 4 cut(s) 252, 665, 678, 960
BsrI ACTGG 3 cut(s) 424, 762, 904
BssECI CCNNGG 6 cut(s) 59, 115, 116, 627, 665, 688
BssMI GATC 5 cut(s) 244, 451, 670, 952, 995
BssNI GRCGYC 1 cut(s) 1219
BssSI CACGAG 1 cut(s) 1211
BssT1I CCWWGG 3 cut(s) 59, 627, 665
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 4 cut(s) 301, 675, 689, 856
Bst4CI ACNGT 9 cut(s) 87, 139, 282, 387, 594, 834, 843, 971, 1015
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 1219
BstBAI YACGTR 3 cut(s) 23, 125, 794
BstC8I GCNNGC 6 cut(s) 147, 892, 896, 900, 1054, 1134
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 3 cut(s) 225, 420, 935
BstH2I RGCGCY 1 cut(s) 1053
BstHHI GCGC 1 cut(s) 1052
BstKTI GATC 5 cut(s) 247, 454, 673, 955, 998
BstMAI GTCTC 1 cut(s) 1197
BstMBI GATC 5 cut(s) 244, 451, 670, 952, 995
BstMWI GCNNNNNNNGC 3 cut(s) 182, 1053, 1068
BstNI CCWGG 4 cut(s) 301, 675, 689, 856
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 6 cut(s) 115, 116, 299, 673, 687, 854
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 2 cut(s) 119, 1059
BstX2I RGATCY 3 cut(s) 244, 670, 995
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 3 cut(s) 244, 670, 995
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 4 cut(s) 345, 681, 1071, 1155
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 3 cut(s) 225, 420, 935
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 2 cut(s) 465, 760
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 6 cut(s) 147, 892, 896, 900, 1054, 1134
CfoI GCGC 1 cut(s) 1052
Cfr13I GGNCC 5 cut(s) 344, 680, 692, 852, 1153
Cfr9I CCCGGG 1 cut(s) 116
Csp6I GTAC 4 cut(s) 126, 278, 388, 777
CviAII CATG 7 cut(s) 349, 354, 500, 628, 866, 1121, 1138
CviQI GTAC 4 cut(s) 126, 278, 388, 777
DpnI GATC 5 cut(s) 246, 453, 672, 954, 997
DpnII GATC 5 cut(s) 244, 451, 670, 952, 995
DraIII CACNNNGTG 1 cut(s) 502
DriI GACNNNNNGTC 2 cut(s) 637, 1017
Eam1104I CTCTTC 1 cut(s) 437
Eam1105I GACNNNNNGTC 2 cut(s) 637, 1017
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 3 cut(s) 59, 627, 665
Eco24I GRGCYC 2 cut(s) 166, 1099
Eco47I GGWCC 2 cut(s) 692, 852
Eco57I CTGAAG 2 cut(s) 717, 943
Eco72I CACGTG 2 cut(s) 23, 794
Eco88I CYCGRG 2 cut(s) 116, 810
EcoRII CCWGG 4 cut(s) 299, 673, 687, 854
EcoT14I CCWWGG 3 cut(s) 59, 627, 665
EcoT38I GRGCYC 2 cut(s) 166, 1099
ErhI CCWWGG 3 cut(s) 59, 627, 665
FaeI CATG 7 cut(s) 352, 357, 503, 631, 869, 1124, 1141
FaqI GGGAC 3 cut(s) 567, 957, 980
FatI CATG 7 cut(s) 348, 353, 499, 627, 865, 1120, 1137
FauI CCCGC 1 cut(s) 1061
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 105, 108, 183, 1048
FokI GGATG 3 cut(s) 232, 427, 942
FriOI GRGCYC 2 cut(s) 166, 1099
Fsp4HI GCNGC 4 cut(s) 105, 108, 183, 1048
GlaI GCGC 1 cut(s) 1051
GluI GCNGC 4 cut(s) 105, 108, 183, 1048
GsaI CCCAGC 1 cut(s) 1147
HaeII RGCGCY 1 cut(s) 1053
HaeIII GGCC 4 cut(s) 345, 681, 1071, 1155
HapII CCGG 3 cut(s) 35, 117, 506
HhaI GCGC 1 cut(s) 1052
Hin1I GRCGYC 1 cut(s) 1219
Hin1II CATG 7 cut(s) 352, 357, 503, 631, 869, 1124, 1141
Hin6I GCGC 1 cut(s) 1050
HinP1I GCGC 1 cut(s) 1050
HpaII CCGG 3 cut(s) 35, 117, 506
HphI GGTGA 4 cut(s) 180, 639, 653, 1155
Hpy166II GTNNAC 1 cut(s) 827
Hpy188I TCNGA 6 cut(s) 168, 414, 600, 643, 921, 1011
Hpy188III TCNNGA 8 cut(s) 251, 287, 367, 430, 768, 961, 1211, 1223
Hpy8I GTNNAC 1 cut(s) 827
Hpy99I CGWCG 1 cut(s) 1221
HpyCH4III ACNGT 9 cut(s) 87, 139, 282, 387, 594, 834, 843, 971, 1015
HpyCH4IV ACGT 4 cut(s) 22, 124, 793, 1219
HpyCH4V TGCA 3 cut(s) 335, 418, 1132
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 1053, 1068
HpySE526I ACGT 4 cut(s) 22, 124, 793, 1219
Hsp92I GRCGYC 1 cut(s) 1219
Hsp92II CATG 7 cut(s) 352, 357, 503, 631, 869, 1124, 1141
HspAI GCGC 1 cut(s) 1050
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 5 cut(s) 244, 451, 670, 952, 995
LmnI GCTCC 3 cut(s) 142, 600, 989
Lsp1109I GCAGC 2 cut(s) 119, 1059
LweI GCATC 2 cut(s) 388, 405
MaeII ACGT 4 cut(s) 22, 124, 793, 1219
MaeIII GTNAC 4 cut(s) 120, 319, 794, 1114
MalI GATC 5 cut(s) 246, 453, 672, 954, 997
MboI GATC 5 cut(s) 244, 451, 670, 952, 995
MboII GAAGA 4 cut(s) 56, 239, 454, 723
MflI RGATCY 3 cut(s) 244, 670, 995
MhlI GDGCHC 4 cut(s) 22, 166, 793, 1099
MlyI GAGTC 4 cut(s) 638, 647, 976, 1199
MmeI TCCRAC 2 cut(s) 444, 1159
MseI TTAA 2 cut(s) 408, 570
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 205, 926
MspI CCGG 3 cut(s) 35, 117, 506
MspR9I CCNGG 6 cut(s) 117, 118, 301, 675, 689, 856
MvaI CCWGG 4 cut(s) 301, 675, 689, 856
MwoI GCNNNNNNNGC 3 cut(s) 182, 1053, 1068
NciI CCSGG 2 cut(s) 117, 118
NcoI CCATGG 1 cut(s) 627
NdeII GATC 5 cut(s) 244, 451, 670, 952, 995
NheI GCTAGC 1 cut(s) 890
NlaIII CATG 7 cut(s) 352, 357, 503, 631, 869, 1124, 1141
NlaIV GGNNCC 4 cut(s) 346, 672, 693, 760
NmeAIII GCCGAG 2 cut(s) 41, 1097
NmuCI GTSAC 3 cut(s) 120, 794, 1114
NspI RCATGY 1 cut(s) 1124
PaqCI CACCTGC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 19
PfeI GAWTC 6 cut(s) 74, 535, 783, 804, 1160, 1207
PflMI CCANNNNNTGG 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 854
PkrI GCNGC 4 cut(s) 106, 109, 184, 1049
PleI GAGTC 4 cut(s) 638, 646, 976, 1198
PmaCI CACGTG 2 cut(s) 23, 794
PmlI CACGTG 2 cut(s) 23, 794
PpsI GAGTC 4 cut(s) 638, 646, 976, 1198
Ppu21I YACGTR 3 cut(s) 23, 125, 794
Psp6I CCWGG 4 cut(s) 299, 673, 687, 854
PspCI CACGTG 2 cut(s) 23, 794
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 4 cut(s) 299, 673, 687, 854
PspN4I GGNNCC 4 cut(s) 346, 672, 693, 760
PspPI GGNCC 5 cut(s) 344, 680, 692, 852, 1153
PsuI RGATCY 3 cut(s) 244, 670, 995
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 4 cut(s) 127, 279, 389, 778
RsaNI GTAC 4 cut(s) 126, 278, 388, 777
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 408, 570
SatI GCNGC 4 cut(s) 105, 108, 183, 1048
Sau3AI GATC 5 cut(s) 244, 451, 670, 952, 995
Sau96I GGNCC 5 cut(s) 344, 680, 692, 852, 1153
SchI GAGTC 4 cut(s) 638, 647, 976, 1199
ScrFI CCNGG 6 cut(s) 117, 118, 301, 675, 689, 856
SduI GDGCHC 4 cut(s) 22, 166, 793, 1099
SfaNI GCATC 2 cut(s) 388, 405
SinI GGWCC 2 cut(s) 692, 852
SmaI CCCGGG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 287, 430
SmoI CTYRAG 2 cut(s) 287, 430
SsiI CCGC 5 cut(s) 105, 183, 205, 297, 1054
StyD4I CCNGG 6 cut(s) 115, 116, 299, 673, 687, 854
StyI CCWWGG 3 cut(s) 59, 627, 665
TaaI ACNGT 9 cut(s) 87, 139, 282, 387, 594, 834, 843, 971, 1015
TaiI ACGT 4 cut(s) 25, 127, 796, 1222
TaqI TCGA 3 cut(s) 7, 767, 875
TatI WGTACW 1 cut(s) 277
TauI GCSGC 2 cut(s) 107, 185
TfiI GAWTC 6 cut(s) 74, 535, 783, 804, 1160, 1207
Tru1I TTAA 2 cut(s) 408, 570
Tru9I TTAA 2 cut(s) 408, 570
TscAI CASTG 2 cut(s) 465, 760
TseFI GTSAC 3 cut(s) 120, 794, 1114
TseI GCWGC 2 cut(s) 107, 1047
Tsp45I GTSAC 3 cut(s) 120, 794, 1114
TspMI CCCGGG 1 cut(s) 116
TspRI CASTG 2 cut(s) 465, 760
Van91I CCANNNNNTGG 1 cut(s) 354
VpaK11BI GGWCC 2 cut(s) 692, 852
XceI RCATGY 1 cut(s) 1124
XmaI CCCGGG 1 cut(s) 116
XmaJI CCTAGG 2 cut(s) 59, 665
ZraI GACGTC 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.